TCONS_00011571 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00011571
Unique Name	TCONS_00011571
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2008

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000130:289043..296471-

transcript sequence

>TCONS_00011571 ID=TCONS_00011571|Name=TCONS_00011571|organism=Clytia hemisphaerica|type=transcript|length=2008bp
aatttttaactATCATCCTGTGAAGTAACAGGCGAGGGAAGGCAAAGGCG
TTAACCTTTTTTTGACAACTTCTTTTTACATGCAGAAAGCGAAAGGAGAG
AATGCCAGGTAGATCCATGCATGCTTTAACCGAATCTGTTTGGGAGGTCA
TCTCCTGGAAATCCAAATCACGTTATGACACAGCCAGTGATCAATACACT
CGTATCTTCATGCCAAAACTCTTCATTATCTCATCCCTTATCATGGCGTT
CAGTTATTTCAACGATAAATTAAACTGTCTTGTCCATAAACGGTTGGAAA
CATCAAAAGATTTTGTTCAAGAGACATGTTGGATTCAAGGCTTTTACATT
TACCATGAGATGGAGGACCATTTGACCAATTCAGCTTTTTACGGTATTCC
TGAAGAAACTTCCAAAGACGGAATGAATATCAACGGGGCTTTGTGTGAGA
CGAAGAATAGACAGAAAGAAAATCAACCTCATTGCAGACCAATGACCAGA
AGGTATTTTTTACATTATCAATGGATACCATTCTACGTGTGCAGTCTGGC
TGTCCTTTACTTCTTCCCTTATCTCATCTTCAAGTTTGGCAACGCAGATC
TCATCTCACTGGTGGATTACATCAGAACTGGTGGTTTCAAAGATGTCGAC
AAAATCGTCAACAACTATTTCAATTATAAGATCAATtcgaaattgaagat
gagactTATAGTTTGGTTcaatattttcatcaagCTTTTGTTCATCCTGG
TCAACGTATCCGGTTTCATTTTGACGGACTTCGTGATGGGCGGACGTTTT
TTGTCGTACGGCCCGAGCTGGTTGCGTTGGAACGAACTACCCAATGATGT
TGCTCACAATCTGATGAAGTCACCAGCACCGAAACCTGGAGATTATTTCC
TTCCTTCGGTTGGTCTGTGTAATATCCATGAAATGTTGAAAAATGAGCGA
GCCACATACACGGATGAACACGTGGTGATTTGTGAGATCAGTCAAAACAT
TCGTTATCAATACATCTTCATCATCCTCTGGTTCTTCTTCGTCATGGGTT
GCTTGATATCTGTCCTCGGTTTGGTGCAAAGTCTCTTCGTGCTTGCCAAG
TCCATGTATTGGGTGAGCTACCCCAAACACGTGGGAAAGAAATCGTTGTC
CGATTGCGTCCATTCACAACTCACTCTCAGAGAAATGGAATATCTGGACA
AGATTCGACAGATGGACATGACAATGTATGGTGAAGTTCTACGCGAGCTG
ACTCGCTTCAAACCTGACATTCACGTCATCAAGAAATTTCAAACAGCTGA
TGGAGAGGTCATGCTTTTACCATCTGCACCTCTCGGTCAACACAATGTTT
AGTCGTCCAATACaaccctgtctcgcagccctaatgaaactttttcctac
agttgaaatgaaaatttctaattGTTCACAGCTCACAATATCCAGTGGGG
TTGTTTTGGAGTGGGGTCGTTTTGGCGTGTCGATTTTACCTGTGAATctt
aaattgaaataaaatcaaattcaatatcCCAGTGAAACTAATTTGTAGGA
TATATTTCCCACCAGGACCCATTTTTGATCAGATTTTCCagagggtctgt
gacacaggggtggtAAGAATGTGTATAGCATCAGTTAAATGACCACATTG
TTAACTAAAAAtgcatttaaaaataaaagccaaaaattgtaaaaatctcT
GAATTCGCGAATATTTTCAGTCCGATTTTTCGATGATTTAAGTTTTACAA
