TCONS_00011568 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011568
Unique NameTCONS_00011568
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length490

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011568 ID=TCONS_00011568|Name=TCONS_00011568|organism=Clytia hemisphaerica|type=transcript|length=490bp
ATTTTCTTCAACATGTCATACGTTACGAGTACAGAGCATTTAGTTTATGT
ACAATAAAGGAATCAcaagttttatttcttttgCTTCATTCAGTAGATCC
ATGCATGCTTTAACCGAATCTGTTTGGGAGGTCATCTCCTGGAAATCCAA
ATCACGTTATGACACAGCCAGTGATCAATACACTCGCATCTTCATGCCAA
AACTATTTATCGTGTCCTCTCTGGTCATGGCTTTTAGCTATTTCAATGAT
AAGTTAAACTGCATGGTTAGCAATAGACTTGATATGTCGAAAGAATTCGT
CCAAGAGACGTGTTGGATTCAAGGTTTTTACATTTACCATGAGATGCACA
CAAAACTAAACGAATCTTCGTATTATGGAATTCCTGAGTATACTGGCTAC
AATGGAGTGAATCGCAAAGGATTGTTGTGCTCAACCGTTGATCGAGCTGG
CGGTAAGAATTATGAATGCATCCCTATGATACGAAGGTAA
Run BLAST on NCBI

transcript from alignment at sc0000130:284292..287977-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011568 ID=TCONS_00011568|Name=TCONS_00011568|organism=Clytia hemisphaerica|type=transcript|length=3686bp|location=Sequence derived from alignment at sc0000130:284292..287977- (Clytia hemisphaerica)
ATTTTCTTCAACATGTCATACGTTACGAGTACAGAGCATTTAGTTTATGT
ACAATAAAGGAATCACAAGTTTTATTTCTTTTGCTTCATTCAGGTAAGGT
CCTATGTCACCTACTCTAAAGTCTTTTCTGTCCACTGTTAAAGTTAGTAC
CGAGTTTATGTGTTTTTCTGCGACAGAGATGGTTAGCTTCTGATTTGTCT
AATTCTTTATTGACTAAGGACAACGGTAAACAAGCACCCGATTTCACAGG
TCAAAATGCAGGTTATTCCACAAACCACTTCAGTCATTCCACCATTCTCA
GAAGTGCAAATACATAAACTCGCGACCCCATCATGGGCTAACATAAATAT
GCAACCCCACTAGTTTTATAGTTTTATAGTTTAACAACATACTAAAAATT
TAAGAGTGAGCAGTACCTTCATTTTAAATTTTCATCCATTTCATTTATGG
ATGCATTGGTGTAGGTTAGCTGGTAGTGAGATTGAAGAAAAACTGACTTT
TTATCAAATAGTAGCAATGGAGTTTTTTGTTGTTGAAAAATCTCGGTTGA
GATGTAAGGGTTATAGGTCTTTTATGTTGAATAATTAAATATGAATCTCG
GAAAAGATTTCATGTCCCCCTTTTGTGGTTTGCTATTTAGAACTGAGCCA
CAGCGGTGCCAGGAAGTTGAAAGATGAAAATCCGAGATCGAAAACAGTCA
GAAAAATAATGAAATGTTCAAATGATACACCTATTTGAAGGCTATTCTTT
GATACTGTAAAAGTATTGATATATGTTACATCGACTATCAGAAAAATAAC
AATCAAATGAAAAAGAATATTAGAAAATGAAAGTGAATAAGAATTGATGT
TTTTGGTCATTAAGAGTCATTATCCTTTCAATAAAAGATTTTAATTACTT
TCCAATCGGATCTGATACTTGAAGTTTCGTATTCTTCACTTCGTGTCAGT
AGTACTTCTTCCTGACCGATTTTTGACGGCGTTGCCAGGATAAGAAAAAC
AAGCTTGGGTAGAATTTAATATGGTATGGTCCGCACGTCGAGAATAATTC
