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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011564 ID=TCONS_00011564|Name=TCONS_00011564|organism=Clytia hemisphaerica|type=transcript|length=1165bp
AAAGAAAATCATGGAAACATCTCAACATCAGCCGATATTTATAATCCAAC
CACAAAGaacagaaagaggaaaagatgGCAGTCAAATGCTTTGGAAGTTG
GGTGTCATACAGATTGTGATAGGTTGCATATCCATCCTGAGTGGAATCGC
AATGGTTTTTTACAGTTTCTTTGGAATTATTGGTGCTGGTATCTGGTCTG
GTGCTTGGTTTTTTACCACTGGGATAATTGGAGTTACCTCTGCTAGGAAA
CCTGCCAATAGATGTTTACATTGGACCAACATgtctttcaatattttcag
tTCTGTGATGTCCATTGCATTGGCATTCACTTTCCTCTGCTTCGGAATGC
TGTTGAGCAAATCACTGATTGCTTCAGGAGTGTTGATGGTTGCAGAGTTT
GGTATTTCTCTGTCAACTTCCATCGTCTGTTGCTCTTCTGGCTGCTCCAG
ACAGGGGAGAATGGTGGAAATAGATCAATGCAGCTACCCTTCCGTACCTG
GTCACTGCACAACTGAGATCAATGGATCTCCACAACAAACAACCTCCATC
ACTGCACTACCTGGCAACCAGGACTCCCAGCCACCACCATATTCTACAAA
CAGCCCTGAGGTGTAACCATATGATTGTTATGTATAGAAAACATGGGATG
GTTAATCATAAACAacgaaattttttataaaatgagGGACTGTTAAATTA
AAACTCATTCGTAGTTttcagatattccattttcatcaaatattaCTTTG
GGTGTACGACTGTGTTCAGAAATTACGGTTCGAAACGTCAACGTCAGAGA
CAATGAGTAGAAACCAAAAATatgaaacgtcaaaaaagaagacgttacaa
agcaaaatgGATCGATTTTAACAGACAGGCTCCACTATTTTCATAGGAAT
gagaactgctccgttttcttgcttcGAAACGCCGAAAAACTCCGAAATAA
ATATGAACACTTTCATTCCATAAAACATACCGGGGCGATActaaaccgta
acgtctgaacatgatcTAAATTGTCAGCAACAGTTAAAAATGTCAGCATT
TTCCTAATTTTCAATCTTgagaagaaaaaaagacaaaacagaaaatgttA
GCAGTTTTATTCCGTTTTTATTTTACTGGTTCATACTTAAAATTGGACAA
AACCTACATTTTCGG Run BLAST on NCBI protein sequence of TCONS_00011564-protein >TCONS_00011564-protein ID=TCONS_00011564-protein|Name=TCONS_00011564-protein|organism=Clytia hemisphaerica|type=polypeptide|length=204bp
KKIMETSQHQPIFIIQPQRTERGKDGSQMLWKLGVIQIVIGCISILSGIA
MVFYSFFGIIGAGIWSGAWFFTTGIIGVTSARKPANRCLHWTNMSFNIFS
SVMSIALAFTFLCFGMLLSKSLIASGVLMVAEFGISLSTSIVCCSSGCSR
QGRMVEIDQCSYPSVPGHCTTEINGSPQQTTSITALPGNQDSQPPPYSTN
SPEV Run BLAST on NCBI transcript from alignment at sc0000130:179791..182326- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011564 ID=TCONS_00011564|Name=TCONS_00011564|organism=Clytia hemisphaerica|type=transcript|length=2536bp|location=Sequence derived from alignment at sc0000130:179791..182326- (Clytia hemisphaerica)
AAAGAAAATCATGGAAACATCTCAACATCAGCCGATATTTATAATCCAAC
CACAAAGAACAGAAAGAGGAAAAGATGGCAGTCAAATGCTTTGGAAGTTG
GGTAAGCATTGAGTGGAAGAAGATTCATTCATAGATGATAGCAATGTTTA
TATTATTTCGAATAGTAAAAATAGAATTTCAATCTTCTCTCAGAGCAGAA
GCTTTTAAACCGAATAGCTATCGGCACATTTTATTTATAACTCTTCAACA