AAGGCCCTGCGGAACAACCCTTtaagtggagaggctgaaggctcaaaatg
agacaaaatttgCTAGgagtttcagaaaaaaaatctcattcgCTCAAAAG
TGGCTGAAACCTCCCTAGTCTCCCCACTTCCGCCGGGCCTTTACAATTAA
TATTCTTGTTTTAGTTCTCCTAAAACTTTCTGATAAAAattatttgtaag
aatttttaatattttcagtttaataTAGGGTGTAAACTTTTCTACTTAGA
ATTTTAac

Run BLAST on NCBI

transcript from alignment at sc0000130:289043..296471-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00011571 ID=TCONS_00011571|Name=TCONS_00011571|organism=Clytia hemisphaerica|type=transcript|length=7429bp|location=Sequence derived from alignment at sc0000130:289043..296471- (Clytia hemisphaerica)
AATTTTTAACTATCATCCTGTGAAGTAACAGGCGAGGGAAGGCAAAGGCG
TTAACCTTTTTTTGACAACTTCTTTTTACATGCAGAAAGCGAAAGGAGAG
AATGCCAGGGTAAGCTTGCTTCCTTTTCGTTCTTCTAATGTCTTCCAAAT
GATTTATTATTTGTTTGTTGGTAATCTGTAAGCATGAGAAAGTCTTAAGA
TACCATTTCAACTTTTCAAAAGGGACTTTAAACATTCTCAAAGTTGTATC
ATTTTGTTAAACCTTTGTAATCTTAAGGGATTTCCAGTGTTTCATCTCTT
GGATTTTGCGTTCGAAAATTTAGGTAAGTTGTTTTTGTTGTAACTAAAAA
GTAGCTTAGTAATTTTCTCCGCCCTTCTTCGGGTGTAGCAATTCTTTATT
GTGGATATATGAAAACATCGTCTGTACGCAGACTCGGTATCTCCCGCTGA
TTTCAAAATTCATTGCCAAAGAGGAAACGATAAACGTGAGATACACTCTG
GTGTATGAAAAACACCCCTGTGTCATAGACCCACTGGGACCCCAGCCCCT
GTCTGTCAAAAATTTCATCCCCAGTAGGAGAATAACCTGGAATTTTAGCC
CCACTGGGAAATTGACTTTTATTTCATCCCCACTTGAAATTAAATGCTTA
AAAATTGCACCCCAAAACCATCCCAACTGGATTTTTTAACCTTTGAACAA
TATGATTTCTATCCCCATTGGGGTTTCGATAGGAATTTTTATCCCCATTG
AGGAAAAAAATTCCCCCGGTGCTGTGAGACAATGGTTTATAATATAATAT
TTGAGTTACAATGATTTACTTTCACAGACTCCCCCGTATNATATAGAATT
GTCTCTAGATTGCATGAAGGGTGCCGAGAGGTGCCCTCGATATTATGCCA
AACAATTATATTGATTTGAAAACGTTATTTTCTGAGTCTTTTTTTTACAA
AATGATTAAAAATGCCTTTAAGATTTCTTTTTCCTCGGAATTCAAAAGTT
TTTCTTGTTGCCTAACCGAGGTCCACGTAATTCTATATTTCACCTCTCAA
TTTAAGCAGGGGGCACTGGAGTATAACTTTTAGATATTTCGATATTTCGT
CACCATTTTTGTACGAGACTAACTCACTGTCAACGTCATTCACTTAAAAT
AATAATTTTCAAAATAAGTTTTATTGGAAAATTGAAATCTATATAAGGCG
GAAGAATTATTTCATATTTTCTTGTGTGAGATACAAACATCAAATTCTTT
TCTAGATTTTTAAATTTTATTTTGTAAAATTCTCATTTTAGTTAGATGTT
AAGTAGTCTATTTTTTTAGGTATTTAGTTTCTCCAGTAACAATGAAAACT
TTTACAAACTACTTTTCCAACTTGAAAATACCTTTAGGAAGAAAAGAAGT
TTTTTTTGTCATTGCGAGAAATAAGTATCAAAACAAAGTAACTTGTTCGA
ACAGACGAAATAGCTTCAGTGTGGCTTGCGGGCAAAAGAGAGAGTTCAAT
CTTATTTTATGATTAAAACTTTTTGATGAATTTTATAATTGAATCACACT
