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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011544 ID=TCONS_00011544|Name=TCONS_00011544|organism=Clytia hemisphaerica|type=transcript|length=1825bp
CAAAACAAAGGAGGACACCAAACTCGTTCCCGTGCTTCCAATAAATGACG
TAATGGTAATGACGTCATGTTAGTAATAAGCGTGCGGGCATAGGTCACTA
TCGCTTTCTTAAGAAACAATAAATCAAACAACGTATCGAATTGACAGAGA
CTGGGCTCAAGTTGTCAAATCCCCCTCCTCTTCTTTTGCGGACCCTGCAC
CTCTATAAAAGAGCGTGGCATCCCTCCAACCAATCAACTATCATCACAAA
GGAGAAGAAGAGAAGCCAACAAAAGTTATCCACAACTAGAAGCGACAAGA
TGGATTTGAAGATATTCCTTTTCGTGGCATTTTTCGTCGTGTTTACAGAA
AAATGTGAGGGATGCAAGATCCCCATTCTCAGCTCAGACCACAGCTCAGG
GAAGAACTACATCGGCCAATATTTCAACTTCGATCGCAAACGCATAAGAG
GTCTCCACGAAGGAGGTTCCAAAAAGTTCAGAGCGTACAATCTTCGCTCA
GGGTTGATTGGTCGCGTCATTGTGTGGGGAAGTAAAAATGGAGGAAGCAA
AGGAGATGCCCATGGAAGGTTCGATAATCGGAAAGTCGCGCCCAAACCTG
GACAATGGCAACCTGGAGATTACCTCGTCCCCATGGATTGTTCAATCTGT
GCTAAAgTTTCGAACACCACTTGTGAGATCAAAGTATTGGGCATCGCACA
TGGAACTTCGTCATACAGCGATGGTCGGTACTTCAACTTCAACCGAGCCA
AAGTGAATGGACTTGGTGTAAATGGAGGGATGCAATTCGTTGCTTATAAC
CCACGTACTTCCGTCATTGGAAGAGTTTACGTTTGGGGGCGAGCAAGTGG
TGGCGGAATCGGGGACGCCCACGGGCAATTTCATTACAAAAACGTTCAAC
CGAGAGCCAATCAATGGAAAACGGGGGATGTTGTGATCCCCATAGACCAA
TCCATCTGCGTTCAACAGTGTCCACTGGATGTGTAATCTCAAGTGAACGA
GCGTGGATCAAAAGAAGCAACTATTTCTATTTTCTCAGTTTTTTATTCTT
GTATGAGTGCTTAGTTCCGTTTTGTCTTTGGAATTAGAAAAtattattca
agaaaaaaatctctTCCACTCATTTTGTTTGCGAGCATCTTTCATTCTGA
CTGCAAAAAAAATGATACAATTTCGGAAGAAATTGCTTGAAATACCTTTA
AATAACGACAACTAAGCCAGGTAAAACTTTTCTCCGGAGAAAAATTGACG
TCGGTTTTCTCTGGAGAAAACTTGGTAACTtgggcaaaaataaaaaaatg
tagtgtttccggaaaccggccgggtgaaaaaaataaattttctgacccgg
ccgcagatcAAGTTTTGTCCGTTAGTATTTGATACATTAGTACTCAGAGC
TTACTTcttactgtttgtacataaaaaatctatctttaaagTTCAATTTC
attgatcttaagttatcaaaaatagcacaaaaaaattcttttccagccgg
ccgcatgagagcttttttccttcacccgcattccggaaacattacatttt
tttattttcgccttgcCTAAATATTTCCTCACTTTCCTTGACTAATTTTT
CCCTAAGTTTTAAAGTAGAGGCTGACCTGGAAAGAATACGATTTTGTATT
GTTTGAAGTCCACATCGCTGGCAACTTGTGTATTCTCAATCAATGCTAGT
GCTTCTTGATCCGCTAAAAGTTTCTTGCAACTTTGGTCATCTCCAAACAT
ATCACCGCTGCCTGCGTCCTAAAAGAAATTATCAAATTATCCTAACAACA