CAGCGCATAGCACCCTGGCAGCTGGCTGTGTTTGGTCTGATCGCTAATCA
TTATTGCATACATATCTGGGGGGGGTACTTTGGCAAATGGAGGGTACGGT
TATGTGCCGCCCTTAAGGATACCTTTTTTGGACTTCCAAAGTCTACTAAG
GATTTGAAAAATCAGAAAATCAAATCTCAGTCCCATTGAAATTGAAATTT
GGTAGAATTTAGTCCCAATAAAGGTAGTAAAATTCACAAAATTTTCGGGG
CATACATATAACAATACATCTCAATGGGGATCTATCGATAATATAATAAT
TTAAACGTCGTTTTTCTTTTAGGTGTCATACAGATTGTGATAGGTTGCAT
ATCCATCCTGAGTGGAATCGCAATGGTTTTTTACAGTTTCTTTGGAATTA
TTGGTGCTGGTATCTGGTCTGGTGCTTGGTTTTTTACCACTGGGATAATT
GGAGTTACCTCTGCTAGGAAACCTGCCAATAGATGTTTACATTGGACCAA
CATGTCTTTCAATATTTTCAGTTCTGTGATGTCCATTGCATTGGCATTCA
CTTTCCTCTGCTTCGGAATGCTGCAAGTCCTTTTCATATTTTTATTCATC
TATAAATACCACTGTGTGCAAAGTCGATTTTTAATTAGCGAGCCTGCCTG
GTGATCTTCTCACTGTACAGTCCTTTTTCTCACTCTTTACTTGAAACTTT
TTTGTACATACAGTAAGTAGTCTACTAGTGGAGTAGTCAAAAAGAGCAAG
ACCATGGTACACAAAAAAAATTTAAAACTTATCTAAACTAATCTAAACTA
GGTTGAGCAAATCACTGATTGCTTCAGGAGTGTTGATGGTTGCAGAGTTT
GGTATTTCTCTGTCAACTTCCATCGTCTGTTGCTCTTCTGGCTGCTCCAG
ACAGGGTAAGAATCTTCATTTCGAAAGTTAAATCTTTAAGAGTCAGGTTT
ATGTTTAAATTTTAATCAATTAAACCCCTACTGTACAGAATATATCAAAA
CCTTTCTGAAAATAATTATTTAAATGTCACATATTATATAAAAACAGATA
AAAAGAAAGTTCTTTTTTTAAGAAAGGAAATTCGAACAAAAAACAATGAA
ATTGACATCCTTAAATAAGATAGTAGAACGTTCGAAAATGTCATAAAAAG
AGAGAAAGATTGAATGCAATATAAAATAGGGAAAATGTTTCCTGCTAATT
TGTGAACGATAAACCATATATTCAATGTCGAATATCTGCTCATTATTCGT
ATCCCTCTGTAATTCGAACAGATCGAACTTCCCGATCGAATTCGAATTAG
TGACAGTTAACTGTAGCTTGTTACCTTGCACACCAGTAAGTCAACCGTAT
TTAAAATACAGTGGACTCCCTCTCTAATTCGATCTTCAAGGGAACAAAAA
TTGTATTCAAATTTGAGAAAGATTCGAATTACAGAGAGTAATTCAAACAA
CTATAGAAAGTAATTCAAACCACTTTCCAGTGACGAGACCAATATTTTAG
TTCGAATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTTGA
CTGTAAGTATTCCTTCTTTTTCAAAGGGAGAATGGTGGAAATAGATCAAT
GCAGCTACCCTTCCGTACCTGGTCACTGCACAACTGAGATCAATGGATCT
CCACAACAAACAACCTCCATCACTGCACTACCTGGCAACCAGGACTCCCA
GCCACCACCATATTCTACAAACAGCCCTGAGGTGTAACCATATGATTGTT
ATGTATAGAAAACATGGGATGGTTAATCATAAACAACGAAATTTTTTATA
AAATGAGGGACTGTTAAATTAAAACTCATTCGTAGTTTTCAGATATTCCA
TTTTCATCAAATATTACTTTGGGTGTACGACTGTGTTCAGAAATTACGGT
TCGAAACGTCAACGTCAGAGACAATGAGTAGAAACCAAAAATATGAAACG
TCAAAAAAGAAGACGTTACAAAGCAAAATGGATCGATTTTAACAGACAGG
CTCCACTATTTTCATAGGAATGAGAACTGCTCCGTTTTCTTGCTTCGAAA
CGCCGAAAAACTCCGAAATAAATATGAACACTTTCATTCCATAAAACATA
CCGGGGCGATACTAAACCGTAACGTCTGAACATGATCTAAATTGTCAGCA
ACAGTTAAAAATGTCAGCATTTTCCTAATTTTCAATCTTGAGAAGAAAAA
AAGACAAAACAGAAAATGTTAGCAGTTTTATTCCGTTTTTATTTTACTGG
