TCONS_00011572 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00011572
Unique Name	TCONS_00011572
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1927

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000130:289043..296869-

transcript sequence

>TCONS_00011572 ID=TCONS_00011572|Name=TCONS_00011572|organism=Clytia hemisphaerica|type=transcript|length=1927bp
CTCTTGGATTTTGCGTTCGAAAATTTAGTAGATCCATGCATGCTTTAACC
GAATCTGTTTGGGAGGTCATCTCCTGGAAATCCAAATCACGTTATGACAC
AGCCAGTGATCAATACACTCGTATCTTCATGCCAAAACTCTTCATTATCT
CATCCCTTATCATGGCGTTCAGTTATTTCAACGATAAATTAAACTGTCTT
GTCCATAAACGGTTGGAAACATCAAAAGATTTTGTTCAAGAGACATGTTG
GATTCAAGGCTTTTACATTTACCATGAGATGGAGGACCATTTGACCAATT
CAGCTTTTTACGGTATTCCTGAAGAAACTTCCAAAGACGGAATGAATATC
AACGGGGCTTTGTGTGAGACGAAGAATAGACAGAAAGAAAATCAACCTCA
TTGCAGACCAATGACCAGAAGGTATTTTTTACATTATCAATGGATACCAT
TCTACGTGTGCAGTCTGGCTGTCCTTTACTTCTTCCCTTATCTCATCTTC
AAGTTTGGCAACGCAGATCTCATCTCACTGGTGGATTACATCAGAACTGG
TGGTTTCAAAGATGTCGACAAAATCGTCAACAACTATTTCAATTATAAGA
TCAATtcgaaattgaagatgagactTATAGTTTGGTTcaatattttcatc
aagCTTTTGTTCATCCTGGTCAACGTATCCGGTTTCATTTTGACGGACTT
CGTGATGGGCGGACGTTTTTTGTCGTACGGCCCGAGCTGGTTGCGTTGGA
ACGAACTACCCAATGATGTTGCTCACAATCTGATGAAGTCACCAGCACCG
AAACCTGGAGATTATTTCCTTCCTTCGGTTGGTCTGTGTAATATCCATGA
AATGTTGAAAAATGAGCGAGCCACATACACGGATGAACACGTGGTGATTT
GTGAGATCAGTCAAAACATTCGTTATCAATACATCTTCATCATCCTCTGG
TTCTTCTTCGTCATGGGTTGCTTGATATCTGTCCTCGGTTTGGTGCAAAG
TCTCTTCGTGCTTGCCAAGTCCATGTATTGGGTGAGCTACCCCAAACACG
TGGGAAAGAAATCGTTGTCCGATTGCGTCCATTCACAACTCACTCTCAGA
GAAATGGAATATCTGGACAAGATTCGACAGATGGACATGACAATGTATGG
TGAAGTTCTACGCGAGCTGACTCGCTTCAAACCTGACATTCACGTCATCA
AGAAATTTCAAACAGCTGATGGAGAGGTCATGCTTTTACCATCTGCACCT
CTCGGTCAACACAATGTTTAGTCGTCCAATACaaccctgtctcgcagccc
taatgaaactttttcctacagttgaaatgaaaatttctaattGTTCACAG
CTCACAATATCCAGTGGGGTTGTTTTGGAGTGGGGTCGTTTTGGCGTGTC
GATTTTACCTGTGAATcttaaattgaaataaaatcaaattcaatatcCCA
GTGAAACTAATTTGTAGGATATATTTCCCACCAGGACCCATTTTTGATCA
GATTTTCCagagggtctgtgacacaggggtggtAAGAATGTGTATAGCAT
CAGTTAAATGACCACATTGTTAACTAAAAAtgcatttaaaaataaaagcc
aaaaattgtaaaaatctcTGAATTCGCGAATATTTTCAGTCCGATTTTTC
GATGATTTAAGTTTTACAAAAGGCCCTGCGGAACAACCCTTtaagtggag
aggctgaaggctcaaaatgagacaaaatttgCTAGgagtttcagaaaaaa
aatctcattcgCTCAAAAGTGGCTGAAACCTCCCTAGTCTCCCCACTTCC
GCCGGGCCTTTACAATTAATATTCTTGTTTTAGTTCTCCTAAAACTTTCT
GATAAAAattatttgtaagaatttttaatattttcagtttaataTAGGGT
GTAAACTTTTCTACTTAGAATTTTAac