GGAAGAAATGTTTCATCTTGTTTTG Run BLAST on NCBI protein sequence of TCONS_00011544-protein >TCONS_00011544-protein ID=TCONS_00011544-protein|Name=TCONS_00011544-protein|organism=Clytia hemisphaerica|type=polypeptide|length=228bp
MDLKIFLFVAFFVVFTEKCEGCKIPILSSDHSSGKNYIGQYFNFDRKRIR
GLHEGGSKKFRAYNLRSGLIGRVIVWGSKNGGSKGDAHGRFDNRKVAPKP
GQWQPGDYLVPMDCSICAKVSNTTCEIKVLGIAHGTSSYSDGRYFNFNRA
KVNGLGVNGGMQFVAYNPRTSVIGRVYVWGRASGGGIGDAHGQFHYKNVQ
PRANQWKTGDVVIPIDQSICVQQCPLDV Run BLAST on NCBI transcript from alignment at sc0000130:335182..340125+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011544 ID=TCONS_00011544|Name=TCONS_00011544|organism=Clytia hemisphaerica|type=transcript|length=4944bp|location=Sequence derived from alignment at sc0000130:335182..340125+ (Clytia hemisphaerica)
CAAAACAAAGGAGGACACCAAACTCGTTCCCGTGCTTCCAATAAATGACG
TAATGGTAATGACGTCATGTTAGTAATAAGCGTGCGGGCATAGGTCACTA
TCGCTTTCTTAAGAAACAATAAATCAAACAACGTATCGAATTGACAGAGA
CTGGGCTCAAGTTGTCAAATCCCCCTCCTCTTCTTTTGCGGACCCTGCAC
CTCTATAAAAGAGCGTGGCATCCCTCCAACCAATCAACTATCATCACAAA
GGAGAAGAAGAGAAGCCAACAAAAGTTATCCACAACTAGAAGCGACAAGA
TGGATTTGAAGATATTCCTTTTCGTGGCATTTTTCGTCGTGTTTACAGGT
TAGTAATATTGAATAGGTTAGTCCtcttaatttcaatttctttttagcaT
CTACACTACATCGAATCTGTCATTTGTCAATTCAAACAGTTCGACTCGAG
TTAAAGAATACTGCCTGCATCGTTGTATTGAGCACACGTCTTTATATTGA
GCACATGTCTTTGCTCCAAGTACTCTCCAAACtcctttttcgtttttctt
tataGATTATTTTACCTATAGTTTGCCATTCTTTACACTCTtattctttt
cacttttttctgttCCCTCTTCCTGACGGTATAACCTAGAGGTTCTTTGC
AGGAGGTTCTTTGCGGGAGGTAAGGAGCCTTTGGTGTTAGACTATTCGTT
TGTGTCAcctaatgggcttttccagaaaagaattttacccccactgttga
ggatattgatttttcaaagtatcGAACCcactggatatcctactttatta
gtaaaaaGGATATCGTattcctactttattagtaaggaggatatcgtatt
ttttacttgaaaagacactttacaaCCTGGATATCTGCTTCCGTAGATAT
TTAAcctcctggatatccacttttgaacaaaaatcgttaaccccctggat
atccgatatcctcaacagggggggggccGAATCAAAGATAGAAAACAGAA
GAATCAAGACAGGAAAATAGTTATTGTCTCTCATCCACAAAACATTCTTA
ATTCATAGAAAAATGTGAGGGATGCAAGATCCCCATTCTCAGCTCAGACC
ACAGCTCAGGGAAGAACTACATCGGCCAATATTTCAACTTCGATCGCAAA
CGCATAAGAGGTCTCCACGAAGGAGGTTCCAAAAAGTTCAGAGCGTACAA
TCTTCGCTCAGGGTTGATTGGTCGCGTCATTGTGTGGGGAAGTAAAAATG
GAGGAAGCAAAGGAGATGCCCATGGAAGGTTCGATAATCGGAAAGTCGCG
CCCAAACCTGGACAATGGCAACCTGGAGATTACCTCGTCCCCATGGATTG
TTCAATCTGTGCTAAAggtattttcgttattttcaccATTCAGAGACTCG
TACTATTGACATTACTATGAATTGTGTGATGTAAATATTATCTAATGATG