TTCATACTTAAAATTGGACAAAACCTACATTTTCGG Coding sequence (CDS) from alignment at sc0000130:179791..182326- >TCONS_00011564 ID=TCONS_00011564|Name=TCONS_00011564|organism=Clytia hemisphaerica|type=CDS|length=2460bp|location=Sequence derived from alignment at sc0000130:179791..182326- (Clytia hemisphaerica)
GGAGAATGGTGGAAATAGATCAATGCAGCTACCCTTCCGTACCTGGTCAC
TGCACAACTGAGATCAATGGATCTCCACAACAAACAACCTCCATCACTGC
ACTACCTGGCAACCAGGACTCCCAGCCACCACCATATTCTACAAACAGCC
CTGAGGTGTAAGTTGAGCAAATCACTGATTGCTTCAGGAGTGTTGATGGT
TGCAGAGTTTGGTATTTCTCTGTCAACTTCCATCGTCTGTTGCTCTTCTG
GCTGCTCCAGACAGGGTGTCATACAGATTGTGATAGGTTGCATATCCATC
CTGAGTGGAATCGCAATGGTTTTTTACAGTTTCTTTGGAATTATTGGTGC
TGGTATCTGGTCTGGTGCTTGGTTTTTTACCACTGGGATAATTGGAGTTA
CCTCTGCTAGGAAACCTGCCAATAGATGTTTACATTGGACCAACATGTCT
TTCAATATTTTCAGTTCTGTGATGTCCATTGCATTGGCATTCACTTTCCT
CTGCTTCGGAATGCTAAGAAAATCATGGAAACATCTCAACATCAGCCGAT
ATTTATAATCCAACCACAAAGAACAGAAAGAGGAAAAGATGGCAGTCAAA
TGCTTTGGAAGTTGGGGAGAATGGTGGAAATAGATCAATGCAGCTACCCT
TCCGTACCTGGTCACTGCACAACTGAGATCAATGGATCTCCACAACAAAC
AACCTCCATCACTGCACTACCTGGCAACCAGGACTCCCAGCCACCACCAT
ATTCTACAAACAGCCCTGAGGTGTAAGTTGAGCAAATCACTGATTGCTTC
AGGAGTGTTGATGGTTGCAGAGTTTGGTATTTCTCTGTCAACTTCCATCG
TCTGTTGCTCTTCTGGCTGCTCCAGACAGGGTGTCATACAGATTGTGATA
GGTTGCATATCCATCCTGAGTGGAATCGCAATGGTTTTTTACAGTTTCTT
TGGAATTATTGGTGCTGGTATCTGGTCTGGTGCTTGGTTTTTTACCACTG
GGATAATTGGAGTTACCTCTGCTAGGAAACCTGCCAATAGATGTTTACAT
TGGACCAACATGTCTTTCAATATTTTCAGTTCTGTGATGTCCATTGCATT
GGCATTCACTTTCCTCTGCTTCGGAATGCTAAGAAAATCATGGAAACATC
TCAACATCAGCCGATATTTATAATCCAACCACAAAGAACAGAAAGAGGAA
AAGATGGCAGTCAAATGCTTTGGAAGTTGGGGAGAATGGTGGAAATAGAT
CAATGCAGCTACCCTTCCGTACCTGGTCACTGCACAACTGAGATCAATGG
ATCTCCACAACAAACAACCTCCATCACTGCACTACCTGGCAACCAGGACT
CCCAGCCACCACCATATTCTACAAACAGCCCTGAGGTGTAAGTTGAGCAA
ATCACTGATTGCTTCAGGAGTGTTGATGGTTGCAGAGTTTGGTATTTCTC
TGTCAACTTCCATCGTCTGTTGCTCTTCTGGCTGCTCCAGACAGGGTGTC
ATACAGATTGTGATAGGTTGCATATCCATCCTGAGTGGAATCGCAATGGT
TTTTTACAGTTTCTTTGGAATTATTGGTGCTGGTATCTGGTCTGGTGCTT
GGTTTTTTACCACTGGGATAATTGGAGTTACCTCTGCTAGGAAACCTGCC
AATAGATGTTTACATTGGACCAACATGTCTTTCAATATTTTCAGTTCTGT
GATGTCCATTGCATTGGCATTCACTTTCCTCTGCTTCGGAATGCTAAGAA
AATCATGGAAACATCTCAACATCAGCCGATATTTATAATCCAACCACAAA
GAACAGAAAGAGGAAAAGATGGCAGTCAAATGCTTTGGAAGTTGGGGAGA
ATGGTGGAAATAGATCAATGCAGCTACCCTTCCGTACCTGGTCACTGCAC
AACTGAGATCAATGGATCTCCACAACAAACAACCTCCATCACTGCACTAC
CTGGCAACCAGGACTCCCAGCCACCACCATATTCTACAAACAGCCCTGAG
GTGTAAGTTGAGCAAATCACTGATTGCTTCAGGAGTGTTGATGGTTGCAG
AGTTTGGTATTTCTCTGTCAACTTCCATCGTCTGTTGCTCTTCTGGCTGC
TCCAGACAGGGTGTCATACAGATTGTGATAGGTTGCATATCCATCCTGAG