Run BLAST on NCBI

transcript from alignment at sc0000130:289043..296869-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00011572 ID=TCONS_00011572|Name=TCONS_00011572|organism=Clytia hemisphaerica|type=transcript|length=7827bp|location=Sequence derived from alignment at sc0000130:289043..296869- (Clytia hemisphaerica)
CTCTTGGATTTTGCGTTCGAAAATTTAGGTAAGTTGTTTTTGTTGTAACT
AAAAAGTAGCTTAGTAANAGGTCTGAATAGATTTTATGGAAATCGGTTCT
TTGCTAGATTCTTTATATTTAGTGTAAAAATTGGTACTAAATGGTCAAAA
TTGATCCTTCTGACACGTTTTTCTTGATTTATTCCAAATCCAGAATATTC
AGAAATTGTTACATACCTCCTTTGGCTCTAAAACGGCAGTTTTGTAGTCT
TAGTATTTTATTTTCTCTTTACTGCTTTCTAATTGGTTAATTTTTTAAAC
GATGTTTTCGAACAATTTTCTTCACCCAAGCCGTTCCTTCATGTACCACC
TTTTTGNTTATTGTGGCTTTCTGAGAAGTGTTATAAAAACCTTTTAATAA
TTTTTAACTATCATCCTGTGAAGTAACAGGCGAGGGAAGGCAAAGGCGTT
AACCTTTTTTTGACAACTTCTTTTTACATGCAGAAAGCGAAAGGAGAGAA
TGCCAGGGTAAGCTTGCTTCCTTTTCGTTCTTCTAATGTCTTCCAAATGA
TTTATTATTTGTTTGTTGGTAATCTGTAAGCATGAGAAAGTCTTAAGATA
CCATTTCAACTTTTCAAAAGGGACTTTAAACATTCTCAAAGTTGTATCAT
TTTGTTAAACCTTTGTAATCTTAAGGGATTTCCAGTGTTTCATCTCTTGG
ATTTTGCGTTCGAAAATTTAGGTAAGTTGTTTTTGTTGTAACTAAAAAGT
AGCTTAGTAATTTTCTCCGCCCTTCTTCGGGTGTAGCAATTCTTTATTGT
GGATATATGAAAACATCGTCTGTACGCAGACTCGGTATCTCCCGCTGATT
TCAAAATTCATTGCCAAAGAGGAAACGATAAACGTGAGATACACTCTGGT
GTATGAAAAACACCCCTGTGTCATAGACCCACTGGGACCCCAGCCCCTGT
CTGTCAAAAATTTCATCCCCAGTAGGAGAATAACCTGGAATTTTAGCCCC
ACTGGGAAATTGACTTTTATTTCATCCCCACTTGAAATTAAATGCTTAAA
AATTGCACCCCAAAACCATCCCAACTGGATTTTTTAACCTTTGAACAATA
TGATTTCTATCCCCATTGGGGTTTCGATAGGAATTTTTATCCCCATTGAG
GAAAAAAATTCCCCCGGTGCTGTGAGACAATGGTTTATAATATAATATTT
GAGTTACAATGATTTACTTTCACAGACTCCCCCGTATNATATAGAATTGT
CTCTAGATTGCATGAAGGGTGCCGAGAGGTGCCCTCGATATTATGCCAAA
CAATTATATTGATTTGAAAACGTTATTTTCTGAGTCTTTTTTTTACAAAA
TGATTAAAAATGCCTTTAAGATTTCTTTTTCCTCGGAATTCAAAAGTTTT
TCTTGTTGCCTAACCGAGGTCCACGTAATTCTATATTTCACCTCTCAATT
TAAGCAGGGGGCACTGGAGTATAACTTTTAGATATTTCGATATTTCGTCA
CCATTTTTGTACGAGACTAACTCACTGTCAACGTCATTCACTTAAAATAA
TAATTTTCAAAATAAGTTTTATTGGAAAATTGAAATCTATATAAGGCGGA
AGAATTATTTCATATTTTCTTGTGTGAGATACAAACATCAAATTCTTTTC
TAGATTTTTAAATTTTATTTTGTAAAATTCTCATTTTAGTTAGATGTTAA
GTAGTCTATTTTTTTAGGTATTTAGTTTCTCCAGTAACAATGAAAACTTT
TACAAACTACTTTTCCAACTTGAAAATACCTTTAGGAAGAAAAGAAGTTT
TTTTTGTCATTGCGAGAAATAAGTATCAAAACAAAGTAACTTGTTCGAAC
