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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011546 ID=TCONS_00011546|Name=TCONS_00011546|organism=Clytia hemisphaerica|type=transcript|length=4711bpRun BLAST on NCBI transcript from alignment at sc0000130:414644..425142+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011546 ID=TCONS_00011546|Name=TCONS_00011546|organism=Clytia hemisphaerica|type=transcript|length=10499bp|location=Sequence derived from alignment at sc0000130:414644..425142+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00011546 vs. Swiss-Prot (Human)
Match: RECQ4 (ATP-dependent DNA helicase Q4 OS=Homo sapiens GN=RECQL4 PE=1 SV=1) HSP 1 Score: 322.783 bits (826), Expect = 1.081e-108 Identity = 165/344 (47.97%), Postives = 219/344 (63.66%), Query Frame = 2
Query: 1916 AGLPDCLPGAALNSNMXXXXXXXXXXXXXEGKIAILLVSPEALVSGGFGTGILPPKSSLPPIGFACIDEAHCLSEWSHNFRPSYLKVCKVLRERYQIGCLLGLTATASNKTAKSVIQHLGVPDEGSIIRDPSPIPDNLQLTASRDERRDIALVELLHNEPFVKCDSIIVYVTRRMDCDRLAVLLRTSLPEFVRDXXXXXXXXXXXXXXXXXXXXXXXXXXDMDKPTWWNCEAYHAGLSPAQRKRVQNQFMAGDLRIVVATVAFGMGLDKSDVRSVIHYNMPKSFENYVQEIGRAGRDGKPSFCHVFLEDEVTDLCELKRHIYGDTVDRSAITRFVDLLFPVCDC 2947
+GLP CL A ++S MT+ Q++ V+ K++ ++ +L+++PEALV G G LPP + LPP+ FACIDEAHCLS+WSHNFRP YL+VCKVLRER + C LGLTATA+ +TA V QHL V +E + P+P+P NL L+ S D D AL+ LL + F DSII+Y RR D +R+A LLRT L + EAYHAG+ +R+RVQ FM G LR+VVATVAFGMGLD+ DVR+V+H +P SFE+YVQ +GRAGRDG+P+ CH+FL+ + DL EL+RH++ D+ D A+ R V +FP C C
Sbjct: 542 SGLPPCLKAACIHSGMTRKQRESVLQKIRAAQVHVLMLTPEALV----GAGGLPPAAQLPPVAFACIDEAHCLSQWSHNFRPCYLRVCKVLRERMGVHCFLGLTATATRRTASDVAQHLAVAEEPD-LHGPAPVPTNLHLSVSMDRDTDQALLTLLQGKRFQNLDSIIIYCNRREDTERIAALLRTCL-------------------------HAAWVPGSGGRAPKTTAEAYHAGMCSRERRRVQRAFMQGQLRVVVATVAFGMGLDRPDVRAVLHLGLPPSFESYVQAVGRAGRDGQPAHCHLFLQPQGEDLRELRRHVHADSTDFLAVKRLVQRVFPACTC 855 HSP 2 Score: 92.4337 bits (228), Expect = 1.081e-108 Identity = 43/73 (58.90%), Postives = 53/73 (72.60%), Query Frame = 3
Query: 1698 EAKKALKNFGFNSFREGQHEATARILSGLSTLVILATGSGKSLCYQLPAYMYYNERKWLTLVVSPLVALMQDQ 1916
E +AL+ G +FR GQ A RILSG+STL++L TG+GKSLCYQLPA +Y LTLVVSPL++LM DQ
Sbjct: 468 EVFQALEQLGHQAFRPGQERAVMRILSGISTLLVLPTGAGKSLCYQLPALLYSRRSPCLTLVVSPLLSLMDDQ 540 HSP 3 Score: 179.489 bits (454), Expect = 3.174e-45 Identity = 105/320 (32.81%), Postives = 164/320 (51.25%), Query Frame = 2
Query: 3479 VCSGHRRSISSDRLINDLDMREEVISTFLAYLELHPKTWLRMLNPLRATCIIKCYGGPEQFQMMAKKFPPVALALRYLLPQDELTNLHERRQLEFDFVEVADLMCWDVLTVLRELKALQWNMSFALDSRLNTTGKSGIIVQTENLSFHFTTASNVDDDGRDEIIGFIHQTVLNQEETRLLQL----DALYCVLKELSCKTYEQIPADRRIDVKARQQIGQFFLCKEEQQKPFLRELITDDLKIDTPQRRWNNIASDIRSLVNSYPDSQFNGRAIARIFQGIDSPRFPALGYGRDRRFWRQYLDVDFNELRKFAIRELMRT 4426
VC GH R++ + LDM EE I T L YLELHP WL +L C + C GGP Q Q +A + PP+A+ L LP+D +EFD V++ D M W++ +V R L LQW+ + R +G++V+ L+FH + ++ + +D+I F++ V +E L +L A + V EQ D + + +G++F +E Q+ + + + Q + + DIR ++ P+ +F+ RA+ARIF GI SP +PA YG+DRRFWR+YL + F+ L A EL++
Sbjct: 896 VCMGHERALPIQLTVQALDMPEEAIETLLCYLELHPHHWLELLATTYTHCRLNCPGGPAQLQALAHRCPPLAVCLAQQLPEDPGQG---SSSVEFDMVKLVDSMGWELASVRRALCQLQWDH----EPRTGVRRGTGVLVEFSELAFHLRSPGDLTAEEKDQICDFLYGRVQARERQALARLRRTFQAFHSVAFPSCGPCLEQ--QDEERSTRLKDLLGRYFEEEEGQEPGGMEDAQGPEPGQARLQDWEDQVRCDIRQFLSLRPEEKFSSRAVARIFHGIGSPCYPAQVYGQDRRFWRKYLHLSFHALVGLATEELLQV 1206 The following BLAST results are available for this feature:
BLAST of TCONS_00011546 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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