TGCTGAAACACTAATGTTTGTCGTTCGATTGATAAGGTAAATTTAGTTAT
TTGCCCAACATTTTTTTCAGTTGAGAAGAACATCAGAGTTCATGACCGAG
ATCATAACATATATAAGTGCGTAAGATGGGTGGAATATATGTGCGTAAGA
TGTGGGTGGAATATGCAAAAAGGATCAGGTTTTTTAGGGAAGGCTTGAAA
CACTCCTGCCTCATAGCCCTTTTCTTATAACTTTTCCCATAGCGGAGATA
AAAATTTCTATAAAGTCTTAAAGGGGACAGAAATTTTGTTGTTCTACGCT
TAAAAAATCCAGCAGAAATGGTTTTTGACAATATTTTACACTGAATTCCA
AATGAAATTCAATTGAAATTGTAGGGTATTTTTTTACCAGGAAGAAAAAT
TGGCCAATTTTGTTAGTAGGTTTGGGGTCCCGTCGGGTCTGTGACACGAG
GATGTCAAGTTAGAGAATTGTTAATTCACACCGTCAGTCGCTACCACTAC
ATGAAAAAGGTTTTCCCGTTCGGGAAATATTCCCCGTTAAGGCAATAGTT
GCCTTTCCATATACAGTGATCCCGACTGACCGTCAGCCAAGGACCAAAAA
CGTGAAGTCAGCATAAAAATGTTTGGGTGGGTGACGAACAAAGCAATGGC
TGAAGGGTAATATAATGCAGTTTCCCTGAAAACCAAAGCAACTTAATTTT
TGACGTCAAAAGATTAAAGAGTGAATTTCTAATGAATAGCTCCATTAATC
ATCTTTTTTATAAAAGCCGCTCTTTTGCATGAAGATTAATGGCTAATTTT
ACTGATAACCTTTCCAGCTCAAAAAAACAATATAAAATCTGTGCTTGGAC
TGTCTGTAGCATTTTCGGAATGTAGTAAATTTATTCCAAAGAATATATAT
GAAAGTTTTACGAACGAATTTATTGTCAACTTGAAGCACCTTGACAACAC
TAAAAAAGAAAAGCATCACACCCATTTACCTTGAATGAGAAAAACTTTTT
TCATTTTTACTTTTCTTTTCTTCTTTTGTTACTGTGACATTAAAATTTAA
AAACACCAAAAAAAAGAAGATTTTTGAAGGAAGGGTTAATTAGACGTCCG
TCAATTTTTTGAAAACTTCTTCAATCTTGAATTATTAGCGGTGAAGCAGA
AAAACAAAGAAGAAGAAAATTAACATTAACGAGAAGTCCTTCATTTTTTG
ACAATTTTTTGATTCAAGACTTTGTTGGATGAGATTTCCATCAAATTAAT
TGGTGACCCTTTAATCATCACAATATTTTGCTCGACCAAAAACAATGAGG
AAACATCGAACACAACTCTAAGGAAATGAACTGCAAAGCGTAAAACATAT
TTTTTCACTTCTTCATTTTGCCTAACCTTTCCCAAAATCAATTTAATACA
TTGTATCTGAGGGGATTTTGCTTTACTCAATTTCTTTTTAACCGACAAAT
CTAGACAGGTAAACAGACAGAGAGACAAAGTATTTAGATTATTTTGACCT
TTTATTAAACCTTTTATAATTTGCTTCACCAGTACTATTTCAATTAACGG
TTTTAAGTTTAGGAAAGATTTTTCACAAACGTTCGCTTTTTGTAAAGACA
TTTGTTTTTCATGAAGTCAGTCAGAAAGTTTGTAAAGTCAATCTAGATGC
AAAACTTTTTACTACTGTATAGAAGGTTTGTCATTTAAGAAATTTCATAA
GGGGACAATTATTATTGTGGGTACGATTTTTCTAGCATATTTTGGGAAAG
TTTCGGTCTTACCGAAATTGTAATAAGCTTAGTGGCGTGCCAAAGAAAAG
AAGATGTTTGTGAGCTTTTTATCTAATTAAGAGGAAGGTAGAATGAGTTA
AAAAGGTTTGGTATGACTTATTGAAACCTACTCTTCAAACAGAGAGTCAG
AAAAATGAGACTGAAATTTTGTTTCTTTTCTCTTTGCAGTAGATCCATGC
ATGCTTTAACCGAATCTGTTTGGGAGGTCATCTCCTGGAAATCCAAATCA
CGTTATGACACAGCCAGTGATCAATACACTCGCATCTTCATGCCAAAACT
ATTTATCGTGTCCTCTCTGGTCATGGCTTTTAGCTATTTCAATGATAAGT
TAAACTGCATGGTTAGCAATAGACTTGATATGTCGAAAGAATTCGTCCAA
GAGACGTGTTGGATTCAAGGTTTTTACATTTACCATGAGATGCACACAAA