AGACGAAATAGCTTCAGTGTGGCTTGCGGGCAAAAGAGAGAGTTCAATCT
TATTTTATGATTAAAACTTTTTGATGAATTTTATAATTGAATCACACTTT
TTTTGTGAAAACAACTTTATTTACTAATGGCTCAACAAAGTCCACTTTTG
AATATCAGGGGGTAAGTATAAAGTTTTTATATGTATACAATCTTTAAAGA
AAATTTATTGGTTGACGCGTGACCCATCCTCATTTTGCTTAAGTACGGTT
AATGACATCACAAACTCGAACTCAGTCCCTCAGTTCACTTTTTTATGATT
CTGGATAACGCTCACGTAAATTGTATTGTATCACGCTCATAAGTAAAGTG
GAAGTGACTCTGGGTACGAAATTTGGTTTGTGACGTCACAAGCTACGTAA
CTTTACGTTAGACCTCCAAAAACTGGTTGTAGGTCGAAAGCATTTTTGTT
TTCAACTAAAATCCCCTTTCGAAAATTAAAAGGAATAGAACTTTTCATAA
ATTACGTCTGACATCACTTGCCTCGTATTCAAACAATTACCATGGTGATT
GTGTCCCTTGAGACATTAAATGATTCTTTCGTGAATAGGAAGTAGCTGTA
ATAAAATCTGTTGGGAGTTAATCACCATGGCAATAATCTCAAAACGAGGC
AAATGATGTTCGTGACGTAATTTATGAAAAGGTCTATTCTGGCGATATAA
ACTAAAAGATCCAATAAACTTTAAAACTTAAGAAAGATAACAACAAATGA
CGTATTAAAGCGAGCGCAGTCTGTAAAGAGGATCCCCTTACCCCACACGT
ACGTATTTGAGTCATCATTATGAACCTTGCGGGACAAAATATTTTTGAAA
CATAACTCCTAAGATTTTAATTAAAAACTATTTATCGGACAGCCTTAACA
TTCTGATTTGAAATGAAGAAAAGTTATCATAAAAAATATCTCGATTAATT
AATTTGAAATAGCTTTTTTAACCGCCTTTTTGTATGAAAACCAGCACGAA
TGAAAGTCTTTTTGAATTGCAAGGGATTTTCTGTTTTGGTATAAACTCAG
TAGTCGATCAAAGCATGATAAAAAGCAAGCAAAAAAAAGATACTTATTTT
GAATACGATCTTCCGAAGAAAACCATTCGTCTTTAATAAGAGGGAGAGGA
TTACAAAGGTGTAAAAAATTTCATTTTTGAGACAGGGGAAAGAAATATGT
GGACCTAAATGGACCCATCTAAGGTTCGAGAAGGCAAAGTAGTTCAAGAA
AGCAATTTTTCAGATATTAATATTTTCGAAACACTCAAAAATCACGACTT
CAGGTATATTGTTGTACTTTGCTACAAACCGTCCAACTTACCGTGTTTTG
ATTAGTGATATATTCGAGCCCAGAATTAATGCTGGGAACTTTTCGTACAC
TAATCAAACAGTAAAAGTTGACCAGGGGACTAGTTATATTTTCTAAGTAC
CTTCAAATGTTAAGAAAAAGACCCTGCTCTTCAATAACATATTTAACTTT
TCTAACACGCTCTTTCTCATTTCTTCTTGCAGTAGATCCATGCATGCTTT
AACCGAATCTGTTTGGGAGGTCATCTCCTGGAAATCCAAATCACGTTATG
ACACAGCCAGTGATCAATACACTCGTATCTTCATGCCAAAACTCTTCATT
ATCTCATCCCTTATCATGGCGTTCAGTTATTTCAACGATAAATTAAACTG
TCTTGTCCATAAACGGTTGGAAACATCAAAAGATTTTGTTCAAGAGACAT
GTTGGATTCAAGGCTTTTACATTTACCATGAGATGGAGGACCATTTGACC
AATTCAGCTTTTTACGGTATTCCTGAAGAAACTTCCAAAGACGGAATGAA
TATCAACGGTTAGTCCACTTCTCCCAAAGGGAGATGCATCTTATTTTCGC
CCGATCTGTCTCGTCTCATCTCTGTCTCTTTACACTCCTGTCTCAGTGTA
CATCCTATCTCAGTTCTTTAGCATCACCCCATCCATGTATTATTAAATAG
CGAGTTTATGTATTTGCACTTTTGAGGGCGGATCCAAATCGAGTACGGTA
AAAGTGCTGATTTATACCTTCGTCCAAAGTCTGTCAGGATATAGATAAAT
TAGAAACTTACCGTCTCCGTCACAGGAAAACACACATACATAAACTCGCT
GATTGCTGTCTTAGGACAGTATTTTCAAACAAACTTTTCTGACACCTTTT
