TCONS_00011561 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011561
Unique NameTCONS_00011561
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length567

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011561 ID=TCONS_00011561|Name=TCONS_00011561|organism=Clytia hemisphaerica|type=transcript|length=567bp
CTGGTGGCGAAGATACTCTGAATTTGCCAATTATGATAACACCACCCAAC
ACTACCCAACAACGTGTTAGATGTATATATCATTTTCGAAATGTCCAAAG
CTTGATGAATACTGGAATCGCTTCAACTAAACCGCAAACCAAATCGGAAC
CGGAAACCAAAACGGAAATAAACAACTAGATCCGAAATGTTGTAAGGGGG
AAGACTCAAGCGATTCACCCAATCAagccaaacaaacaaacaaacggAGG
ATCGATTGAGGGAAGGGAGCGAAACAAGATAGGGAAGTAGCACAGGAGCA
AGAGGAGCAGCAAAATTGGTAACAAAGActaaaagaaacaaataaacGAA
AACCGAGTtttgaaaaaacgttttttttattagtcGAACATCTAGGACTG
TCATCAATAAAAATCGACACGCATTCACAAGTCTTAATCAACACATACCA
GGAGACATAACCAAATTCAGCAAATCGAGTATAACTGTCAAAGAAAAGAT
TGCCAGTGGTGCATTTGGGTCTGTTTTTAGAACAACATTCCACCATATGA
ATATTCAAGTAGCggtg
Run BLAST on NCBI

transcript from alignment at sc0000130:126972..129638-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011561 ID=TCONS_00011561|Name=TCONS_00011561|organism=Clytia hemisphaerica|type=transcript|length=2667bp|location=Sequence derived from alignment at sc0000130:126972..129638- (Clytia hemisphaerica)
CTGGTGGCGAAGATACTCTGAATTTGCCAATTATGATAACACCACCCAAC
ACTACCCAACAACGTGTTAGATGTATATATCATTTTCGAAATGTCCAAAG
GTAATTTGAATTTGTATGAATTTCTAATATTTCTATCCATAGTAACTATG
ACGATAGGCTTCTTGTGGCTTCTTCAGTTTTTGTCTACTCAATATCCCTC
TCACGCCCACGGCATGGGTTTTCCCAGAAAAAGTTACACATATGTACATT
CACTTGCTAAGTGAATTGTAGCAAAGAGTGGGAATCGAACCCTAATCATG
TTAATCAAGATTAAACCCTTTAACGACTTCTTCTTTTTATTTTTCCGAGG
AGTCAGGCGGTTTGTAAAATACCGCCACTAAATGACAAAGTATATCATCA
GAAAGTTCATCGGGGATTTGCGTCTATATAAAATAGCTGTACGTCATAGT
ACTTGTCAATCTTGAGATTTTAAGAGGGACCTCTAGGTATATAATAAAAC
ATATATTCAATTGGTTTTCGTTGGTTATTGGATTTATTAACCCTCGGTGA
TGTATTTTACATATTGAATATCTGCTTAGTATTCTCCGTAACTGCATAAC
CAATCTTTAGCTGCTGTCGTTTATTCTTAAGTTTTGCAGGCTCGTGCTTA
TTTTCTTTCTTTTTTGTAGCTTGATGAATACTGGAATCGCTTCAACTAAA
CCGCAAACCAAATCGGAACCGGAAACCAAAACGGAAATAAACAACTAGAT
CCGAAATGTTGTAAGGTAAGATATACATAACTTTCTCTAAGGGACCGTCC
ACATAGTACGTACGCACTAAGGGGTCTCAAAAGCGTATGCTTGCGATCAG
GGGAGGGGAGGGGTCAAAGGAAAATGTACGTACGCAGAGAAAGAAATTTC
ATAGCCTTATATTGCTTGTTTTTTGGTCAAGTTTTACGCTTCATATAAGC
ATCAAGGAAAAGAAAAAGTTTCTTAATAAACATCGAGTTTCATGTATGAA
ATAAAGGTCCGAACCAAACGATTTGAATTCGAAATTTTCTTCAACCGAGT
CGGGGGGGGGGGGGGAATTAAAAAAAAAAAAAAAGGCCCAAAAAAAAAAA
TTAAAATTCAAATTTTTTTTCAGCCGGGGGGGGGGGGGGAATTAAAAAAA
AAAAAAAAGGCCCAAAAAAAAAAATTAAAATTCAAATTTTTTTTCAGCCG
GGGGGGGGGGGGGAATTAAAAAAAAAAAAAAAGGCCCAAAAAAAAAAATT
AAAATTCAAATTTTTTTTCAGCCGGGGGGGGGGGGGGAATTAAAAAAAAA
AAAAAAGGCCCCAAAAAAAAAATTTTGATTTGAAATTTTTTTCACCCGGG
GGGGGGGGGGGGGGGTGAATTAAAAAGTACGTACTTACCAGGGGGTATAG
CCATTTGTGTACGCTTGCGTACAGGCCCCTAATTACGTGTTTTGAATATC
TTTGTAGGAACATGAGGCTTCGATGGATGGCCAAAATATTAGGAATAAGT
TAAGTTCATTAGGGAAATTCCTGTTCTTCATTTTTAGGGAAAATGAACTT
TCCTTGCGATAGGCTTGGTATTTTCTTTTCATCTTTTGCACAATGCAACT
