|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011545 ID=TCONS_00011545|Name=TCONS_00011545|organism=Clytia hemisphaerica|type=transcript|length=2561bp
GCTTTGCAGTTTGGCCCCCTACTGTTTGACTTATTTCTCCATattcaaaa
caacatttttatagCATTGTCTACGTTATGCTTGTGTTAGCCAAAACCGA
GCTTTatactagtttgagtaaagaaaacgatttaatttcatactcaaagt
ttcatgccatcaaggatggcaatcttcagtgaaacTAGTATAGCATTGTC
TacaatattttggttttaaaagcAAAACAAGACCTTAGATAGTGCTATTT
GACATTTTCTGCTTTTGGCATAACTAACAAAATCGAGCTTCACAAACTGA
ATTTAAGTTTACTTTCTAACATGTTCTATGATGATAAAAATTAGCTGGAA
AAATACCTGCCTTCAAGACCAGACCCTGAATCTAGTTAGTGCACTGTAAT
TGGATTTGGTCACCTTTCTGActctttatttttaatattaatcctttttt
gcccattttactGAATAGACAAATAAATCTATTAATATGCCTGTGGAGGA
AGAAAAGGATGATTATTTTGAGTTTCGTGATGACATGTATAAAAGAAGAA
GTGCTGCCAATCATAATATCATAAAGAAACTTATGCATCGCCAAATCATC
TCACCAAAACCAAACACCCACTGCCAACAAGCAAGATCGTTTTGTTTAAA
TGTCTTCCCAAATTTCACTGTTGTTGATGTGGAGAAACCTCCATGCTTCT
TGAGGAAGTTTTCACCTGATGGCAGACATTTTGTTGCCTTTTCAAGAGAT
CAAAGTTCTattgaaatttatgaatttaaAGGGCCTAGTGCTGTGGAGCA
TTTATTACATAAAGCATGCCAAGGAAATCGAGAAGAAATAACAAACTTAA
AGACAAATATGTTTGAGAATTTTTTCCGCAAGAAAGCTGTTGTAACTGTC
ACACAATTTGGAGAGCATTTGAACCGAGAATGTAGTTTATTCACAGATGA
TGGGAAGTATGTAATTGTTGGTTCTGCATCCAGTATCCCTGAAGATTCTC
ATCCTTTGTTCTTTGATATCTACCAAAATAATGAATCAGTCACACCAAAT
AGNTAAGTTTACTTTCTAACATGTTCTATGATGATAAAAATTAGCTGGAA
AAATACCTGCCTTCAAGACCAGACCCTGAATCTAGTTAGTGCACTATAAT
TGGATTTGGTCACCTTTCTGNTAGTTTATTCACAGATGATGGGAAGTATG
TAATTGTTGGTTCTGCATCCAGTATCCCTGAAGATTCTCATCCTTTGTTC
TTTGATATCTACCAAAATAATGAATCAGTCACACCAAATAGTAGATCGCC
TTTAGAAAACTATTCTGTTCACATCGTTGACTTGTATTATGGTAGACTAC
AAGATTCTCGCTCTTTCAAATGTGATAAGATAGTATTACCACATAACCAA
GGAATTTATTTATACAAGGACACTTTGGCTGTATTATCTGTTCAGCATCA
AACCATTCATATATTTAAAGTCACTTCTGAAGGGTATTTTGTGGATGTAA
GAAAAATAGGACGTTTTTGTTATGAGGATGATGCAATAACCGTCAATCGA
CTACCGGAGATGCAAGCTGTTAGACCATTTCGTGATAAGTTTTTTAACAG
TTTGAAGCATAGGTTACTGACTTACCTTTTTAACCTCTCAGTCAGTGAAG
GTACCAGGGAAGCTGTACGCAGATATTACCAATATTTTGATCAGTTTAAG
AATTTGCGTGTTTGGAAAATGCAGTTGTTAGACGAACTTCATTTACTATT
GAGATATGCAACTGAAGATGTTGTAACCTTAAAGCCGTCTGACCCTAACT
CTCTGAACTCCTTTTATGCAATTTACAACATGGAAACTACCGAAgtgatt
gctgtttttgaaaactcTTCAGAAGTGTTTTTAGAAATCTTTGAACAATT
CAATGATTATTTTCGAAATGCTTTACCATGCCAAGTTGAACAGTTTACTT
GCTCAACTTCAAGCAACATCCATGCCCGCCACAACCAGCGCAGGTTCAAG
AGCACCATTGTTAATGCAAAGTATGGTGGACACAAAGAAGCAGTCAAACG
TCTTCTTGCTCAGCTACCGATCTGTGCTCAATCATTTAGTAGCAGTCCTT
ATTTGGATCTTTCACTGTTCAGCTATGACGATAAGTGGGTTTCAGTGATG
