|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011539 ID=TCONS_00011539|Name=TCONS_00011539|organism=Clytia hemisphaerica|type=transcript|length=3035bpRun BLAST on NCBI protein sequence of TCONS_00011539-protein >TCONS_00011539-protein ID=TCONS_00011539-protein|Name=TCONS_00011539-protein|organism=Clytia hemisphaerica|type=polypeptide|length=694bp MMADLDLLGNSKSPLKSPGKTLPKIPKKVKEEPQSPVKSPTKSPTTNGHSRun BLAST on NCBI transcript from alignment at sc0000130:222790..231329+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011539 ID=TCONS_00011539|Name=TCONS_00011539|organism=Clytia hemisphaerica|type=transcript|length=8540bp|location=Sequence derived from alignment at sc0000130:222790..231329+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000130:222790..231329+ >TCONS_00011539 ID=TCONS_00011539|Name=TCONS_00011539|organism=Clytia hemisphaerica|type=CDS|length=31275bp|location=Sequence derived from alignment at sc0000130:222790..231329+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00011539 vs. Swiss-Prot (Human)
Match: TOP1 (DNA topoisomerase 1 OS=Homo sapiens GN=TOP1 PE=1 SV=2) HSP 1 Score: 742.651 bits (1916), Expect = 0.000e+0 Identity = 381/556 (68.53%), Postives = 448/556 (80.58%), Query Frame = 1
Query: 835 HPEGIKWKTLEHNGPYFPPAYERLPKNVKFYYDGELMELSEGAEEVATFYSKMLEHDYTKKDIFNNNFFEDWRKEMTDQERKKIKKLEKCNFQEMCDYFKEQSEIRXXXXXXXXXXXXXXXXXXXXQYGMCIMDGHKQKVGNFRIEPPGLFRGRGDHPKQGKLKKRVKAKEVSINIGKAAPVPQPPEGQKWKAVQHDASVTWLACWTENITGSNKYVMLNAATRIKGEKDWQKYETARKLKGCVHKIRENYKADWKSKEMRIRQRAVAMYFIDKLALRAGHEKEEGESADTVGCCSLRVEHIKLYSEKDGEEYVVEFDFLGKDSIRYTNSVPVEKRVYKNLELFKQNKQPGDDLFDRLNTGSLNKFLGEQMPGLTAKVFRTYNASNTLQQQLDTLTEPDANVTAKFLQYNRANRAVAILCNHQRAPPKTFDKQMENLITXXXXXXXXXXXXXXXXXXXXXXYHNQGXXXXXXXXXXXXXXQAERLEEQYFKLEVNMTDKEENKEIALGTSKLNYLDPRISIAWCKKNDVPIEKIYNKTQREKFQWAIDMTDETFVF 2502
+PEGIKWK LEH GP F P YE LP+NVKFYYDG++M+LS AEEVATF++KML+H+YT K+IF NFF+DWRKEMT++E+ I L KC+F +M YFK Q+E RK +KEEKL +KEEN + ++YG CIMD HK+++ NF+IEPPGLFRGRG+HPK G LK+R+ +++ IN K A VP PP G KWK V+HD VTWL WTENI GS KY+MLN ++RIKGEKDWQKYETAR+LK CV KIR Y+ DWKSKEM++RQRAVA+YFIDKLALRAG+EKEEGE+ADTVGCCSLRVEHI L+ E DG+EYVVEFDFLGKDSIRY N VPVEKRV+KNL+LF +NKQP DDLFDRLNTG LNK L + M GLTAKVFRTYNAS TLQQQL LT PD N+ AK L YNRANRAVAILCNHQRAPPKTF+K M NL TK+ KK+Q+ ++++K K + K K K ++E KKK +RLEEQ KLEV TD+EENK+IALGTSKLNYLDPRI++AWCKK VPIEKIYNKTQREKF WAIDM DE + F
Sbjct: 211 YPEGIKWKFLEHKGPVFAPPYEPLPENVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNEEKNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEENEKLLKEYGFCIMDNHKERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPPGHKWKEVRHDNKVTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQTKIDAKKEQLADARRDLKSAKADA-KVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCKKWGVPIEKIYNKTQREKFAWAIDMADEDYEF 765 The following BLAST results are available for this feature:
BLAST of TCONS_00011539 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.