TTGGGTGAAAACTGCTCAGAAATAGAGTTATTGTTTTTGGTTCCCATTCA
TATATCCCGTTCATATTTTTACATAATGATGGGAAATGGTAATCCTCAAA
ATGTGTAAAGGACAAAATGCCTGAATATCTCAGGGGAAATGAGATAGCCC
ATTTTCTCCTTACATCCAAAACATCGTAGAGTAAGCATAAAACAATTTTC
CTCATGCTTTCAAGCTTACGCATCACTGTATTATACTGGATTATAGTGGC
CTCCCCTTTTAAAAAAAGGGGGGCTCTTCTCTTGTCACACAAAATGGTTA
CATTTCAGGTTGTTACAACATCAACTTTTAATTTCATTTCATTCTGTTTG
AGTTTCATTGTATTTTCGTAGATAACGTGAAAAGAAGCAGCAAAAAGTAC
AAACATGAAAAAACTCTATTTAGGGGGGAGGGGCAGAGGATTTTTTTCGA
TTTCCAAGGGGGGTACCAACCTACCAGGACACTATGGCTGTTATCTTTAT
TTTTTTCTTTTTATTTTCATCATCATTCAGCATATTTTCGACTACCTTAA
TCAAGTCGGTCTATTCAGCATGTAGCTTGTTTGGTTTTACACATCACATT
TAAGGAACGCTTGACAAACTGGATAATATTTGGATTTCGTTCAAACTAAA
AAAAAAGTGCATTAATTCTAAGGTTTGAAATTTTATAAAATCTTAGGGGG
AAGACTCAAGCGATTCACCCAATCAAGCCAAACAAACAAACAAACGGAGG
ATCGATTGAGGGAAGGGAGCGAAACAAGATAGGGAAGTAGCACAGGAGCA
AGAGGAGCAGCAAAATTGGTAACAAAGACTAAAAGAAACAAATAAACGAA
AACCGAGTTTTGAAAAAACGTTTTTTTTATTAGTCGAACATCTAGGACTG
TCATCAATAAAAATCGACACGCATTCACAAGTCTTAATCAACACATACCA
GGAGACATAACCAAATTCAGCAAATCGAGTATAACTGTCAAAGAAAAGAT
TGCCAGTGGTGCATTTGGGTCTGTTTTTAGAACAACATTCCACCATATGA
ATATTCAAGTAGCGGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006480XLOC_006480Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011561-exon-sc0000130-1575043694:129539..129638TCONS_00011561-exon-sc0000130-1575043694:129539..129638Clytia hemisphaericaexon
TCONS_00011561-exon-sc0000130-1575043694:128874..128969TCONS_00011561-exon-sc0000130-1575043694:128874..128969Clytia hemisphaericaexon
TCONS_00011561-exon-sc0000130-1575043694:126972..127342TCONS_00011561-exon-sc0000130-1575043694:126972..127342Clytia hemisphaericaexon
TCONS_00011561-exon-sc0000130-1510915933:129539..129638TCONS_00011561-exon-sc0000130-1510915933:129539..129638Clytia hemisphaericaexon
TCONS_00011561-exon-sc0000130-1510915933:128874..128969TCONS_00011561-exon-sc0000130-1510915933:128874..128969Clytia hemisphaericaexon
TCONS_00011561-exon-sc0000130-1510915933:126972..127342TCONS_00011561-exon-sc0000130-1510915933:126972..127342Clytia hemisphaericaexon
TCONS_00011561-exon-sc0000130-1491911889:129539..129638TCONS_00011561-exon-sc0000130-1491911889:129539..129638Clytia hemisphaericaexon
TCONS_00011561-exon-sc0000130-1491911889:128874..128969TCONS_00011561-exon-sc0000130-1491911889:128874..128969Clytia hemisphaericaexon
TCONS_00011561-exon-sc0000130-1491911889:126972..127342TCONS_00011561-exon-sc0000130-1491911889:126972..127342Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000130supercontigsc0000130:126972..129638 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.594599	0.289914	0	0	0.267283	0.105605	0.509634	0.119278	0.250529	0.62064	0.401606	0.33	0.0659082	0.342232	0.900355	0.603887	0.595151	0.686262	0	0.220473	0.383261	0.140206	0.454504	0.516512	0.212798	0.0949587	0.135886	0.145021	0.109993	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011561 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top