GAAAGACCCAAGAATTGCGGCGACCACCCCATAAAATTTTACTGTAGGGA
AACAGGGTTGATGAAGTACAAGATCTATGCAGGAGTTCACGGAAGACCAA
TGCCGCCATCAACCAGAAGACTTGTGGCTTTCACATTTCACCCCTTCTAT
CCTTTCGCTATTTCAGTTCAACGGAACAATGCAGATTATGTTTTGAACTT
TCATCTAAGACATTTTACTGGAACTGAGCATGACTCTGTATAGATCAAGG
GCACCATAAATTTAAAACTCAGAAAATTAAATCTTATcatttaaatttct
ttcaaaataagcACAGTTTTATGTCAACTTTTGGTATTCAAAATTCTTCA
ATTTCAAAGGATTTCTGACACATCTAAGTTTAAAAAAGGCTAGTATTTGG
TAATAGTAGTA Run BLAST on NCBI protein sequence of TCONS_00011545-protein >TCONS_00011545-protein ID=TCONS_00011545-protein|Name=TCONS_00011545-protein|organism=Clytia hemisphaerica|type=polypeptide|length=277bp
MQAVRPFRDKFFNSLKHRLLTYLFNLSVSEGTREAVRRYYQYFDQFKNLR
VWKMQLLDELHLLLRYATEDVVTLKPSDPNSLNSFYAIYNMETTEVIAVF
ENSSEVFLEIFEQFNDYFRNALPCQVEQFTCSTSSNIHARHNQRRFKSTI
VNAKYGGHKEAVKRLLAQLPICAQSFSSSPYLDLSLFSYDDKWVSVMERP
KNCGDHPIKFYCRETGLMKYKIYAGVHGRPMPPSTRRLVAFTFHPFYPFA
ISVQRNNADYVLNFHLRHFTGTEHDSV Run BLAST on NCBI transcript from alignment at sc0000130:411201..414054+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011545 ID=TCONS_00011545|Name=TCONS_00011545|organism=Clytia hemisphaerica|type=transcript|length=2854bp|location=Sequence derived from alignment at sc0000130:411201..414054+ (Clytia hemisphaerica)
GCTTTGCAGTTTGGCCCCCTACTGTTTGACTTATTTCTCCATattcaaaa
caacatttttatagCATTGTCTACGTTATGCTTGTGTTAGCCAAAACCGA
GCTTTatactagtttgagtaaagaaaacgatttaatttcatactcaaagt
ttcatgccatcaaggatggcaatcttcagtgaaacTAGTATAGCATTGTC
TacaatattttggttttaaaagcAAAACAAGACCTTAGATAGTGCTATTT
GACATTTTCTGCTTTTGGCATAACTAACAAAATCGAGCTTCACAAACTGA
ATTTAAGTTTACTTTCTAACATGTTCTATGATGATAAAAATTAGCTGGAA
AAATACCTGCCTTCAAGACCAGACCCTGAATCTAGTTAGTGCACTGTAAT
TGGATTTGGTCACCTTTCTGActctttatttttaatattaatcctttttt
gcccattttactGAATAGACAAATAAATCTATTAATATGCCTGTGGAGGA
AGAAAAGGATGATTATTTTGAGTTTCGTGATGACATGTATAAAAGAAGAA
GTGCTGCCAATCATAATATCATAAAGAAACTTATGCATCGCCAAATCATC
TCACCAAAACCAAACACCCACTGCCAACAAGCAAGATCGTTTTGTTTAAA
TGTCTTCCCAAATTTCACTGTTGTTGATGTGGAGAAACCTCCATGCTTCT
TGAGGAAGTTTTCACCTGATGGCAGACATTTTGTTGCCTTTTCAAGAGAT
CAAAGTTCTattgaaatttatgaatttaaAGGGCCTAGTGCTGTGGAGCA
TTTATTACATAAAGCATGCCAAGGAAATCGAGAAGAAATAACAAACTTAA
AGACAAATATGTTTGAGAATTTTTTCCGCAAGAAAGCTGTTGTAACTGTC
ACACAATTTGGAGAGCATTTGAACCGAGAATGTAGTTTATTCACAGATGA
TGGGAAGTATGTAATTGTTGGTTCTGCATCCAGTATCCCTGAAGATTCTC
ATCCTTTGTTCTTTGATATCTACCAAAATAATGAATCAGTCACACCAAAT
AGNTAAGTTTACTTTCTAACATGTTCTATGATGATAAAAATTAGCTGGAA