TGGAATCGCAATGGTTTTTTACAGTTTCTTTGGAATTATTGGTGCTGGTA
TCTGGTCTGGTGCTTGGTTTTTTACCACTGGGATAATTGGAGTTACCTCT
GCTAGGAAACCTGCCAATAGATGTTTACATTGGACCAACATGTCTTTCAA
TATTTTCAGTTCTGTGATGTCCATTGCATTGGCATTCACTTTCCTCTGCT
TCGGAATGCTAAGAAAATCATGGAAACATCTCAACATCAGCCGATATTTA
TAATCCAACCACAAAGAACAGAAAGAGGAAAAGATGGCAGTCAAATGCTT
TGGAAGTTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011564-exon-sc0000130-1575043694:182226..182326 | TCONS_00011564-exon-sc0000130-1575043694:182226..182326 | Clytia hemisphaerica | exon |
| TCONS_00011564-exon-sc0000130-1575043694:181505..181754 | TCONS_00011564-exon-sc0000130-1575043694:181505..181754 | Clytia hemisphaerica | exon |
| TCONS_00011564-exon-sc0000130-1575043694:181172..181275 | TCONS_00011564-exon-sc0000130-1575043694:181172..181275 | Clytia hemisphaerica | exon |
| TCONS_00011564-exon-sc0000130-1575043694:179791..180500 | TCONS_00011564-exon-sc0000130-1575043694:179791..180500 | Clytia hemisphaerica | exon |
| TCONS_00011564-exon-sc0000130-1510915933:182226..182326 | TCONS_00011564-exon-sc0000130-1510915933:182226..182326 | Clytia hemisphaerica | exon |
| TCONS_00011564-exon-sc0000130-1510915933:181505..181754 | TCONS_00011564-exon-sc0000130-1510915933:181505..181754 | Clytia hemisphaerica | exon |
| TCONS_00011564-exon-sc0000130-1510915933:181172..181275 | TCONS_00011564-exon-sc0000130-1510915933:181172..181275 | Clytia hemisphaerica | exon |
| TCONS_00011564-exon-sc0000130-1510915933:179791..180500 | TCONS_00011564-exon-sc0000130-1510915933:179791..180500 | Clytia hemisphaerica | exon |
| TCONS_00011564-exon-sc0000130-1491911889:182226..182326 | TCONS_00011564-exon-sc0000130-1491911889:182226..182326 | Clytia hemisphaerica | exon |
| TCONS_00011564-exon-sc0000130-1491911889:181505..181754 | TCONS_00011564-exon-sc0000130-1491911889:181505..181754 | Clytia hemisphaerica | exon |
| TCONS_00011564-exon-sc0000130-1491911889:181172..181275 | TCONS_00011564-exon-sc0000130-1491911889:181172..181275 | Clytia hemisphaerica | exon |
| TCONS_00011564-exon-sc0000130-1491911889:179791..180500 | TCONS_00011564-exon-sc0000130-1491911889:179791..180500 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000130 | supercontig | sc0000130:179791..182326 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR007237 | CD20-like |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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