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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011560 ID=TCONS_00011560|Name=TCONS_00011560|organism=Clytia hemisphaerica|type=transcript|length=630bp
CTGGACAAACACTCGATCAGTTGGATGGATGTGGTACAACTCTGGGAGTT
CGAGAATACCGAAATCCCAGGGTTTTACatgatcaaattaaaaaaagact
aaATAGGATGAACGGTTAAAACTTGCAGCTCAGTGGCTGACGGATACATT
TTTGAAAGGTGGGAAAATAGAGGCACTTTCCACACCTGGCTTGCAAAAGA
GGAAAGAAACAGGAGACTGTACCTGGCTATTCAAACTGTTGAAGGGCTGC
AAACTACAGTCAAGACATTCACTTCATTGATGCAAGAGCTGTTTGTCGAA
TATCCTGGATTTACATTTTGGGTGGTCGTCTTAGTCAGCCAACCTCAACT
TATGGGCAGGTCGTTCTGAGGgttttttctattgttaaattattgttatt
taattgttttgttagattttagctggatttgatttggatttccaaatgtt
tttttgtgaagtttcaaacaaaaatcaattGAGCAGAAAAAGTAAATACA
CATGCATAAAGACATACCTTCACACTTGTGACAGTCTGTGACATgagatg
aaaaatttgaagttataatctcaaagtttttgatcaTCTTATATCTGTAT
ATCTTCTCTTTTCTCtccaaaccagtccaa Run BLAST on NCBI transcript from alignment at sc0000130:68256..69336- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011560 ID=TCONS_00011560|Name=TCONS_00011560|organism=Clytia hemisphaerica|type=transcript|length=1081bp|location=Sequence derived from alignment at sc0000130:68256..69336- (Clytia hemisphaerica)
CTGGACAAACACTCGATCAGTTGGATGGATGTGGTACAACTCTGGGAGTT
CGAGAATACCGAAATCCCAGGGTTTTACATGATCAAATTAAAAAAAGACT
AAATAGGATGAACGGTTAAAACTTGCAGCTCAGGTAACTTCCATATTAAC
TCATTGAGTTCATTCTTATCCTATATTCTTCCATGGGATTAGTTTTTGTA
GCTATTCTCACCAGCTGCTAGTTCCCTTCAAGGGAAGGGTTAGGTGTTAC
TATTATCCAGATAATTCTACTCCATATATACAATGTGAAATGAAATCTCG
TGATTTTAAAGGAGCATTTTTTATTTGATAAGAGATAATGTTGACAGTTC
ACTTGTTCGTTGTGACCAAATTATAACTTCTTATCATTTTAGTGGCTGAC
GGATACATTTTTGAAAGGTGGGAAAATAGAGGCACTTTCCACACCTGGCT
TGCAAAAGAGGAAAGAAACAGGAGACTGTACCTGGCTATTCAAACTGTTG
AAGGGCTGCAAACTACAGGTTTGTAATAATTTTGCATTCAAAGGTTTTTT
TGTATGAAATAGTACAATGTTAATTCTTAAGCAATCAATGTTTCTCCGAG
TGCTCCTGGCCTTTAGAGGTTTTGGAGGTTTTTTTTTTTCAAAATAGAAA
ACCAACGCTTCCTCCGTCTTTTATTCTTTCAATCAGACTTTTTTCACTTT
TCATCTTTAGTCAAGACATTCACTTCATTGATGCAAGAGCTGTTTGTCGA
ATATCCTGGATTTACATTTTGGGTGGTCGTCTTAGTCAGCCAACCTCAAC
TTATGGGCAGGTCGTTCTGAGGGTTTTTTCTATTGTTAAATTATTGTTAT
TTAATTGTTTTGTTAGATTTTAGCTGGATTTGATTTGGATTTCCAAATGT
TTTTTTGTGAAGTTTCAAACAAAAATCAATTGAGCAGAAAAAGTAAATAC
ACATGCATAAAGACATACCTTCACACTTGTGACAGTCTGTGACATGAGAT
GAAAAATTTGAAGTTATAATCTCAAAGTTTTTGATCATCTTATATCTGTA
TATCTTCTCTTTTCTCTCCAAACCAGTCCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011560-exon-sc0000130-1575043694:69204..69336 | TCONS_00011560-exon-sc0000130-1575043694:69204..69336 | Clytia hemisphaerica | exon |
| TCONS_00011560-exon-sc0000130-1575043694:68819..68944 | TCONS_00011560-exon-sc0000130-1575043694:68819..68944 | Clytia hemisphaerica | exon |
| TCONS_00011560-exon-sc0000130-1575043694:68256..68626 | TCONS_00011560-exon-sc0000130-1575043694:68256..68626 | Clytia hemisphaerica | exon |
| TCONS_00011560-exon-sc0000130-1510915933:69204..69336 | TCONS_00011560-exon-sc0000130-1510915933:69204..69336 | Clytia hemisphaerica | exon |
| TCONS_00011560-exon-sc0000130-1510915933:68819..68944 | TCONS_00011560-exon-sc0000130-1510915933:68819..68944 | Clytia hemisphaerica | exon |
| TCONS_00011560-exon-sc0000130-1510915933:68256..68626 | TCONS_00011560-exon-sc0000130-1510915933:68256..68626 | Clytia hemisphaerica | exon |
| TCONS_00011560-exon-sc0000130-1491911889:69204..69336 | TCONS_00011560-exon-sc0000130-1491911889:69204..69336 | Clytia hemisphaerica | exon |
| TCONS_00011560-exon-sc0000130-1491911889:68819..68944 | TCONS_00011560-exon-sc0000130-1491911889:68819..68944 | Clytia hemisphaerica | exon |
| TCONS_00011560-exon-sc0000130-1491911889:68256..68626 | TCONS_00011560-exon-sc0000130-1491911889:68256..68626 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000130 | supercontig | sc0000130:68256..69336 - |
Blast
The following BLAST results are available for this feature:
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