AAATACCTGCCTTCAAGACCAGACCCTGAATCTAGTTAGTGCACTATAAT
TGGATTTGGTCACCTTTCTGNTAGTTTATTCACAGATGATGGGAAGTATG
TAATTGTTGGTTCTGCATCCAGTATCCCTGAAGATTCTCATCCTTTGTTC
TTTGATATCTACCAAAATAATGAATCAGTCACACCAAATAGTAGATCGCC
TTTAGAAAACTATTCTGTTCACATCGTTGACTTGTATTATGGTAGACTAC
AAGATTCTCGCTCTTTCAAATGTGATAAGATAGTATTACCACATAACCAA
GGAATTTATTTATACAAGGACACTTTGGCTGTATTATCTGTTCAGCATCA
AACCATTCATATATTTAAAGTCACTTCTGAAGGGTATTTTGTGGATGTAA
GAAAAATAGGACGTTTTTGTTATGAGGATGATGCAATAACCGTCAATCGA
CTACCGGAGATGCAAGCTGTTAGACCATTTCGTGATAAGTTTTTTAACAG
TTTGAAGCATAGGTTACTGACTTACCTTTTTAACCTCTCAGTCAGTGAAG
GTACCAGGGAAGCTGTACGCAGATATTACCAATATTTTGATCAGTTTAAG
AATTTGCGTGTTTGGAAAATGCAGTTGTTAGACGAACTTCATTTACTATT
GAGATATGCAACTGAAGATGTTGTAACCTTAAAGCCGTCTGACCCTAACT
CTCTGAACTCCTTTTATGCAATTTACAACATGGAAACTACCGAAgtgatt
gctgtttttgaaaactcTTCAGAAGTGTTTTTAGAAATCTTTGAACAATT
CAATGATTATTTTCGAAATGCTTTACCATGCCAAGTTGAACAGTTTACTT
GCTCAACTTCAAGCAACATCCATGCCCGCCACAACCAGCGCAGGTTCAAG
AGCACCATTGTTAATGCAAAGTATGGTGGACACAAAGAAGCAGTCAAACG
TCTTCTTGCTCAGCTACCGATCTGTGCTCAATCATTTAGTAGCAGTCCTT
ATTTGGATCTTTCACTGTTCAGCTATGACGATAAGTGGGTTTCAGTGATG
GAAAGACCCAAGAATTGCGGCGACCACCCCATAAAGTAAGCTTTTTTCCA
TCTCTTTTtataaaacaatatttttggagtttttcaccaaaattcaataC
AACATCGCATAATTATTCacctttaatttttgtttttacaaaTCAAAGTT
TTTTGAGACTTTCTTAGAatgttcattttaatttttgaaaatctttttgt
gTATTTCATatccttttgaaattcaaagatAATTCATCGATCCCTTTTAG
ACCAAATTAGGCAGGATCAAGTTGCTATGTCAATATTTATTAAGTCTTTG
AATGAactgttgttttttcattcttcAGATTTTACTGTAGGGAAACAGGG
TTGATGAAGTACAAGATCTATGCAGGAGTTCACGGAAGACCAATGCCGCC
ATCAACCAGAAGACTTGTGGCTTTCACATTTCACCCCTTCTATCCTTTCG
CTATTTCAGTTCAACGGAACAATGCAGATTATGTTTTGAACTTTCATCTA
AGACATTTTACTGGAACTGAGCATGACTCTGTATAGATCAAGGGCACCAT
AAATTTAAAACTCAGAAAATTAAATCTTATcatttaaatttctttcaaaa
taagcACAGTTTTATGTCAACTTTTGGTATTCAAAATTCTTCAATTTCAA
AGGATTTCTGACACATCTAAGTTTAAAAAAGGCTAGTATTTGGTAATAGT
AGTA Coding sequence (CDS) from alignment at sc0000130:411201..414054+ >TCONS_00011545 ID=TCONS_00011545|Name=TCONS_00011545|organism=Clytia hemisphaerica|type=CDS|length=1668bp|location=Sequence derived from alignment at sc0000130:411201..414054+ (Clytia hemisphaerica)
ATGCAAGCTGTTAGACCATTTCGTGATAAGTTTTTTAACAGTTTGAAGCA
TAGGTTACTGACTTACCTTTTTAACCTCTCAGTCAGTGAAGGTACCAGGG
AAGCTGTACGCAGATATTACCAATATTTTGATCAGTTTAAGAATTTGCGT
GTTTGGAAAATGCAGTTGTTAGACGAACTTCATTTACTATTGAGATATGC
AACTGAAGATGTTGTAACCTTAAAGCCGTCTGACCCTAACTCTCTGAACT
CCTTTTATGCAATTTACAACATGGAAACTACCGAAgtgattgctgttttt
