TCONS_00011548 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011548
Unique NameTCONS_00011548
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length498

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011548 ID=TCONS_00011548|Name=TCONS_00011548|organism=Clytia hemisphaerica|type=transcript|length=498bp
GAGCAACTATAACTGTATTAAGATGTGTTGGATATCAAACCATGTTGGCC
ACGGACACCTTACATCACTGATTGCCAACCCAAACCAGTAGAACCGCTTA
TTCAACCCGAATGTGATCAACCGTCGCAAAATGCTTACAAAGAAGCGAAG
AAGGCTTTGAAGAATTTTGGATTCAATTCATTCCGTGAAGGCCAACATGA
AGCCACCGCGAGAATTCTCTCAGGTTTATCGACACTGGTAATCCTGGCCA
CAGGCTCCGGAAAATCACTTTGTTATCAACTACCAGCCTACATGTATTAC
AACGAACGGAAATGGTTGACCTTGGTTGTCTCCCCTCTGGTCGCCCTCAT
GCAAGATCAGGTAGCAGGTTTACCAGATTGTTTACCAGGCGCCGCTTTGA
ACAGCAACATGACGAAACTTCAACAACAAAAAGTTGTCACCAAACTCAAA
GAAGGAAAGATCGCCATCCTGTTGGTTTCTCCAGAAGCTCTTGTATCT
Run BLAST on NCBI

transcript from alignment at sc0000130:418592..420436+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011548 ID=TCONS_00011548|Name=TCONS_00011548|organism=Clytia hemisphaerica|type=transcript|length=1845bp|location=Sequence derived from alignment at sc0000130:418592..420436+ (Clytia hemisphaerica)
GAGCAACTATAACTGTATTAAGGTAGTGATTTGTTCTTAACGTGcttcat
ttttcgaaatcttgctATAGATTCACTTTCAATCCAACGCTTGTTTGTTG
GGCCATGCTTTTAGGATTGGAAATAAGGTTCATTTCCCATCAAAGAGGTT
CCTCTCTAGGCCTCTGGGATTTATTCCTATCTAGGCCTCTGGGATTTAAA
CTTGTACAAACGGCATAAGGCATTGCAATCATTACCTTCCTCTCCATATT
CAAGAAACGTTAGCGCCGAATGTTGTGACGGCGTTAACAAGTCAATGCTT
TATTCAAAAGTAACTGAACCTTTCTTTATCTACGACTTCATATGTTCCAT
CAACCACAAGACTTTCTTACATTCTCATTTTCTTGCAGATGTGTTGGATA
TCAAACCATGTTGGCCACGGACACCTTACATCACTGATTGCCAACCCAAA
CCAGTAGAACCGCTTATTCAACCCGAATGTGATCAACCGTCGCAAAGTAG
GTTCTATGTTCTATTTGCTTTTGCTATTTTCCCACCAATAATTTAATCAC
TTACAAGCATATATTTATAAGGGCCAAAGGGCTCAATGTCGTACTTTTGC
TAAAAAGTGGAAAGACggcaaaatttgcgaaaaacccccctggaaaaaaa
gatTCCATCGTCCTTGGGAAAATTATTCTTTATACCGTAAAGTGAGGTTG
GATGAACTTTTATCCCTCGGAAATAAGATGCTTAGCCCGTCCAACTCCTT
GAAAAAAACAACTCGAATCAAACTCCCTGGAGAAAGTCAAATTCAAAAGC
TGTCCTTAGAACCCCTGGAATTTTTTCTTTGGGGAGTCCACCATATATGG
ATATTAAATGATATGGTTCAAAAGGAACATTCTAAAATGAAATCAATATC
TGCGTTTTCTTTAGATGCTTACAAAGAAGCGAAGAAGGCTTTGAAGAATT
TTGGATTCAATTCATTCCGTGAAGGCCAACATGAAGCCACCGCGAGAATT
CTCTCAGGTGTGTTTGCCTTTTTCGTTTGCGTGTGCATCTAAAAAATGTT
CTCTCTATCGAGAATCTCGATCAAAGTCAAAGAATCCCTTAAAACTTTCA
GGAATGGGCATTGGACCTTCGTGGTCAATATggtagtttttgatttttaa
gaatattaatATTCTCAACAGAACTACAGGGCTGCTGGAAAACTCGTCTC
GCTTGCAGGTTACAACAATGGAGGCGTAACACTACACAGGGTTGCCtctt
attattttcatttctttgttgAAGGTTTATCGACACTGGTAATCCTGGCC
ACAGGCTCCGGAAAATCACTTTGTTATCAACTACCAGCCTACATGTATTA
CAACGAACGGAAATGGTTGACCTTGGTTGTCTCCCCTCTGGTCGCCCTCA
TGCAAGATCAGGTGAAAAATTATTGCGCATAGAAAATGCACAATAAAAAC
TTAAAGTTTTTGTGTCAAGTGATAATTAGATCAAAATACGTTGGTAATGG
CTCTGTATTTTTATTAAAAGGCTGACTTACCCTCAAATCAGCTCAAATCA
TTATCATTTTTTCTAGTTAAGGTTTTATACCATGGCTCATAATGAGCATA
AGTGAGACTGAATAAGgtagaaaatttcattcattcattcattcattcNT
TTCATCTATCCTTTGGCTTTACTTGAATAAGGTAGaaatttcattcattt
attcCAGGTAGCAGGTTTACCAGATTGTTTACCAGGCGCCGCTTTGAACA
GCAACATGACGAAACTTCAACAACAAAAAGTTGTCACCAAACTCAAAGAA
GGAAAGATCGCCATCCTGTTGGTTTCTCCAGAAGCTCTTGTATCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006470XLOC_006470Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011548-exon-sc0000130-1491911889:418592..418613TCONS_00011548-exon-sc0000130-1491911889:418592..418613Clytia hemisphaericaexon