CTGGTATGATACCCCACACTCTTTTCAACCtgaagaaatttagaaatagt
TTGGGAGGCCATACAATACCGTTGCAAACACTTTAGTCAGTAAATTCATT
CAACCTATAGAATATAGaaaacaagaaagcctaagcggcGTAAAGGCCCA
GCAGTGTTGGCACTTTCAGCAAAGTTTTCCGCTGCAGAATCGGCATACAA
CAGGAgcgaattttttcaatgtatagaCTCGAGTCGGGCGAGCAATAAag
atttaattactttaaacttttttctactaagaaagaaagatttgaccatA
TAAGTTGGAGGTAATAATTATATGTGGTTTTTTCCTACGCATGCGCACAT
TAGAAAGTCGGGTAGCTCGATTTTAGCCTGGGATCATCAATTAATAATAG
GcataggccccgacaaagtcaaattttttcgaCCAGTTGTGTTTTAAAGG
CCNATGTTttttttcttacgcatgcgcACATTAGAAAGTCAGGTAGCTCG
ATTTTAGCCTGGGATCGTCAATTGGTAATTGCGCGcataggccccgacaa
agtcaaATTCTTTCGACCAGTTTTGTTTTAAAGGCCAATTGCGCTgcgcg
ctgggccaataatCTTCGTTCAAAGAACTTTTTCATTAAATCTTTGTGTT
TCAGTTTCGAACACCACTTGTGAGATCAAAGTATTGGGCATCGCACATGG
AACTTCGTCATACAGCGATGGTCGGTACTTCAACTTCAACCGAGCCAAAG
TGAATGGACTTGGTGTAAATGGAGGGATGCAATTCGTTGCTTATAACCCA
CGTACTTCCGTCATTGGTAAGGCCCTTAGATATAGCTACTCTGGATTTCC
AAAGCAACTGCAGGTGAAGCAAAACAAAaagccatctttgctgaaagtag
gtcacagttcggcgccggcaatttgttcaaccaAGCAAAAAAACTGAATA
GCGCGAAGCGACGAGGCGAAAGATAGGCTTGATCGATCAAATTGCCGGAA
CCGAACTATGGTCTACCTATTAAAGATGGCGGAAtattttgattcaaata
gggacggagtagctccactgacttttatatattcctggaccaagctatat
ccgccatctttgatcgaagttttttttgaaagttggtacccAAAAAGCCA
Ttgcagggggggggtcggtagtaaaatctcagacataatgaggtttacta
cggtggtggtgtgacgaaaaatcgaaaaaaaaatttactacccaGGGAAT
TTAaatactaaaaagggtggtatctatgtgttaaatgttgaaaaaagttN
TAGATAaatactaaaaagggtggtatctatgtgttaaatgttgaaaaaag
tttagtacctgggtagttaaaactggtaaaattagcaaaatacttgtttt
aattttcttggatgatttttctgaaaaaatctgaaaacttttataatttg
aaaaaaaattctgttggaaagttgtttgctgcaaacaaaaaattctccaa
attttttgtcaatataaaaaagactaatTCTAAgagcaaaacattaattt
ttgcactaagtgaaaaatgtgtcacagaaataatcatggtggtatgtaaa
aattcgtaaaaatccttttactacaaatatatgtctgagattttactatc
gccccccccccccctggccaTTGTAGTGTTCgaaactttgcctaacgaca
aacggcgctacatcattagtatacacaatttcaaaaaaaactccgatcat
aatatttttcttggacggcattgagtaacttggtccagggatatataaag
gtcagtgagtagctctatctagtgttttatataagatatctgtggaaaGA
CCATACGAGAATCACCCGTCAAAACAGATTGTTGTTAAAACAAGCATAGA
TTTTTTCTCCCATTCTTCATGCCTTTATTACCTAACCCATTTTCTAAGTC
CTAATCATTTAAATGTTTTAAGTAATGGACAAAAGTAATGGACAAATTGG
TAGGAGCATTATCTCTATATACAATAagaatttcatattttgtgTCTATC
ACGCTAGAAAATGATAGACCAGCTGCGATTTCGAATGGTTTGTCAGGGAG