ACTAAACGAATCTTCGTATTATGGAATTCCTGAGTATACTGGCTACAATG
GAGTGAATCGCAAAGGTAATGACTTAATTGATTGTTCGGTGTGGAAATCA
CTTTTGACAACTAACAACACTTTTCCCTGTTTCAATTTTAGACCCAAAGA
CTGATACTGATCTTTTTTTCCTGACTATCTCTGATCATTGAAGCATCGTG
TTCCCATCCTTCGAAATGGACCTTACCTTTCCATTTCTGATACAGCAATC
AGCATCACTGAGTCAGTGAGACAGGGTTTGCAAACTTTAATAAAGCTATT
TCAATTATCAAGTTGTTGACAAAAAAGAAATGTCTTAGTTTTTCCTTTCT
CGTTTCATTTGGTAGGATTGTTGTGCTCAACCGTTGATCGAGCTGGCGGT
AAGAATTATGAATGCATCCCTATGATACGAAGGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006484XLOC_006484Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011568-exon-sc0000130-1575043694:287885..287977TCONS_00011568-exon-sc0000130-1575043694:287885..287977Clytia hemisphaericaexon
TCONS_00011568-exon-sc0000130-1575043694:284663..284988TCONS_00011568-exon-sc0000130-1575043694:284663..284988Clytia hemisphaericaexon
TCONS_00011568-exon-sc0000130-1575043694:284292..284362TCONS_00011568-exon-sc0000130-1575043694:284292..284362Clytia hemisphaericaexon
TCONS_00011568-exon-sc0000130-1510915933:287885..287977TCONS_00011568-exon-sc0000130-1510915933:287885..287977Clytia hemisphaericaexon
TCONS_00011568-exon-sc0000130-1510915933:284663..284988TCONS_00011568-exon-sc0000130-1510915933:284663..284988Clytia hemisphaericaexon
TCONS_00011568-exon-sc0000130-1510915933:284292..284362TCONS_00011568-exon-sc0000130-1510915933:284292..284362Clytia hemisphaericaexon
TCONS_00011568-exon-sc0000130-1491911889:287885..287977TCONS_00011568-exon-sc0000130-1491911889:287885..287977Clytia hemisphaericaexon
TCONS_00011568-exon-sc0000130-1491911889:284663..284988TCONS_00011568-exon-sc0000130-1491911889:284663..284988Clytia hemisphaericaexon
TCONS_00011568-exon-sc0000130-1491911889:284292..284362TCONS_00011568-exon-sc0000130-1491911889:284292..284362Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000130supercontigsc0000130:284292..287977 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.170262	0	2.75946	3.79908	2.57317	4.44563	4.23775	2.74938	2.5416	3.63209	0	0	0.479042	1.26827	2.28668	3.22805	2.26337	1.91209	0	0.727035	1.62666	0.829152	0.381595	1.0001	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011568 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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