GCAATGAGGATCAAAGAAAATCATCTAGCTTATCTCGCACCGTTTTGCTT
ACACAGCAGTTTTTAAAAATAAACATATAAAAAATTCCTCCTCCCCCACA
CTGTGTGATCACAAATGTTAAGAAACTCTTTTATTAAATCTGAATTGTCA
AAATACACCTTTTTGACCGTAGCCACCAATTACTACGTGGTCATTTTTTC
GTCCGTTTTACCACCCTAAAACTGTCCCAGTCTTTTTTTCGCGACTAAAG
ACAATAGAAAAAAGTGTAAAAAAAGAATTGGGTAGAGTCTAGGGTGGTAA
ATTAAATAATAAAGTGGCAAGCGCCTGACCGCGTGACTACGGTCGAAAAG
GTGTATATAAGGCACACCCCCTTTCCATATCATGAAAAGATATGACCTTT
AAACAACAAACTTTTTCTTGTAGGGGCTTTGTGTGAGACGAAGAATAGAC
AGAAAGAAAATCAACCTCATTGCAGACCAATGACCAGAAGGTAGCTGTTG
ATGCATTAATATTTTGATTCGTTGTTGTCAATAGACCTTTTTCTCTGGAA
CATATAGTTTGACCCTCTAGCTTCAACAAGAAGAAAATTCTCGACTGTTT
TATTTTTGGAAAGAAATAATAGGACTTTCATTATAATTTGATTGTTAATA
AATATAGAACAGAATGGATACAGTCATTGTGTTGCTTTAAATCCTGTAGA
AAAGTATACCACTTTCATCGTCTCTGTGTCATAAATACTATGCACGATGA
ACAATGCTACAGGCTTTTTTATAAGAATATACTCCCGGGGGGTGGCTCGA
TTCAAAAAGGCCTTAAAGATCGGACAATGACAGTGCAAAGAAGATTTTGC
AAAACTTGAGCAAAAAATCAACCCTTACGGTGCATTTTCTTGAAACCTTT
TGACCAATTTCAGGCAAAATATGGTCAGATTTCAGAATTTTTCTCACCTT
TGCTGATTTCGGCACCTAACAGTGCATTTCGGGAAGCTTGGAAAATATAC
CCTAAAGGGAAATACTTATGGTCATTTACCTTAAGTGCCCCCCCCCCTTC
GGAATATACTCTATGAAAATACTCATGGTGATATCGACCAAAAATTAAGA
ATATCACCATCATGGAATATGACAAAGGATATAATCTTTAGTTCGTGCTC
ATCCTCAAATTTCGATCAAAAGAATAGTTCAGGATGATTTTCCCCCAAAA
GGTGAAGAAAAACACGATGAAATGGAAAAGAACGATTCTTATATATACCG
TATCTTATAAAAAAGTGTATATAATTTTCTGTTTGACCATAACCAAGTAA
AGGGACACCAAATTTCTCTTTCACTTTCAGGTATTTTTTACATTATCAAT
GGATACCATTCTACGTGTGCAGTCTGGCTGTCCTTTACTTCTTCCCTTAT
CTCATCTTCAAGTTTGGCAACGCAGATCTCATCTCACTGGTGGATTACAT
CAGAACTGGTGGTTTCAAAGATGTCGACAAAATCGTCAACAACTATTTCA
ATTATAAGATCAATTCGAAATTGAAGATGAGACTTATAGTTTGGTTCAAT
ATTTTCATCAAGGTACTTTTTCACTCCTCCTCGATTAGGTTTCCTTCTAT
TTGTATTGTTTTCTCAATTATCTGTTCCTCAAAAACGAATAACACAATGA
CTGCCGAAAATAATGCTGTAGAGTAGAGCCGATGGTTGTAGATATTTTAT
TTCTCTTCTATTGCTCCGTTTTATTTAAGGCTTGGGGACACAAGAAGTTT
TTTTCGCCTTGGTGCAATGCAACATGCTCTATCCCACCAAGAAAAAAAGT
ACGTGTCCCCAAAAAGTGAGGGAAATACCCAAAAGAAACGCTGATTTTGG
TGAAATTTCACTTTTATTGGTAGAAAGAAAAATGCGGAGTGGAGACACGA
GAAAGCGTTTCATGTTGGTGGGATGGAGCATGTTGCATTGCACCAACGCG
AAGAAAAATTTTCGTGTCCCCAAGCTAGGATTCTCTTACGAGAAACATTG
GAGAGCTCTCACAATAATCTCTGAGAAGATCTCAAATTTCTTTTGAATCT
CTTTTTGGTATGTTTGTGTATGTTTGTCATTGAAGTATCATCAATGTGCA
TCATTTCAGCTTTTGTTCATCCTGGTCAACGTATCCGGTTTCATTTTGAC
GGACTTCGTGATGGGCGGACGTTTTTTGTCGTACGGCCCGAGCTGGTTGC
