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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011600 ID=TCONS_00011600|Name=TCONS_00011600|organism=Clytia hemisphaerica|type=transcript|length=4411bpRun BLAST on NCBI transcript from alignment at sc0000130:552448..567899- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011600 ID=TCONS_00011600|Name=TCONS_00011600|organism=Clytia hemisphaerica|type=transcript|length=15452bp|location=Sequence derived from alignment at sc0000130:552448..567899- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00011600 vs. Swiss-Prot (Human)
Match: CTDP1 (RNA polymerase II subunit A C-terminal domain phosphatase OS=Homo sapiens GN=CTDP1 PE=1 SV=3) HSP 1 Score: 252.677 bits (644), Expect = 6.627e-69 Identity = 122/221 (55.20%), Postives = 157/221 (71.04%), Query Frame = 2
Query: 53 EQCEHNTVMKDMCCDCGADLRKEPGVPG-ELAEATTATVPVVHNIQELWVSVEEAERLAKQDEKQLLKSRKLVLVVDLDMTLIHTTVQPAAKVQD--VYSFTLPNHQYEYHTKLRPNAHKFLESISKYYELHIFTMGSRMYAHTIAKMLDPDGKHFAHRIRSRDEFINSFSKFHDLKALFPCGDHMVCIIDDREDVWNFAPNLIMVKPYKYFSGTDDVNDP 706
E C H VMK +C +CG DL + G + +TATV +VH++ EL VS E+AE+L ++D+++L ++RKLVL+VDLD TLIHTT Q ++ + ++ F L + HT+LRP+ FLE I+K YELH+FT GSR+YAHTIA LDP+ K F+HRI SRDE I+ FSK +L+ LFPCGD MVCIIDDREDVW FAPNLI VK Y YF GT D+N P
Sbjct: 112 EGCSHPVVMKGLCAECGQDLTQLQSKNGKQQVPLSTATVSMVHSVPELMVSSEQAEQLGREDQQRLHRNRKLVLMVDLDQTLIHTTEQHCQQMSNKGIFHFQLGRGEPMLHTRLRPHCKDFLEKIAKLYELHVFTFGSRLYAHTIAGFLDPEKKLFSHRILSRDECIDPFSKTGNLRNLFPCGDSMVCIIDDREDVWKFAPNLITVKKYVYFQGTGDMNAP 332 HSP 2 Score: 92.4337 bits (228), Expect = 1.105e-18 Identity = 53/157 (33.76%), Postives = 85/157 (54.14%), Query Frame = 2
Query: 947 YLTYLGEILERIHKAFYETIDAVKEKGGVAKKDGEVTRFCSFGTLNPDVRVIAPQLRRQTLTDCNLVFTGVIPTNVPPEKSRPWRTAISLGARVSNDVIEAKNESEIELHTTHVVAARHGTQKAYKASKNPNQIKLVNPNWLWAANERWKRPDEADF 1417
+L YL EIL R+H +Y D K E+ PD+R I P+L+ + L D ++F+G+ PTN P EK+R A +LGA++ ++ + + + TH++AAR GT+K +A + + +VNP+WLW+ ERW + +E F
Sbjct: 589 HLIYLEEILVRVHTDYYAKYDRYLNK--------EIEEA-------PDIRKIVPELKSKVLADVAIIFSGLHPTNFPIEKTREHYHATALGAKILTRLVLSPDAPD---RATHLIAARAGTEKVLQAQEC-GHLHVVNPDWLWSCLERWDKVEEQLF 726 The following BLAST results are available for this feature:
BLAST of TCONS_00011600 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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