TTTTTTGTGAAAACAACTTTATTTACTAATGGCTCAACAAAGTCCACTTT
TGAATATCAGGGGGTAAGTATAAAGTTTTTATATGTATACAATCTTTAAA
GAAAATTTATTGGTTGACGCGTGACCCATCCTCATTTTGCTTAAGTACGG
TTAATGACATCACAAACTCGAACTCAGTCCCTCAGTTCACTTTTTTATGA
TTCTGGATAACGCTCACGTAAATTGTATTGTATCACGCTCATAAGTAAAG
TGGAAGTGACTCTGGGTACGAAATTTGGTTTGTGACGTCACAAGCTACGT
AACTTTACGTTAGACCTCCAAAAACTGGTTGTAGGTCGAAAGCATTTTTG
TTTTCAACTAAAATCCCCTTTCGAAAATTAAAAGGAATAGAACTTTTCAT
AAATTACGTCTGACATCACTTGCCTCGTATTCAAACAATTACCATGGTGA
TTGTGTCCCTTGAGACATTAAATGATTCTTTCGTGAATAGGAAGTAGCTG
TAATAAAATCTGTTGGGAGTTAATCACCATGGCAATAATCTCAAAACGAG
GCAAATGATGTTCGTGACGTAATTTATGAAAAGGTCTATTCTGGCGATAT
AAACTAAAAGATCCAATAAACTTTAAAACTTAAGAAAGATAACAACAAAT
GACGTATTAAAGCGAGCGCAGTCTGTAAAGAGGATCCCCTTACCCCACAC
GTACGTATTTGAGTCATCATTATGAACCTTGCGGGACAAAATATTTTTGA
AACATAACTCCTAAGATTTTAATTAAAAACTATTTATCGGACAGCCTTAA
CATTCTGATTTGAAATGAAGAAAAGTTATCATAAAAAATATCTCGATTAA
TTAATTTGAAATAGCTTTTTTAACCGCCTTTTTGTATGAAAACCAGCACG
AATGAAAGTCTTTTTGAATTGCAAGGGATTTTCTGTTTTGGTATAAACTC
AGTAGTCGATCAAAGCATGATAAAAAGCAAGCAAAAAAAAGATACTTATT
TTGAATACGATCTTCCGAAGAAAACCATTCGTCTTTAATAAGAGGGAGAG
GATTACAAAGGTGTAAAAAATTTCATTTTTGAGACAGGGGAAAGAAATAT
GTGGACCTAAATGGACCCATCTAAGGTTCGAGAAGGCAAAGTAGTTCAAG
AAAGCAATTTTTCAGATATTAATATTTTCGAAACACTCAAAAATCACGAC
TTCAGGTATATTGTTGTACTTTGCTACAAACCGTCCAACTTACCGTGTTT
TGATTAGTGATATATTCGAGCCCAGAATTAATGCTGGGAACTTTTCGTAC
ACTAATCAAACAGTAAAAGTTGACCAGGGGACTAGTTATATTTTCTAAGT
ACCTTCAAATGTTAAGAAAAAGACCCTGCTCTTCAATAACATATTTAACT
TTTCTAACACGCTCTTTCTCATTTCTTCTTGCAGTAGATCCATGCATGCT
TTAACCGAATCTGTTTGGGAGGTCATCTCCTGGAAATCCAAATCACGTTA
TGACACAGCCAGTGATCAATACACTCGTATCTTCATGCCAAAACTCTTCA
TTATCTCATCCCTTATCATGGCGTTCAGTTATTTCAACGATAAATTAAAC
TGTCTTGTCCATAAACGGTTGGAAACATCAAAAGATTTTGTTCAAGAGAC
ATGTTGGATTCAAGGCTTTTACATTTACCATGAGATGGAGGACCATTTGA
CCAATTCAGCTTTTTACGGTATTCCTGAAGAAACTTCCAAAGACGGAATG
AATATCAACGGTTAGTCCACTTCTCCCAAAGGGAGATGCATCTTATTTTC
GCCCGATCTGTCTCGTCTCATCTCTGTCTCTTTACACTCCTGTCTCAGTG
TACATCCTATCTCAGTTCTTTAGCATCACCCCATCCATGTATTATTAAAT
AGCGAGTTTATGTATTTGCACTTTTGAGGGCGGATCCAAATCGAGTACGG
TAAAAGTGCTGATTTATACCTTCGTCCAAAGTCTGTCAGGATATAGATAA
ATTAGAAACTTACCGTCTCCGTCACAGGAAAACACACATACATAAACTCG
CTGATTGCTGTCTTAGGACAGTATTTTCAAACAAACTTTTCTGACACCTT
TTGCAATGAGGATCAAAGAAAATCATCTAGCTTATCTCGCACCGTTTTGC