CTGATTTGAGTATGAAAGAAATATTCCGTGCAATCTTGAAaccaaaatct
cattttctttcgaaaaagcAGTTTATAATTAGTCGTGGTTTTAATtatat
gtttaaaaaatttatctttaatcAATAAAATTGAGAGAGAAAATTAGCAC
CATCTCCCGATAAAACCCCCGTCCGAAAAGAGATTTGATGTTCGACTTGA
AGAAGCCCTTAAGGTAGAATTAGAGACTATCAACTATGCtaaaggctttt
gatgcgcaagctaaaccggcgtttACGATGACGGAAACCGTCTAGNAGGC
TTTTGATGCGCAAGTTAAACCGGCGTTTACGATGACGGAAACCGTCTAGT
GTTatctattaaaattatttttgtaaaatctatcACAGGAAGAGTTTACG
TTTGGGGGCGAGCAAGTGGTGGCGGAATCGGGGACGCCCACGGGCAATTT
CATTACAAAAACGTTCAACCGAGAGCCAATCAATGGAAAACGGGGGATGT
TGTGATCCCCATAGACCAATCCATCTGCGTTCAACAGTGTCCACTGGATG
TGTAATCTCAAGTGAACGAGCGTGGATCAAAAGAAGCAACTATTTCTATT
TTCTCAGTTTTTTATTCTTGTATGAGTGCTTAGTTCCGTTTTGTCTTTGG
AATTAGAAAAtattattcaagaaaaaaatctctTCCACTCATTTTGTTTG
CGAGCATCTTTCATTCTGACTGCAAAAAAAATGATACAATTTCGGAAGAA
ATTGCTTGAAATACCTTTAAATAACGACAACTAAGCCAGGTAAAACTTTT
CTCCGGAGAAAAATTGACGTCGGTTTTCTCTGGAGAAAACTTGGTAACTt
gggcaaaaataaaaaaatgtagtgtttccggaaaccggccgggtgaaaaa
aataaattttctgacccggccgcagatcAAGTTTTGTCCGTTAGTATTTG
ATACATTAGTACTCAGAGCTTACTTcttactgtttgtacataaaaaatct
atctttaaagTTCAATTTCattgatcttaagttatcaaaaatagcacaaa
aaaattcttttccagccggccgcatgagagcttttttccttcacccgcat
tccggaaacattacatttttttattttcgccttgcCTAAATATTTCCTCA
CTTTCCTTGACTAATTTTTCCCTAAGTTTTAAAGTAGAGGCTGACCTGGA
AAGAATACGATTTTGTATTGTTTGAAGTCCACATCGCTGGCAACTTGTGT
ATTCTCAATCAATGCTAGTGCTTCTTGATCCGCTAAAAGTTTCTTGCAAC
TTTGGTCATCTCCAAACATATCACCGCTGCCTGCGTCCTAAAAGAAATTA
TCAAATTATCCTAACAACAGGAAGAAATGTTTCATCTTGTTTTG Coding sequence (CDS) from alignment at sc0000130:335182..340125+ >TCONS_00011544 ID=TCONS_00011544|Name=TCONS_00011544|organism=Clytia hemisphaerica|type=CDS|length=2748bp|location=Sequence derived from alignment at sc0000130:335182..340125+ (Clytia hemisphaerica)
ATGGATTTGAAGATATTCCTTTTCGTGGCATTTTTCGTCGTGTTTACAGA
AAAATGTGAGGGATGCAAGATCCCCATTCTCAGCTCAGACCACAGCTCAG
GGAAGAACTACATCGGCCAATATTTCAACTTCGATCGCAAACGCATAAGA
GGTCTCCACGAAGGAGGTTCCAAAAAGTTCAGAGCGTACAATCTTCGCTC
AGGGTTGATTGGTCGCGTCATTGTGTGGGGAAGTAAAAATGGAGGAAGCA
AAGGAGATGCCCATGGAAGGTTCGATAATCGGAAAGTCGCGCCCAAACCT
GGACAATGGCAACCTGGAGATTACCTCGTCCCCATGGATTGTTCAATCTG
TGCTAAAgTTTCGAACACCACTTGTGAGATCAAAGTATTGGGCATCGCAC
ATGGAACTTCGTCATACAGCGATGGTCGGTACTTCAACTTCAACCGAGCC
AAAGTGAATGGACTTGGTGTAAATGGAGGGATGCAATTCGTTGCTTATAA