TCONS_00011548-exon-sc0000130-1510915933:418592..418613TCONS_00011548-exon-sc0000130-1510915933:418592..418613Clytia hemisphaericaexon
TCONS_00011548-exon-sc0000130-1575043694:418592..418613TCONS_00011548-exon-sc0000130-1575043694:418592..418613Clytia hemisphaericaexon
TCONS_00011548-exon-sc0000130-1491911889:418980..419087TCONS_00011548-exon-sc0000130-1491911889:418980..419087Clytia hemisphaericaexon
TCONS_00011548-exon-sc0000130-1510915933:418980..419087TCONS_00011548-exon-sc0000130-1510915933:418980..419087Clytia hemisphaericaexon
TCONS_00011548-exon-sc0000130-1575043694:418980..419087TCONS_00011548-exon-sc0000130-1575043694:418980..419087Clytia hemisphaericaexon
TCONS_00011548-exon-sc0000130-1491911889:419506..419598TCONS_00011548-exon-sc0000130-1491911889:419506..419598Clytia hemisphaericaexon
TCONS_00011548-exon-sc0000130-1510915933:419506..419598TCONS_00011548-exon-sc0000130-1510915933:419506..419598Clytia hemisphaericaexon
TCONS_00011548-exon-sc0000130-1575043694:419506..419598TCONS_00011548-exon-sc0000130-1575043694:419506..419598Clytia hemisphaericaexon
TCONS_00011548-exon-sc0000130-1491911889:419866..420002TCONS_00011548-exon-sc0000130-1491911889:419866..420002Clytia hemisphaericaexon
TCONS_00011548-exon-sc0000130-1510915933:419866..420002TCONS_00011548-exon-sc0000130-1510915933:419866..420002Clytia hemisphaericaexon
TCONS_00011548-exon-sc0000130-1575043694:419866..420002TCONS_00011548-exon-sc0000130-1575043694:419866..420002Clytia hemisphaericaexon
TCONS_00011548-exon-sc0000130-1491911889:420299..420436TCONS_00011548-exon-sc0000130-1491911889:420299..420436Clytia hemisphaericaexon
TCONS_00011548-exon-sc0000130-1510915933:420299..420436TCONS_00011548-exon-sc0000130-1510915933:420299..420436Clytia hemisphaericaexon
TCONS_00011548-exon-sc0000130-1575043694:420299..420436TCONS_00011548-exon-sc0000130-1575043694:420299..420436Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000130supercontigsc0000130:418592..420436 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.633597	0	0	0	0.495627	1.18919	0	2.31982	0	0	0	1.51478	0.662484	1.05203	0.563525	0.619226	1.1303	0	0.381361	0	0.0605425	0	0	0.355048	0.509394	2.87139	0	0.0720014	0.584794	0
Blast
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BLAST of TCONS_00011548 vs. Swiss-Prot (Human)
Match: RECQ4 (ATP-dependent DNA helicase Q4 OS=Homo sapiens GN=RECQL4 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 7.697e-30
Identity = 62/118 (52.54%), Postives = 87/118 (73.73%), Query Frame = 1 
Query:  142 EAKKALKNFGFNSFREGQHEATARILSGLSTLVILATGSGKSLCYQLPAYMYYNERKWLTLVVSPLVALMQDQVAGLPDCLPGAALNSNMXXXXXXXXXXXXXEGKIAILLVSPEALV 495
            E  +AL+  G  +FR GQ  A  RILSG+STL++L TG+GKSLCYQLPA +Y      LTLVVSPL++LM DQV+GLP CL  A ++S MT+ Q++ V+ K++  ++ +L+++PEALV
Sbjct:  468 EVFQALEQLGHQAFRPGQERAVMRILSGISTLLVLPTGAGKSLCYQLPALLYSRRSPCLTLVVSPLLSLMDDQVSGLPPCLKAACIHSGMTRKQRESVLQKIRAAQVHVLMLTPEALV 585
The following BLAST results are available for this feature:
BLAST of TCONS_00011548 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RECQ47.697e-3052.54ATP-dependent DNA helicase Q4 OS=Homo sapiens GN=R... [more]
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