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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011537 ID=TCONS_00011537|Name=TCONS_00011537|organism=Clytia hemisphaerica|type=transcript|length=3201bpRun BLAST on NCBI protein sequence of TCONS_00011537-protein >TCONS_00011537-protein ID=TCONS_00011537-protein|Name=TCONS_00011537-protein|organism=Clytia hemisphaerica|type=polypeptide|length=951bp MTKQHSDSKKRHSPTIGHSKSKHMAKEPLHKDVEQGRESPVIPPPSAVEERun BLAST on NCBI transcript from alignment at sc0000130:185452..213387+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011537 ID=TCONS_00011537|Name=TCONS_00011537|organism=Clytia hemisphaerica|type=transcript|length=27936bp|location=Sequence derived from alignment at sc0000130:185452..213387+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000130:185452..213387+ >TCONS_00011537 ID=TCONS_00011537|Name=TCONS_00011537|organism=Clytia hemisphaerica|type=CDS|length=37128bp|location=Sequence derived from alignment at sc0000130:185452..213387+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00011537 vs. Swiss-Prot (Human)
Match: R10B1 (Radial spoke head 10 homolog B OS=Homo sapiens GN=RSPH10B PE=2 SV=1) HSP 1 Score: 399.823 bits (1026), Expect = 2.005e-122 Identity = 222/619 (35.86%), Postives = 346/619 (55.90%), Query Frame = 1
Query: 271 EPILQPLIVAKYTGEIDENGFYHGQGFAIMKGGLTYKGVFEHGKMHGEGTLTWPNGTIFTGDFVCNEIKGKGVYKWTDGSCYEGETLKGLRHGQGIFKCADGAKSYKGQWVEGKRNGKGILYYDAMGTSYYDGQWKDNQKEGNGTRRYRNGNTYQGQWKNNIREGMGTMRWYDLGQEYTGVWLNGLQCGHGENTWYLKRVKSTQYPLRNYYVGDFLNGERHGYGVFHYASGAKYEGEWMSNLKHGHGKFTFKNGCEFSGVFSDDRIQDFPD--------LILSGMATPDIARSGIPIHSPGVIRAQSIMGIPTQATDVFLDVD-IGDMLMDYGYDLEQRQTEVNNILCLLLRHASHLKQLYKIYSCIGEYMPIDKTSIMSKLQYLRFLKDYGIHRLGCSVIELEKLTGEQ----INDAGYYCKKIFFRDFLHSTIRISDILYKDQLDEDCNTLSNCFRAFLNNLLVPPETVEVKGSVFVSVEKCQEVMGHLDFFMKMYEHYRHIYVTNGNHKHPYKELYSLKQRHLLFIFHELGLLSKDLTTTKLVEIVSQEDR------DEEGYFNLELQISPLEFVEVIVSVATCFVTTKLLHQHQQPKGEEHKHVVEGREKEKITT 2070
E IL LIV Y GE G Y G+GFA +GG TY+G+F G MHG+GT W +G + GDFV N GVY W DGS YEGE + G+R+G G+FKC+ SY G W GKR+GKG +YY+ GT +Y+G W N K+G G R Y++GN Y+GQW++N+R G G MRW +EYTG W G+Q G G +TW+LKR++S+QYPLRN Y+G+F+NG RHG G F+YASGA Y+GEW+SN KHG G+ TFKNG + G FS+D I FPD L LS P ++RS I + S++G + + LD++ + DM + E++Q E +LR+ + L+++Y YS +G +D T +M+KL + RFLKD H ++ +++++ + + I R FL+ + ++ +Y ++ + +L CF + + P ++KG++F ++ M +++ ++Y Y + P++ ++K RH L++ + +++K+LT +E++++++R D N E ++ LEF E ++S A VT ++ + ++ V G + E I T
Sbjct: 75 ESILTKLIVESYEGE-KVRGLYEGEGFAAFQGGCTYRGMFSEGLMHGQGTYIWADGLKYEGDFVKNVPMNHGVYTWPDGSMYEGEVVNGMRNGFGMFKCSTQPVSYIGHWCNGKRHGKGSIYYNQEGTCWYEGDWVQNIKKGWGIRCYKSGNIYEGQWEDNMRHGEGRMRWLTTNEEYTGRWERGIQNGFGTHTWFLKRIRSSQYPLRNEYIGEFVNGYRHGRGKFYYASGAMYDGEWVSNKKHGMGRLTFKNGRVYEGAFSNDHIAGFPDLEVEFISCLDLSSGVAPRLSRSAELIRKLDGSESHSVLG-----SSIELDLNLLLDMYPETVQPEEKKQVEY-----AVLRNITELRRIYSFYSSLGCGHSLDNTFLMTKLHFWRFLKDCKFHHHKLTLADMDRILSANNDIPVEEIHSPFTTILLRTFLNYLLHLAYHIYHEEFQKRSPSLFLCFTKLMTE-NIRPNAFQIKGNLFREQQRTLYSMSYMNKCWEIYLAY-----CRPSAAPPHEP--TMKMRHFLWMLKDFKMINKELTAATFMEVIAEDNRFIYDGIDS----NFEPELVFLEFFEALLSFAFICVTDQMTKSYTNVPADD----VSGNKHETIYT 666 The following BLAST results are available for this feature:
BLAST of TCONS_00011537 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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