TCONS_00011550 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011550
Unique NameTCONS_00011550
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length580

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011550 ID=TCONS_00011550|Name=TCONS_00011550|organism=Clytia hemisphaerica|type=transcript|length=580bp
GCTGCTGTTTTATTCCAACGTACATCTGGTCAACCTGTACAAACGTGCAT
CAAAACATGCAATGATTACATGGTCACCATCAACCCTTTGCTCACTGTCA
GTCAATTGAAGGTCGCTGTTGAAACAGGAATTACAACGATCCCCATCCCT
CTTGATGCCAACAATGTGTTTAGTTTGGATGGTCATTTAAATGAAGCAAC
CTCCAATGTTGTTCATATTTACGATGTGAGACCAGTCGTTGGTGAAGTCA
AACTTTCCAGCCTTTTTGTGGCTTACCAAGCCAAGCTTGCACTATCTCCA
ATTGAATTCTCGAACCAAACAATTTCACCAGTGAATGGAACCTACGCTTT
TAAATGGAGTTTGACAGAGGGATACGAGTTCGACATGAATTTCAAGATCT
CTGATAACCTGACAGTGGAGCATTCTTTTCCTGCACCTGGAGACTTCTTA
GTGGCGGTTATACAAGTACCTCAGGCCGATGTTGATTTGGgTTTTCCACC
GACATTGACGTTGACAGGGAAGGGCCGATACAAAGAGGAAGCCGTCTTCA
ACGTGATCGAAGATGTTCCAACCACGCCAC
Run BLAST on NCBI

protein sequence of TCONS_00011550-protein

>TCONS_00011550-protein ID=TCONS_00011550-protein|Name=TCONS_00011550-protein|organism=Clytia hemisphaerica|type=polypeptide|length=193bp
AAVLFQRTSGQPVQTCIKTCNDYMVTINPLLTVSQLKVAVETGITTIPIP
LDANNVFSLDGHLNEATSNVVHIYDVRPVVGEVKLSSLFVAYQAKLALSP
IEFSNQTISPVNGTYAFKWSLTEGYEFDMNFKISDNLTVEHSFPAPGDFL
VAVIQVPQADVDLGFPPTLTLTGKGRYKEEAVFNVIEDVPTTP
Run BLAST on NCBI

transcript from alignment at sc0000130:432744..436948+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011550 ID=TCONS_00011550|Name=TCONS_00011550|organism=Clytia hemisphaerica|type=transcript|length=4205bp|location=Sequence derived from alignment at sc0000130:432744..436948+ (Clytia hemisphaerica)
GCTGCTGTTTTATTCCAACGTACATCTGGTCAACCTGTACAAACGTGCAT
CAAAACATGCAATGATTACATGGTCACCATCAACCCTTTGCTCACTGTCA
GGTACATTGATTTTAAAGTGGCTTTTACACAAACGCAAGATTGAAAGTAA
GACCCATCGCCAGATTTCAAAAGATAAGAAAGTAAAGTAAAGAATATGTG
ACCCAGAAAAAAGTATAACGGTTTGAAGGGTACAGCTATGTCCGAAATGa
tttgaatttttactaaattattttttccattgtatagaggaaaggcaaac
ttaaaatttggttcaGTGGTTGTCAaattataagcttttgaagtcaaaat
tcacttttgaaaaatgtcaaaaatcatCTTGAAAATggggtatcaaattt
taatcaattaaacacaaataaaaagttaatttaTTAATTTCTTTTATTAA
ATCAACAAGATTTGGGAATGTGAACAACAAGGAtagaatatttttctttc
ttcttttggtTTGAATGTTTGAACCATACAGCACCATAACAAAGCATTCT
CAATGTTCAAGCTTAGATTAACGACATTAATAAATCTTTTTAACGACTTT
TAAGTCATTATTCTAAGCTTGAAAGCTTGAACATTGATATGGTGTTGTAT
GGTTCATTCAatttgataccctgtttttgatgatttttgacatttttcaa
aagtgaattttgacttcaaaagcttTTAACTTGAGAACCACTGAATAAGA
TTTAAAGACAATACGTTGTTTACGCCGTCTCTCATTACTTTGTGATTAGA
CCACTTCTCACGGAACCACCTATACCAATCGAAAGCTAAAAAAACGATCG
ATaagacttttaagtggatataGTTGGGAAATTCGAGTAAATCGACTGGG
AATGACGTCAAAACGTAATTTTGACGTTAATTTTCTCGAGATAGGTTGAG
AAATCGACAATATCAACTTGAAAGTCCTCTATATCGTTTTTTTAGAGCTT
TCGATCGGTATAAGTCGTTTTCGGTTgaaatttcgtcaaatttttggggt