GTTGGAACGAACTACCCAATGATGTTGCTCACAATCTGATGAAGTCACCA
GCACCGAAACCTGGAGATTATTTCCTTCCTTCGGTTGGTCTGTGTAATAT
CCATGAAATGTTGAAAAATGAGCGAGCCACATACACGGATGAGTAAGTCA
AAGTAGTCTGTACCGGTTGATAAACGTTTTTCATTAAGAAATACACAGCA
TACTGGTTTCAGGTACTGGCTGGATTAAACTCTAAAGTCGATTAGCTTTA
AGTGTGCACTCGTTGTTTTCTATGTGGAAACCACACTCTCAACAAAATTA
TTCTTAATAACGATGGTCCCTTTTTACCAGTAACTTTTTAATCGACTACC
CTCACATTCACCACACAACAATCGTAAAAACATGATTCATTTGAAATATA
TTGGATAGAAAATAGAGATTCAAAAAACGTCTTATAAATGCTTATGTTTA
GATTATCGAAGAAGTTCTTGGTAACTATCTCAAGTCAAGTTTTTCGGTTC
AATCATGATATATTAAATCTTCCATTTCGTTTGCAGACACGTGGTGATTT
GTGAGATCAGTCAAAACATTCGTTATCAATACATCTTCATCATCCTCTGG
TTCTTCTTCGTCATGGGTTGCTTGATATCTGTCCTCGGTTTGGTGCAAAG
TCTCTTCGTGCTTGCCAAGTCCATGTATTGGGTGAGCTACCCCAAACACG
TGGGAAAGAAATCGTTGTCCGATTGCGTCCATTCACAACTCACTCTCAGA
GAAATGGAATATCTGGACAAGATTCGACAGATGGACATGACAATGTATGG
TGAAGTTCTACGCGAGCTGACTCGCTTCAAACCTGACATTCACGTCATCA
AGAAATTTCAAACAGCTGATGGAGAGGTCATGCTTTTACCATCTGCACCT
CTCGGTCAACACAATGTTTAGTCGTCCAATACAACCCTGTCTCGCAGCCC
TAATGAAACTTTTTCCTACAGTTGAAATGAAAATTTCTAATTGTTCACAG
CTCACAATATCCAGTGGGGTTGTTTTGGAGTGGGGTCGTTTTGGCGTGTC
GATTTTACCTGTGAATCTTAAATTGAAATAAAATCAAATTCAATATCCCA
GTGAAACTAATTTGTAGGATATATTTCCCACCAGGACCCATTTTTGATCA
GATTTTCCAGAGGGTCTGTGACACAGGGGTGGTAAGAATGTGTATAGCAT
CAGTTAAATGACCACATTGTTAACTAAAAATGCATTTAAAAATAAAAGCC
AAAAATTGTAAAAATCTCTGAATTCGCGAATATTTTCAGTCCGATTTTTC
GATGATTTAAGTTTTACAAAAGGCCCTGCGGAACAACCCTTTAAGTGGAG
AGGCTGAAGGCTCAAAATGAGACAAAATTTGCTAGGAGTTTCAGAAAAAA
AATCTCATTCGCTCAAAAGTGGCTGAAACCTCCCTAGTCTCCCCACTTCC
GCCGGGCCTTTACAATTAATATTCTTGTTTTAGTTCTCCTAAAACTTTCT
GATAAAAATTATTTGTAAGAATTTTTAATATTTTCAGTTTAATATAGGGT
GTAAACTTTTCTACTTAGAATTTTAAC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_006485	XLOC_006485	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000130	supercontig	sc0000130:289043..296869 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0413002	0.0604107	0.0233813	0.0228744	0.417702	0.0797139	0.00126884	0.00266375	0	5.02121	2.39175	0	0	0	0.011726	0	0	0	0	0	0.242903	0	2.26295e-05	1.04571	0	0.838352	0	1.12768e-09	0.1146	0.116752

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00011572 vs. Swiss-Prot (Human)

BLAST of TCONS_00011572 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

You are here

TCONS_00011572 (transcript) - C. hemisphaerica