TCONS_00011624 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011624
Unique NameTCONS_00011624
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length228

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011624 ID=TCONS_00011624|Name=TCONS_00011624|organism=Clytia hemisphaerica|type=transcript|length=228bp
gtgtattccGACAAGGACATGATGTGTATttccttcgttgtgagacaggg
agATAGGAAAGCAAAACATCACTCGCACACTcgcatgagacagggatgtg
atatggtatatttcctttgttgtgACACAGGGAGGTGCGAGAGGCGGGAG
AGCTAAAATACCACTCGCGTGATACAGGGATAATACGTACctgataaaat
aatatttcttccCACTATTCTACCGAGC
Run BLAST on NCBI

transcript from alignment at sc0000130:346006..346233

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011624 ID=TCONS_00011624|Name=TCONS_00011624|organism=Clytia hemisphaerica|type=transcript|length=228bp|location=Sequence derived from alignment at sc0000130:346006..346233 (Clytia hemisphaerica)
GCTCGGTAGAATAGTGggaagaaatattattttatcagGTACGTATTATC
CCTGTATCACGCGAGTGGTATTTTAGCTCTCCCGCCTCTCGCACCTCCCT
GTGTcacaacaaaggaaatataccatatcacatccctgtctcatgcgAGT
GTGCGAGTGATGTTTTGCTTTCCTATctccctgtctcacaacgaaggaaA
TACACATCATGTCCTTGTCggaatacac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006520XLOC_006520Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011624-exon-sc0000130-1491911889:346006..346233TCONS_00011624-exon-sc0000130-1491911889:346006..346233Clytia hemisphaericaexon
TCONS_00011624-exon-sc0000130-1510915933:346006..346233TCONS_00011624-exon-sc0000130-1510915933:346006..346233Clytia hemisphaericaexon
TCONS_00011624-exon-sc0000130-1575043694:346006..346233TCONS_00011624-exon-sc0000130-1575043694:346006..346233Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000130supercontigsc0000130:346006..346233 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.752	5.09132	4.29069	6.45242	2.73158	4.27424	0	2.5971	1.83793	1.83231	2.2097	3.39932	1.78864	4.51608	7.97846	7.00252	5.88212	4.3479	1.44078	5.3058	2.9888	3.13545	2.50075	1.13677	9.77191	12.3497	0	3.01214	1.2104	1.22095
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011624 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top