taaGGGATTTTGCCTGTGACGTCAGTTTCAGAGTCCTAAAAAGTTTTTCT
AGGCCTTAGAAAAGAACCCCTCGTGAAAAACTCTTAAAATACTTCATTCT
TTGAAATGGACCAGGTTTGGTTGCGTAGTATAAAATATGTTACGGGTCCT
AAAGGTTTGCTTCCTACTAAAAgtattataaattttttatggtcagAAGG
ATTAGTTAATTTTTGAAACCGTCGACCTCTGGTTTATACTCTAgaggctg
agttaggtcccgtatgcgcatcggcgtatagtcattttttcttttgatca
tgaaagtatagtccttgaagagtcagaaaacgtgtgtNgttttgatatag
gggatgagtatcgtgtataaaattcccgcccgagagttacccccgtcttt
gtgttttttggGGTTAAGGGCCTTGATTAGTTTTTGTACGAGAAATCTTC
AAATTTCATGAAATgttcaataaaattttgaatggctAGAGGTTAATATA
TCGTTAGANtcaaccctttttagccctcttgcttgaaaaacttagaaaac
gtaagtacttcgtatctcttgataacgaaattttctgaccatggttctga
cctttttcttaatcagcataaaatttctgatcgattggtatataatatgc
agggttttaagctcaaaaaatatttttcttagcctagcagagcctaagaa
tattttgaatccgccattatggatttcgaaattcatgtagaaaaaaaact
tttcctgaattttattatttgaacggtaggcaagaccctccgaaaatttc
aagtaaatcaagtaagccaatcaaatgttacagccacgcaattctggaac
caaaagtagtcatttcaaaaaatcaaaatcgaaagtgcttcatatctcca
gataacgaaattttcagaccatgattctgacctttttcttaatcagcata
aaatttttgatcgattggtatataatatgtctatgtttaaagtcaaaaaa
gagggctaaaaagggttgaaaatctaaaatccgccattatggaaatttga
gcctgatccaaataacgccacacacgttttctgactcttcaaggactata
ctttcatgatcaaaagaaaaaatgactatacgccgatgcgcatacgggac
ttaagtcagcccctagagtattaGATGGTTGTTTCAAATGCAGGTTTGAA
AAGGTTTTCCAGATAGGAATGTTGTCTGTCTGAATCCTTGGAAAACGCCA
TATGCATTACTCAGTGCTTGGGCGCCAAATTCTTTTTTCCAGATTATTGT
GTTACGTTACCAGAAAATCATTTTTGGACACTTCTAACGGTAGCGAGTTT
TTTGCTAGTACCTGTAGCTAGTACACTATTTAGAGTTGAAAATATTACTT
GAAAATATACCTAATATCCCGCATCATTTCAGATTTCCCATTGTTTTAAA
TTGACGTTTAGAGAGGCTCTTTTACTCAATCTAGAGGGTATAAAATCCAA
AAGATCCGGGCCGTCGAGCCCAACAATGGTGGGCCCTCCTTATATATTAA
ACTTATGGCCCCCCTAAAGCGAATTTTGTATGTATAGCACTTTCACTGTC
ATAGTTTAACAGAAGATGTTTTTCATCTTTCCAGTCAATTGAAGGTCGCT
GTTGAAACAGGAATTACAACGATCCCCATCCCTCTTGATGCCAACAATGT
GTTTAGTTTGGATGGTCATTTAAATGAAGCAACCTCCAATGTTGTTCATA
TTTACGATGTGAGACCAGTCGTTGGTGAAGTCAAACTTTCCAGCCTTTTT
GTGGCTTACCAAGCCAAGCTTGCACTATCTCCAATTGAATTCTCGAACCA
AACAATTTCACCAGTGAATGGAACCTACGCTGTAAGTCATATCTAATTCT
ATTCCATAAAGAATTCGCACATTTTGATACTTTTCccttgaaagaaagaa
aaacaaaatggaagTAACAcatgattttaaggctttaaNcttgaaagaaa
gaaaaacaaaatgaaagtaACACTCACATCTCTGACATttcttttgacgt
tttttgactCTTAAACACGACTAGGACCTAAGCTAGTCGCCTTGCAAAGC
AAAGCATTGTTTGTAAAAGCTTGAAATTAAGAAATCAAAACACAagttga
atgtttgaaaaaaacctCCCTGTAGCAGTCTCAATCCTTTGCGCCAGGGT
TATTAGTCAGACCCTGGAAAACGGCGAAGACCTTGAAATTATATTCGTCA
TAAATATTTTAGGGAAGATCTGGGAAACTCGGTgatttgttttctttcaa
atcgtTAAAATGTCTCTCCTTTCTTCAACAAAATTTCTGTAAGTATTCAA
TGAAAATGATCCTTATTCTGCTGAAAGACTTCTCAGGGTACAgcaaacat
ctccgccactgcttactccacccgaatttatcacgccactcctaaactat
tccctttttagtgatcttgtgtagacgataggatcgtctaggtACAGACA
AACTAGTACGGCAAAATTGGCATAAAGGCATCGTTTTTCAAACCTTCTTT
GTTCTCATAGTTTAAATGGAGTTTGACAGAGGGATACGAGTTCGACATGA
ATTTCAAGATCTCTGATAACCTGACAGTGGAGCATTCTTTTCCTGCACCT
GGAGACTTCTTAGTGGCGGTTATACAAGTACCTCAGGCCGATGTTGATTT