CCCACGTACTTCCGTCATTGGAAGAGTTTACGTTTGGGGGCGAGCAAGTG
GTGGCGGAATCGGGGACGCCCACGGGCAATTTCATTACAAAAACGTTCAA
CCGAGAGCCAATCAATGGAAAACGGGGGATGTTGTGATCCCCATAGACCA
ATCCATCTGCGTTCAACAGTGTCCACTGGATGTGTAAATGGATTTGAAGA
TATTCCTTTTCGTGGCATTTTTCGTCGTGTTTACAGAAAAATGTGAGGGA
TGCAAGATCCCCATTCTCAGCTCAGACCACAGCTCAGGGAAGAACTACAT
CGGCCAATATTTCAACTTCGATCGCAAACGCATAAGAGGTCTCCACGAAG
GAGGTTCCAAAAAGTTCAGAGCGTACAATCTTCGCTCAGGGTTGATTGGT
CGCGTCATTGTGTGGGGAAGTAAAAATGGAGGAAGCAAAGGAGATGCCCA
TGGAAGGTTCGATAATCGGAAAGTCGCGCCCAAACCTGGACAATGGCAAC
CTGGAGATTACCTCGTCCCCATGGATTGTTCAATCTGTGCTAAAgTTTCG
AACACCACTTGTGAGATCAAAGTATTGGGCATCGCACATGGAACTTCGTC
ATACAGCGATGGTCGGTACTTCAACTTCAACCGAGCCAAAGTGAATGGAC
TTGGTGTAAATGGAGGGATGCAATTCGTTGCTTATAACCCACGTACTTCC
GTCATTGGAAGAGTTTACGTTTGGGGGCGAGCAAGTGGTGGCGGAATCGG
GGACGCCCACGGGCAATTTCATTACAAAAACGTTCAACCGAGAGCCAATC
AATGGAAAACGGGGGATGTTGTGATCCCCATAGACCAATCCATCTGCGTT
CAACAGTGTCCACTGGATGTGTAAATGGATTTGAAGATATTCCTTTTCGT
GGCATTTTTCGTCGTGTTTACAGAAAAATGTGAGGGATGCAAGATCCCCA
TTCTCAGCTCAGACCACAGCTCAGGGAAGAACTACATCGGCCAATATTTC
AACTTCGATCGCAAACGCATAAGAGGTCTCCACGAAGGAGGTTCCAAAAA
GTTCAGAGCGTACAATCTTCGCTCAGGGTTGATTGGTCGCGTCATTGTGT
GGGGAAGTAAAAATGGAGGAAGCAAAGGAGATGCCCATGGAAGGTTCGAT
AATCGGAAAGTCGCGCCCAAACCTGGACAATGGCAACCTGGAGATTACCT
CGTCCCCATGGATTGTTCAATCTGTGCTAAAgTTTCGAACACCACTTGTG
AGATCAAAGTATTGGGCATCGCACATGGAACTTCGTCATACAGCGATGGT
CGGTACTTCAACTTCAACCGAGCCAAAGTGAATGGACTTGGTGTAAATGG
AGGGATGCAATTCGTTGCTTATAACCCACGTACTTCCGTCATTGGAAGAG
TTTACGTTTGGGGGCGAGCAAGTGGTGGCGGAATCGGGGACGCCCACGGG
CAATTTCATTACAAAAACGTTCAACCGAGAGCCAATCAATGGAAAACGGG
GGATGTTGTGATCCCCATAGACCAATCCATCTGCGTTCAACAGTGTCCAC
TGGATGTGTAAATGGATTTGAAGATATTCCTTTTCGTGGCATTTTTCGTC
GTGTTTACAGAAAAATGTGAGGGATGCAAGATCCCCATTCTCAGCTCAGA
CCACAGCTCAGGGAAGAACTACATCGGCCAATATTTCAACTTCGATCGCA
AACGCATAAGAGGTCTCCACGAAGGAGGTTCCAAAAAGTTCAGAGCGTAC
AATCTTCGCTCAGGGTTGATTGGTCGCGTCATTGTGTGGGGAAGTAAAAA
TGGAGGAAGCAAAGGAGATGCCCATGGAAGGTTCGATAATCGGAAAGTCG
CGCCCAAACCTGGACAATGGCAACCTGGAGATTACCTCGTCCCCATGGAT
TGTTCAATCTGTGCTAAAgTTTCGAACACCACTTGTGAGATCAAAGTATT
GGGCATCGCACATGGAACTTCGTCATACAGCGATGGTCGGTACTTCAACT
TCAACCGAGCCAAAGTGAATGGACTTGGTGTAAATGGAGGGATGCAATTC
GTTGCTTATAACCCACGTACTTCCGTCATTGGAAGAGTTTACGTTTGGGG