TTACACAGCAGTTTTTAAAAATAAACATATAAAAAATTCCTCCTCCCCCA
CACTGTGTGATCACAAATGTTAAGAAACTCTTTTATTAAATCTGAATTGT
CAAAATACACCTTTTTGACCGTAGCCACCAATTACTACGTGGTCATTTTT
TCGTCCGTTTTACCACCCTAAAACTGTCCCAGTCTTTTTTTCGCGACTAA
AGACAATAGAAAAAAGTGTAAAAAAAGAATTGGGTAGAGTCTAGGGTGGT
AAATTAAATAATAAAGTGGCAAGCGCCTGACCGCGTGACTACGGTCGAAA
AGGTGTATATAAGGCACACCCCCTTTCCATATCATGAAAAGATATGACCT
TTAAACAACAAACTTTTTCTTGTAGGGGCTTTGTGTGAGACGAAGAATAG
ACAGAAAGAAAATCAACCTCATTGCAGACCAATGACCAGAAGGTAGCTGT
TGATGCATTAATATTTTGATTCGTTGTTGTCAATAGACCTTTTTCTCTGG
AACATATAGTTTGACCCTCTAGCTTCAACAAGAAGAAAATTCTCGACTGT
TTTATTTTTGGAAAGAAATAATAGGACTTTCATTATAATTTGATTGTTAA
TAAATATAGAACAGAATGGATACAGTCATTGTGTTGCTTTAAATCCTGTA
GAAAAGTATACCACTTTCATCGTCTCTGTGTCATAAATACTATGCACGAT
GAACAATGCTACAGGCTTTTTTATAAGAATATACTCCCGGGGGGTGGCTC
GATTCAAAAAGGCCTTAAAGATCGGACAATGACAGTGCAAAGAAGATTTT
GCAAAACTTGAGCAAAAAATCAACCCTTACGGTGCATTTTCTTGAAACCT
TTTGACCAATTTCAGGCAAAATATGGTCAGATTTCAGAATTTTTCTCACC
TTTGCTGATTTCGGCACCTAACAGTGCATTTCGGGAAGCTTGGAAAATAT
ACCCTAAAGGGAAATACTTATGGTCATTTACCTTAAGTGCCCCCCCCCCT
TCGGAATATACTCTATGAAAATACTCATGGTGATATCGACCAAAAATTAA
GAATATCACCATCATGGAATATGACAAAGGATATAATCTTTAGTTCGTGC
TCATCCTCAAATTTCGATCAAAAGAATAGTTCAGGATGATTTTCCCCCAA
AAGGTGAAGAAAAACACGATGAAATGGAAAAGAACGATTCTTATATATAC
CGTATCTTATAAAAAAGTGTATATAATTTTCTGTTTGACCATAACCAAGT
AAAGGGACACCAAATTTCTCTTTCACTTTCAGGTATTTTTTACATTATCA
ATGGATACCATTCTACGTGTGCAGTCTGGCTGTCCTTTACTTCTTCCCTT
ATCTCATCTTCAAGTTTGGCAACGCAGATCTCATCTCACTGGTGGATTAC
ATCAGAACTGGTGGTTTCAAAGATGTCGACAAAATCGTCAACAACTATTT
CAATTATAAGATCAATTCGAAATTGAAGATGAGACTTATAGTTTGGTTCA
ATATTTTCATCAAGGTACTTTTTCACTCCTCCTCGATTAGGTTTCCTTCT
ATTTGTATTGTTTTCTCAATTATCTGTTCCTCAAAAACGAATAACACAAT
GACTGCCGAAAATAATGCTGTAGAGTAGAGCCGATGGTTGTAGATATTTT
ATTTCTCTTCTATTGCTCCGTTTTATTTAAGGCTTGGGGACACAAGAAGT
TTTTTTCGCCTTGGTGCAATGCAACATGCTCTATCCCACCAAGAAAAAAA
GTACGTGTCCCCAAAAAGTGAGGGAAATACCCAAAAGAAACGCTGATTTT
GGTGAAATTTCACTTTTATTGGTAGAAAGAAAAATGCGGAGTGGAGACAC
GAGAAAGCGTTTCATGTTGGTGGGATGGAGCATGTTGCATTGCACCAACG
CGAAGAAAAATTTTCGTGTCCCCAAGCTAGGATTCTCTTACGAGAAACAT
TGGAGAGCTCTCACAATAATCTCTGAGAAGATCTCAAATTTCTTTTGAAT
CTCTTTTTGGTATGTTTGTGTATGTTTGTCATTGAAGTATCATCAATGTG
CATCATTTCAGCTTTTGTTCATCCTGGTCAACGTATCCGGTTTCATTTTG
ACGGACTTCGTGATGGGCGGACGTTTTTTGTCGTACGGCCCGAGCTGGTT