GGGTAAGTTCAGAGAATATTTTCCTTTACCACTATTTGTATTTAATCGCG
GATATCTCTGATAAGCATCCCTTTCTTAGGGATGCTTATCAGAGATATCC
GCCTTACCGCCTTCTTCAACTTACAACATCTTTTATACTGCATTAAcaga
tttcataatttttcatgtttttcactGACATTGAAcagatttcataattt
ttcatgtttttcaccGACATTGAACatgtttcataatttttcaggttttt
cacCGACATTGAAtcaatttaataatttttcaggttttttacCGATATTG
AATcgatttaatatttttttaggtttttcgcCGAGCGATATTGAatcaat
ttctcaaatttttaggTTTTCCACCGACATTGACGTTGACAGGGAAGGGC
CGATACAAAGAGGAAGCCGTCTTCAACGTGATCGAAGATGTTCCAACCAC
GCCAC

Coding sequence (CDS) from alignment at sc0000130:432744..436948+

>TCONS_00011550 ID=TCONS_00011550|Name=TCONS_00011550|organism=Clytia hemisphaerica|type=CDS|length=2316bp|location=Sequence derived from alignment at sc0000130:432744..436948+ (Clytia hemisphaerica)
GCTGCTGTTTTATTCCAACGTACATCTGGTCAACCTGTACAAACGTGCAT
CAAAACATGCAATGATTACATGGTCACCATCAACCCTTTGCTCACTGTCA
GTCAATTGAAGGTCGCTGTTGAAACAGGAATTACAACGATCCCCATCCCT
CTTGATGCCAACAATGTGTTTAGTTTGGATGGTCATTTAAATGAAGCAAC
CTCCAATGTTGTTCATATTTACGATGTGAGACCAGTCGTTGGTGAAGTCA
AACTTTCCAGCCTTTTTGTGGCTTACCAAGCCAAGCTTGCACTATCTCCA
ATTGAATTCTCGAACCAAACAATTTCACCAGTGAATGGAACCTACGCTTT
TAAATGGAGTTTGACAGAGGGATACGAGTTCGACATGAATTTCAAGATCT
CTGATAACCTGACAGTGGAGCATTCTTTTCCTGCACCTGGAGACTTCTTA
GTGGCGGTTATACAAGTACCTCAGGCCGATGTTGATTTGGgTTTTCCACC
GACATTGACGTTGACAGGGAAGGGCCGATACAAAGAGGAAGCCGTCTTCA
ACGTGATCGAAGATGTTCCAACCACGCCAGCTGCTGTTTTATTCCAACGT
ACATCTGGTCAACCTGTACAAACGTGCATCAAAACATGCAATGATTACAT
GGTCACCATCAACCCTTTGCTCACTGTCAGTCAATTGAAGGTCGCTGTTG
AAACAGGAATTACAACGATCCCCATCCCTCTTGATGCCAACAATGTGTTT
AGTTTGGATGGTCATTTAAATGAAGCAACCTCCAATGTTGTTCATATTTA
CGATGTGAGACCAGTCGTTGGTGAAGTCAAACTTTCCAGCCTTTTTGTGG
CTTACCAAGCCAAGCTTGCACTATCTCCAATTGAATTCTCGAACCAAACA
ATTTCACCAGTGAATGGAACCTACGCTTTTAAATGGAGTTTGACAGAGGG
ATACGAGTTCGACATGAATTTCAAGATCTCTGATAACCTGACAGTGGAGC
ATTCTTTTCCTGCACCTGGAGACTTCTTAGTGGCGGTTATACAAGTACCT
CAGGCCGATGTTGATTTGGgTTTTCCACCGACATTGACGTTGACAGGGAA
GGGCCGATACAAAGAGGAAGCCGTCTTCAACGTGATCGAAGATGTTCCAA
CCACGCCAGCTGCTGTTTTATTCCAACGTACATCTGGTCAACCTGTACAA
ACGTGCATCAAAACATGCAATGATTACATGGTCACCATCAACCCTTTGCT
CACTGTCAGTCAATTGAAGGTCGCTGTTGAAACAGGAATTACAACGATCC
CCATCCCTCTTGATGCCAACAATGTGTTTAGTTTGGATGGTCATTTAAAT
GAAGCAACCTCCAATGTTGTTCATATTTACGATGTGAGACCAGTCGTTGG
TGAAGTCAAACTTTCCAGCCTTTTTGTGGCTTACCAAGCCAAGCTTGCAC
TATCTCCAATTGAATTCTCGAACCAAACAATTTCACCAGTGAATGGAACC
TACGCTTTTAAATGGAGTTTGACAGAGGGATACGAGTTCGACATGAATTT
CAAGATCTCTGATAACCTGACAGTGGAGCATTCTTTTCCTGCACCTGGAG
ACTTCTTAGTGGCGGTTATACAAGTACCTCAGGCCGATGTTGATTTGGgT
TTTCCACCGACATTGACGTTGACAGGGAAGGGCCGATACAAAGAGGAAGC
CGTCTTCAACGTGATCGAAGATGTTCCAACCACGCCAGCTGCTGTTTTAT
TCCAACGTACATCTGGTCAACCTGTACAAACGTGCATCAAAACATGCAAT
GATTACATGGTCACCATCAACCCTTTGCTCACTGTCAGTCAATTGAAGGT
CGCTGTTGAAACAGGAATTACAACGATCCCCATCCCTCTTGATGCCAACA
ATGTGTTTAGTTTGGATGGTCATTTAAATGAAGCAACCTCCAATGTTGTT