GCGAGCAAGTGGTGGCGGAATCGGGGACGCCCACGGGCAATTTCATTACA
AAAACGTTCAACCGAGAGCCAATCAATGGAAAACGGGGGATGTTGTGATC
CCCATAGACCAATCCATCTGCGTTCAACAGTGTCCACTGGATGTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011544-exon-sc0000130-1491911889:335182..335529 | TCONS_00011544-exon-sc0000130-1491911889:335182..335529 | Clytia hemisphaerica | exon |
| TCONS_00011544-exon-sc0000130-1510915933:335182..335529 | TCONS_00011544-exon-sc0000130-1510915933:335182..335529 | Clytia hemisphaerica | exon |
| TCONS_00011544-exon-sc0000130-1575043694:335182..335529 | TCONS_00011544-exon-sc0000130-1575043694:335182..335529 | Clytia hemisphaerica | exon |
| TCONS_00011544-exon-sc0000130-1491911889:336240..336548 | TCONS_00011544-exon-sc0000130-1491911889:336240..336548 | Clytia hemisphaerica | exon |
| TCONS_00011544-exon-sc0000130-1510915933:336240..336548 | TCONS_00011544-exon-sc0000130-1510915933:336240..336548 | Clytia hemisphaerica | exon |
| TCONS_00011544-exon-sc0000130-1575043694:336240..336548 | TCONS_00011544-exon-sc0000130-1575043694:336240..336548 | Clytia hemisphaerica | exon |
| TCONS_00011544-exon-sc0000130-1491911889:337286..337447 | TCONS_00011544-exon-sc0000130-1491911889:337286..337447 | Clytia hemisphaerica | exon |
| TCONS_00011544-exon-sc0000130-1510915933:337286..337447 | TCONS_00011544-exon-sc0000130-1510915933:337286..337447 | Clytia hemisphaerica | exon |
| TCONS_00011544-exon-sc0000130-1575043694:337286..337447 | TCONS_00011544-exon-sc0000130-1575043694:337286..337447 | Clytia hemisphaerica | exon |
| TCONS_00011544-exon-sc0000130-1491911889:339120..340125 | TCONS_00011544-exon-sc0000130-1491911889:339120..340125 | Clytia hemisphaerica | exon |
| TCONS_00011544-exon-sc0000130-1510915933:339120..340125 | TCONS_00011544-exon-sc0000130-1510915933:339120..340125 | Clytia hemisphaerica | exon |
| TCONS_00011544-exon-sc0000130-1575043694:339120..340125 | TCONS_00011544-exon-sc0000130-1575043694:339120..340125 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000130 | supercontig | sc0000130:335182..340125 + |
Blast
The following BLAST results are available for this feature:
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