GCGTTGGAACGAACTACCCAATGATGTTGCTCACAATCTGATGAAGTCAC
CAGCACCGAAACCTGGAGATTATTTCCTTCCTTCGGTTGGTCTGTGTAAT
ATCCATGAAATGTTGAAAAATGAGCGAGCCACATACACGGATGAGTAAGT
CAAAGTAGTCTGTACCGGTTGATAAACGTTTTTCATTAAGAAATACACAG
CATACTGGTTTCAGGTACTGGCTGGATTAAACTCTAAAGTCGATTAGCTT
TAAGTGTGCACTCGTTGTTTTCTATGTGGAAACCACACTCTCAACAAAAT
TATTCTTAATAACGATGGTCCCTTTTTACCAGTAACTTTTTAATCGACTA
CCCTCACATTCACCACACAACAATCGTAAAAACATGATTCATTTGAAATA
TATTGGATAGAAAATAGAGATTCAAAAAACGTCTTATAAATGCTTATGTT
TAGATTATCGAAGAAGTTCTTGGTAACTATCTCAAGTCAAGTTTTTCGGT
TCAATCATGATATATTAAATCTTCCATTTCGTTTGCAGACACGTGGTGAT
TTGTGAGATCAGTCAAAACATTCGTTATCAATACATCTTCATCATCCTCT
GGTTCTTCTTCGTCATGGGTTGCTTGATATCTGTCCTCGGTTTGGTGCAA
AGTCTCTTCGTGCTTGCCAAGTCCATGTATTGGGTGAGCTACCCCAAACA
CGTGGGAAAGAAATCGTTGTCCGATTGCGTCCATTCACAACTCACTCTCA
GAGAAATGGAATATCTGGACAAGATTCGACAGATGGACATGACAATGTAT
GGTGAAGTTCTACGCGAGCTGACTCGCTTCAAACCTGACATTCACGTCAT
CAAGAAATTTCAAACAGCTGATGGAGAGGTCATGCTTTTACCATCTGCAC
CTCTCGGTCAACACAATGTTTAGTCGTCCAATACAACCCTGTCTCGCAGC
CCTAATGAAACTTTTTCCTACAGTTGAAATGAAAATTTCTAATTGTTCAC
AGCTCACAATATCCAGTGGGGTTGTTTTGGAGTGGGGTCGTTTTGGCGTG
TCGATTTTACCTGTGAATCTTAAATTGAAATAAAATCAAATTCAATATCC
CAGTGAAACTAATTTGTAGGATATATTTCCCACCAGGACCCATTTTTGAT
CAGATTTTCCAGAGGGTCTGTGACACAGGGGTGGTAAGAATGTGTATAGC
ATCAGTTAAATGACCACATTGTTAACTAAAAATGCATTTAAAAATAAAAG
CCAAAAATTGTAAAAATCTCTGAATTCGCGAATATTTTCAGTCCGATTTT
TCGATGATTTAAGTTTTACAAAAGGCCCTGCGGAACAACCCTTTAAGTGG
AGAGGCTGAAGGCTCAAAATGAGACAAAATTTGCTAGGAGTTTCAGAAAA
AAAATCTCATTCGCTCAAAAGTGGCTGAAACCTCCCTAGTCTCCCCACTT
CCGCCGGGCCTTTACAATTAATATTCTTGTTTTAGTTCTCCTAAAACTTT
CTGATAAAAATTATTTGTAAGAATTTTTAATATTTTCAGTTTAATATAGG
GTGTAAACTTTTCTACTTAGAATTTTAAC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_006485	XLOC_006485	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000130	supercontig	sc0000130:289043..296471 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.0600596	4.29933e-06	3.20353	0.378579	0.943863	0.822847	0	0	0	0	0	0	0	0	0	4.71913e-05	0.406574	0.000186341	0	0	2.4404	1.21036	0	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00011571 vs. Swiss-Prot (Human)

BLAST of TCONS_00011571 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00011571 (transcript) - C. hemisphaerica