CATATTTACGATGTGAGACCAGTCGTTGGTGAAGTCAAACTTTCCAGCCT
TTTTGTGGCTTACCAAGCCAAGCTTGCACTATCTCCAATTGAATTCTCGA
ACCAAACAATTTCACCAGTGAATGGAACCTACGCTTTTAAATGGAGTTTG
ACAGAGGGATACGAGTTCGACATGAATTTCAAGATCTCTGATAACCTGAC
AGTGGAGCATTCTTTTCCTGCACCTGGAGACTTCTTAGTGGCGGTTATAC
AAGTACCTCAGGCCGATGTTGATTTGGgTTTTCCACCGACATTGACGTTG
ACAGGGAAGGGCCGATACAAAGAGGAAGCCGTCTTCAACGTGATCGAAGA
TGTTCCAACCACGCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006472XLOC_006472Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011550-exon-sc0000130-1491911889:432744..432844TCONS_00011550-exon-sc0000130-1491911889:432744..432844Clytia hemisphaericaexon
TCONS_00011550-exon-sc0000130-1510915933:432744..432844TCONS_00011550-exon-sc0000130-1510915933:432744..432844Clytia hemisphaericaexon
TCONS_00011550-exon-sc0000130-1575043694:432744..432844TCONS_00011550-exon-sc0000130-1575043694:432744..432844Clytia hemisphaericaexon
TCONS_00011550-exon-sc0000130-1491911889:435428..435674TCONS_00011550-exon-sc0000130-1491911889:435428..435674Clytia hemisphaericaexon
TCONS_00011550-exon-sc0000130-1510915933:435428..435674TCONS_00011550-exon-sc0000130-1510915933:435428..435674Clytia hemisphaericaexon
TCONS_00011550-exon-sc0000130-1575043694:435428..435674TCONS_00011550-exon-sc0000130-1575043694:435428..435674Clytia hemisphaericaexon
TCONS_00011550-exon-sc0000130-1491911889:436354..436495TCONS_00011550-exon-sc0000130-1491911889:436354..436495Clytia hemisphaericaexon
TCONS_00011550-exon-sc0000130-1510915933:436354..436495TCONS_00011550-exon-sc0000130-1510915933:436354..436495Clytia hemisphaericaexon
TCONS_00011550-exon-sc0000130-1575043694:436354..436495TCONS_00011550-exon-sc0000130-1575043694:436354..436495Clytia hemisphaericaexon
TCONS_00011550-exon-sc0000130-1491911889:436859..436948TCONS_00011550-exon-sc0000130-1491911889:436859..436948Clytia hemisphaericaexon
TCONS_00011550-exon-sc0000130-1510915933:436859..436948TCONS_00011550-exon-sc0000130-1510915933:436859..436948Clytia hemisphaericaexon
TCONS_00011550-exon-sc0000130-1575043694:436859..436948TCONS_00011550-exon-sc0000130-1575043694:436859..436948Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011550-proteinTCONS_00011550-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000130supercontigsc0000130:432744..436948 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.191255	0	0.216548	0.211859	0	0	0.122944	0	0.0805833	0.0998154	0	0.191062	0	0.0660479	0.108601	0.23309	0	0.220738	0	0.212747	1.29441	0.811759	0.767511	1.89397	3.59348	4.21504	0	0.139939	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000601PKD_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011550 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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