TCONS_00011610 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011610
Unique NameTCONS_00011610
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length635

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011610 ID=TCONS_00011610|Name=TCONS_00011610|organism=Clytia hemisphaerica|type=transcript|length=635bp
TGGGAATTCATAGACAAGCGATATCTATGAGACACGTACTTTTTCTATCA
GCCTCGACTAGATCTCACCTAGAGGGAGAGGGAAGTCTATTAATATAGGT
AAAAAGGAGGAGGGCCGTGAAAGTAATTGAAATAGTGTGGAAATGGAGTT
GGATGCCAGGCTGGGAAACAGAAATACCAAGACGAAGACTAAACCTTAAA
CCAACCCAGAAGGACCGACGATGGACGAAACCCCTGAAAGAAGAGAGAGG
AAAAGAAATCACTTACTGGAATACAATAGCAGCAGACGATGTCTTCGCCG
CCGCGCCAAACTCGGCCACAACACCTGGTGGCCAAGACAGATCCATTCCG
ATCTTCAAAATACTTGGTAGTTAAGCAGCCGGGACATATGGCTATGTTCG
TCAAGTGACATGTGGTACATGACCACACGGCGTTCCAACATCCGTTAATT
GGAATTAAAATTAGTGTAAAACGTCGATCCATCTTCACGGGTATCcaaga
aacaatgaaaaaatattactgCTAAAAGAAACTATACTCTCCGTACAGCC
ACAACGATTGGTTGAAAGGAATCTACCAATCAAATACCACCAAGTACCAG
TTACAAGTAATACCGAACAAcacaacaaaaatgaa
Run BLAST on NCBI

transcript from alignment at sc0000130:102825..103459

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011610 ID=TCONS_00011610|Name=TCONS_00011610|organism=Clytia hemisphaerica|type=transcript|length=635bp|location=Sequence derived from alignment at sc0000130:102825..103459 (Clytia hemisphaerica)
ttcatttttgttgtgTTGTTCGGTATTACTTGTAACTGGTACTTGGTGGT
ATTTGATTGGTAGATTCCTTTCAACCAATCGTTGTGGCTGTACGGAGAGT
ATAGTTTCTTTTAGcagtaatattttttcattgtttcttgGATACCCGTG
AAGATGGATCGACGTTTTACACTAATTTTAATTCCAATTAACGGATGTTG
GAACGCCGTGTGGTCATGTACCACATGTCACTTGACGAACATAGCCATAT
GTCCCGGCTGCTTAACTACCAAGTATTTTGAAGATCGGAATGGATCTGTC
TTGGCCACCAGGTGTTGTGGCCGAGTTTGGCGCGGCGGCGAAGACATCGT
CTGCTGCTATTGTATTCCAGTAAGTGATTTCTTTTCCTCTCTCTTCTTTC
AGGGGTTTCGTCCATCGTCGGTCCTTCTGGGTTGGTTTAAGGTTTAGTCT
TCGTCTTGGTATTTCTGTTTCCCAGCCTGGCATCCAACTCCATTTCCACA
CTATTTCAATTACTTTCACGGCCCTCCTCCTTTTTACCTATATTAATAGA
CTTCCCTCTCCCTCTAGGTGAGATCTAGTCGAGGCTGATAGAAAAAGTAC
GTGTCTCATAGATATCGCTTGTCTATGAATTCCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006506XLOC_006506Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011610-exon-sc0000130-1491911889:102825..103459TCONS_00011610-exon-sc0000130-1491911889:102825..103459Clytia hemisphaericaexon
TCONS_00011610-exon-sc0000130-1510915933:102825..103459TCONS_00011610-exon-sc0000130-1510915933:102825..103459Clytia hemisphaericaexon
TCONS_00011610-exon-sc0000130-1575043694:102825..103459TCONS_00011610-exon-sc0000130-1575043694:102825..103459Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000130supercontigsc0000130:102825..103459 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.124706	0.0886728	0	0	0.786062	0.857922	5.47109	5.5486	0	0.12325	0.896604	1.054	0.988369	2.64437	0.239429	1.22929	0.910145	0.918622	0.132623	0.114857	0.465388	1.06585	0.112837	0.116592	2.53202	1.60092	0	0.208639	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011610 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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