gaaaactcTTCAGAAGTGTTTTTAGAAATCTTTGAACAATTCAATGATTA
TTTTCGAAATGCTTTACCATGCCAAGTTGAACAGTTTACTTGCTCAACTT
CAAGCAACATCCATGCCCGCCACAACCAGCGCAGGTTCAAGAGCACCATT
GTTAATGCAAAGTATGGTGGACACAAAGAAGCAGTCAAACGTCTTCTTGC
TCAGCTACCGATCTGTGCTCAATCATTTAGTAGCAGTCCTTATTTGGATC
TTTCACTGTTCAGCTATGACGATAAGTGGGTTTCAGTGATGGAAAGACCC
AAGAATTGCGGCGACCACCCCATAAAATTTTACTGTAGGGAAACAGGGTT
GATGAAGTACAAGATCTATGCAGGAGTTCACGGAAGACCAATGCCGCCAT
CAACCAGAAGACTTGTGGCTTTCACATTTCACCCCTTCTATCCTTTCGCT
ATTTCAGTTCAACGGAACAATGCAGATTATGTTTTGAACTTTCATCTAAG
ACATTTTACTGGAACTGAGCATGACTCTGTATAGATGCAAGCTGTTAGAC
CATTTCGTGATAAGTTTTTTAACAGTTTGAAGCATAGGTTACTGACTTAC
CTTTTTAACCTCTCAGTCAGTGAAGGTACCAGGGAAGCTGTACGCAGATA
TTACCAATATTTTGATCAGTTTAAGAATTTGCGTGTTTGGAAAATGCAGT
TGTTAGACGAACTTCATTTACTATTGAGATATGCAACTGAAGATGTTGTA
ACCTTAAAGCCGTCTGACCCTAACTCTCTGAACTCCTTTTATGCAATTTA
CAACATGGAAACTACCGAAgtgattgctgtttttgaaaactcTTCAGAAG
TGTTTTTAGAAATCTTTGAACAATTCAATGATTATTTTCGAAATGCTTTA
CCATGCCAAGTTGAACAGTTTACTTGCTCAACTTCAAGCAACATCCATGC
CCGCCACAACCAGCGCAGGTTCAAGAGCACCATTGTTAATGCAAAGTATG
GTGGACACAAAGAAGCAGTCAAACGTCTTCTTGCTCAGCTACCGATCTGT
GCTCAATCATTTAGTAGCAGTCCTTATTTGGATCTTTCACTGTTCAGCTA
TGACGATAAGTGGGTTTCAGTGATGGAAAGACCCAAGAATTGCGGCGACC
ACCCCATAAAATTTTACTGTAGGGAAACAGGGTTGATGAAGTACAAGATC
TATGCAGGAGTTCACGGAAGACCAATGCCGCCATCAACCAGAAGACTTGT
GGCTTTCACATTTCACCCCTTCTATCCTTTCGCTATTTCAGTTCAACGGA
ACAATGCAGATTATGTTTTGAACTTTCATCTAAGACATTTTACTGGAACT
GAGCATGACTCTGTATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011545-exon-sc0000130-1491911889:411201..413385 | TCONS_00011545-exon-sc0000130-1491911889:411201..413385 | Clytia hemisphaerica | exon |
| TCONS_00011545-exon-sc0000130-1510915933:411201..413385 | TCONS_00011545-exon-sc0000130-1510915933:411201..413385 | Clytia hemisphaerica | exon |
| TCONS_00011545-exon-sc0000130-1575043694:411201..413385 | TCONS_00011545-exon-sc0000130-1575043694:411201..413385 | Clytia hemisphaerica | exon |
| TCONS_00011545-exon-sc0000130-1491911889:413679..414054 | TCONS_00011545-exon-sc0000130-1491911889:413679..414054 | Clytia hemisphaerica | exon |
| TCONS_00011545-exon-sc0000130-1510915933:413679..414054 | TCONS_00011545-exon-sc0000130-1510915933:413679..414054 | Clytia hemisphaerica | exon |
