TCONS_00011622 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011622
Unique NameTCONS_00011622
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length333

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011622 ID=TCONS_00011622|Name=TCONS_00011622|organism=Clytia hemisphaerica|type=transcript|length=333bp
TTGAAAGTAAAGATGGTAGCTGCAGTAGTGTAACACATCAAAACCAGCTG
AAAAGCAAGCTGTAAGCATGATTCTGCAGATTTCTTGGCAAgttttagat
caaaacttaTTCTCTTTGATTCAAATGATTTATTTAAATGAAGAATGGAC
TCTACCGAATCTATAAAGTTGCTCTACATTGGTTGTGTTGCTGGATTTCT
gcgaaaaacatttaagttgtCGGCATTTTAATTTGAGCATAGACAGTGTG
CTTTTGGTGGCTCACATAATGTTTTGTAGTGGATTTAAATGTaactgaga
tatttccaagcacaacatgatgtaacagagATA
Run BLAST on NCBI

transcript from alignment at sc0000130:300487..300819

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011622 ID=TCONS_00011622|Name=TCONS_00011622|organism=Clytia hemisphaerica|type=transcript|length=333bp|location=Sequence derived from alignment at sc0000130:300487..300819 (Clytia hemisphaerica)
TATctctgttacatcatgttgtgcttggaaatatctcagttACATTTAAA
TCCACTACAAAACATTATGTGAGCCACCAAAAGCACACTGTCTATGCTCA
AATTAAAATGCCGacaacttaaatgtttttcgcAGAAATCCAGCAACACA
ACCAATGTAGAGCAACTTTATAGATTCGGTAGAGTCCATTCTTCATTTAA
ATAAATCATTTGAATCAAAGAGAAtaagttttgatctaaaacTTGCCAAG
AAATCTGCAGAATCATGCTTACAGCTTGCTTTTCAGCTGGTTTTGATGTG
TTACACTACTGCAGCTACCATCTTTACTTTCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006518XLOC_006518Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011622-exon-sc0000130-1491911889:300487..300819TCONS_00011622-exon-sc0000130-1491911889:300487..300819Clytia hemisphaericaexon
TCONS_00011622-exon-sc0000130-1510915933:300487..300819TCONS_00011622-exon-sc0000130-1510915933:300487..300819Clytia hemisphaericaexon
TCONS_00011622-exon-sc0000130-1575043694:300487..300819TCONS_00011622-exon-sc0000130-1575043694:300487..300819Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000130supercontigsc0000130:300487..300819 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.46258	5.81333	5.28837	6.09635	30.0209	18.7159	20.9555	25.3444	11.7576	9.9412	17.2972	10.6833	9.47718	8.36766	3.836	10.2119	5.97916	4.70064	9.21753	13.0207	18.0663	19.9906	16.6518	20.7784	5.53444	10.4586	35.9841	40.4432	60.232	56.9233
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011622 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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