| TCONS_00011545-exon-sc0000130-1575043694:413679..414054 | TCONS_00011545-exon-sc0000130-1575043694:413679..414054 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000130 | supercontig | sc0000130:411201..414054 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR019138 | De-etiolated_protein_1_Det1 |
Blast
BLAST of TCONS_00011545 vs. Swiss-Prot (Human)
Match: DET1 (DET1 homolog OS=Homo sapiens GN=DET1 PE=1 SV=2) HSP 1 Score: 557.37 bits (1435), Expect = 0.000e+0 Identity = 267/404 (66.09%), Postives = 326/404 (80.69%), Query Frame = 3
Query: 1173 SLFTDDGKYVIVGSASSIPEDSHPLFFDIYQNNESVTPNSRSPLENYSVHIVDLYYGRLQDSRSFKCDKIVLPHNQGIYLYKDTLAVLSVQHQTIHIFKVTSEGYFVDVRKIGRFCYEDDAITVNRL-PEMQ------AVRPFRDKFFNSLKHRLLTYLFNLSVSEGTREAVRRYYQYFDQFKNLRVWKMQLLDELHLLLRYATEDVVTLKPSDPNSLNSFYAIYNMETTEVIAVFENSSEVFLEIFEQFNDYFRNALPCQVEQFTCSTSSNIHARHNQRRFKSTIVNAKYGGHKEAVKRLLAQLPICAQSFSSSPYLDLSLFSYDDKWVSVMERPKNCGDHPIKFYCRETGLMKYKIYAGVHGRPMPPSTRRLVAFTFHPFYPFAISVQRNNADYVLNFHLRH 2363
SLFTDD + VIVGSA+ +P++ HP FF++Y+N+ESVTPN RSPLE+YS+HI+DL+ GRL D+R+FKCDK+VL HNQG+YLYK+ LA+LSVQ QTIH+F+VT EG F+DVR IGRFCYEDD +TV+ + PE+Q PFRD F NSLKHRLL YL+ + +G+ A RR++QYFDQ + LR+WKMQLLDE HL ++Y +EDVVTL+ +DP S SF+ +YNM TTEVIAVFEN+S+ LE+FE F D FRNA QF CS SSN AR QRRFK TI+NAKYGGH EAV+RLL QLPI AQS+S SPYLDLSLFSYDDKWVSVMERPK CGDHPI+FY R++GL+K++I AG+ GRP+ + RRLVAFTFHPF PFAISVQR NA+YV+NFH+RH
Sbjct: 145 SLFTDDCRCVIVGSAAYLPDEPHPPFFEVYRNSESVTPNPRSPLEDYSLHIIDLHTGRLCDTRTFKCDKVVLSHNQGLYLYKNILAILSVQQQTIHVFQVTPEGTFIDVRTIGRFCYEDDLLTVSAVFPEVQRDSQTGMANPFRDPFINSLKHRLLVYLWRRAEQDGSAMAKRRFFQYFDQLRQLRMWKMQLLDENHLFIKYTSEDVVTLRVTDP-SQASFFVVYNMVTTEVIAVFENTSDELLELFENFCDLFRNATLHSEVQFPCSASSNNFARQIQRRFKDTIINAKYGGHTEAVRRLLGQLPISAQSYSGSPYLDLSLFSYDDKWVSVMERPKTCGDHPIRFYARDSGLLKFEIQAGLLGRPINHTVRRLVAFTFHPFEPFAISVQRTNAEYVVNFHMRH 547 HSP 2 Score: 195.282 bits (495), Expect = 3.164e-53 Identity = 97/175 (55.43%), Postives = 121/175 (69.14%), Query Frame = 1
Query: 541 KRRSAANHNIIKKLMHRQIISPKPNTHCQQARSFCLNVFPNFTVVDVEKPPCFLRKFSPDGRHFVAFSRDQSSIEIYEFKGPSAVEHLLHK-----ACQGNREEITNLKTNMFENFFRKKAVVTVTQFGEHLNRECSLFTDDGKYVIVGSASSIPEDSHPLFFDIYQNNESVTPN 1050
K R N N+I +L R+I S K TH Q R F NVFPNFTVV+VEKPPCFLRKFSPDGR+F+AFS DQ+S+EIYE++G A E LL GN + N++ +FE FF + V GEHLNRECSLFTDD + VIVGSA+ +P++ HP FF++Y+N+ESVTPN
Sbjct: 9 KPRRIQNQNVIHRLERRRISSGKAGTHWHQVRVFHQNVFPNFTVVNVEKPPCFLRKFSPDGRYFIAFSSDQTSLEIYEYQGCQAAEDLLQGYEGEILSNGNDQRSVNIRGRLFERFFVLLHITNVAANGEHLNRECSLFTDDCRCVIVGSAAYLPDEPHPPFFEVYRNSESVTPN 183
The following BLAST results are available for this feature:
|
