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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011531 ID=TCONS_00011531|Name=TCONS_00011531|organism=Clytia hemisphaerica|type=transcript|length=1387bp
agtgTGTCATTACTTATTTTTAGGGAAATATAGGGCATGACCAATGTCGG
ACATTTTCAacattgatgaaaaatgatcaaagaaaattcttcaaTAACAA
CCACCATTGCGTCAACCTTAATGACGCCGTCGCCACGGGACGGATACGAC
CTCCCGTTGTACGGTATCGAAAACACAACTAGTTTCTACATGGTACACAT
ACCAGCATTGACTTGCATCAGCTTAAGTTTATCAACTGTggttattgttt
tgtttttatcgtGTCGTGGATATAAGGATAAGAAAAGGACTAAACGTACT
TCGTTTTACAACTGGAACAAGGGGGAACGTTTTGTCATTTATTTATGTAT
ATGTGATGGTTTGTTCAATTCATTCCATTTGATTGATCATGTTTACATTA
TGGTGATCCGCAAACATGTGACGCCACCTGAATTGTGCAGGTTTTATGGC
TTCATGCTGGTCGAATTCATTGGTGCACAAATCTTCATGGTCAACTTGAT
CGCAATAAATGCGTTTTTATTGATCTACTTTCGCAAGAACATTGACTTTG
GTAAATATGACCACAGATTGGTGATATGGACTTTCGGAATGCCTTGCATT
GGAGGTATCACATGTCTAGCGTTAAATGCTCTCGGTCCAAATGGCATATT
CTGTTTCTTCGACGGTGTTAAAGGAGTTATCCCGAACCTGGTCATCTGTT
CAGCTTTCCTGTCCACAATCTTATTCATAAACATCACGCTATACGGTCTT
ACATATCACCGCATACGAAAAGAAGAATTCAGCTTCAAGCGAGATGAAAA
TAACGAGATGCTCAAAGCCTCACATCGCGCGGCCCGTTCGATGTCTTTGT
TTGTGGCAGCCTTCATGACACAATGGTGGGCAATGGCTCTGTACGGAATC
TGGCAGCTAACTGTCAAAGAAGTGCCTTTATTTGTTTTTCAGCTTGGAAC
AACTTTTTCTAACTTGGGAGGAGTTTTTAATGGAGTAGTGTATTTCTTTT
TGAGAAGGCAACGAATTAAAGACAGTAAACGAGACCAGGAGTACGACCCT
AATGTTTTCACACCGGACTTGAGAACAAACAATCGAAAAGCATTCAATTA
TGAACTAGTAAATAATTCAGACAAGTCAAATACTAATTGAAGTTGAGATT
AAGTATTCGGGCGGTATTTGATCAAATATTCAAATAGTGGAATTATGCAA
TTATGTAATTATGAATTCAAATACAGAAGCTAATAAATAAACGAATCAAC
AAGCTATTTACCTTTTTCTAAATAATTCGAGAGGATGCCATGCGATAAAC
AGGGTCCCAgcaatgttaaattgattcatCCATTTGTTGTTTCTTTACCA
GTATCACCATgttgaatttttatttcttataatttcg Run BLAST on NCBI protein sequence of TCONS_00011531-protein >TCONS_00011531-protein ID=TCONS_00011531-protein|Name=TCONS_00011531-protein|organism=Clytia hemisphaerica|type=polypeptide|length=355bp
MIKENSSITTTIASTLMTPSPRDGYDLPLYGIENTTSFYMVHIPALTCIS
LSLSTVVIVLFLSCRGYKDKKRTKRTSFYNWNKGERFVIYLCICDGLFNS
FHLIDHVYIMVIRKHVTPPELCRFYGFMLVEFIGAQIFMVNLIAINAFLL
IYFRKNIDFGKYDHRLVIWTFGMPCIGGITCLALNALGPNGIFCFFDGVK
GVIPNLVICSAFLSTILFINITLYGLTYHRIRKEEFSFKRDENNEMLKAS
HRAARSMSLFVAAFMTQWWAMALYGIWQLTVKEVPLFVFQLGTTFSNLGG
VFNGVVYFFLRRQRIKDSKRDQEYDPNVFTPDLRTNNRKAFNYELVNNSD
KSNTN Run BLAST on NCBI transcript from alignment at sc0000130:133347..136300+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011531 ID=TCONS_00011531|Name=TCONS_00011531|organism=Clytia hemisphaerica|type=transcript|length=2954bp|location=Sequence derived from alignment at sc0000130:133347..136300+ (Clytia hemisphaerica)
agtgTGTCATTACTTATTTTTAGGGAAATATAGGGCATGACCAATGTCGG
ACATTTTCAacattgatgaaaaatgatcaaagaaaattcttcaaTAACAA
CCACCATTGCGTCAACCTTAATGACGCCGTCGCCACGGGACGGATACGAC
CTCCCGTTGTACGGTATCGAAAACACAACTAGTTTCTACATGGTACACAT
ACCAGCATTGACTTGCATCAGCTTAAGTTTATCAACTGTggttattgttt
tgtttttatcgtGTCGTGGATATAAGGATAAGAAAAGGACTAAACGTACT
TCGTTTTACAACTGGAACAAGGGGGAACGTTTTGTCATTTATTTATGTAT
ATGTGATGGTTTGTTCAATTCATTCCATTTGATTGATCATGTTTACATTA
TGGTGATCCGCAAACATGTGACGCCACCTGAATTGTGCAGGTTTTATGGC
TTCATGCTGGTCGAATTCATTGGTAAGTACTGTtagctctctctaattcg
aatctctatttttcgaatctttctctaattcgaataaataTATGGTcctt
tgaagatcgaataagAGCGAGTAAAACAAACACATTTTCTAGACATTTCT
AACTTATATTGTAATCTTTTTATTGCTGACAGCACatttaaaacttaatt
tttacgTAGAATTTGCGAGATTAGGCTTCATTGcattatcgaccgccgga
ggcggtttctttcatagtggtacgctaatctcgttttgccttggctcatt
actttgtctgccatttactttcggNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgggggggatcaaat
aaaaaaggggggggtttggaaattttggtcaattttctaatCAATCAGTT
ATATTCTATCATTGTTGGCTCGTGACTATAAtacttcatactctttcttg
ttgataattttgctggtaggtgggaaagcgagtttccttcgaaacggaNN
NNNNNNNNNNNNNNNNNTGACATGTAgacgttaataatgtgcgcgcgctc
tttcgcgagcgtgatgcgtgatggaaggcggtcgtttcagtgtggtttag
atccacactgtgacctagttataTATGCATATATTATTAGAACTAGAACA
AGAATCTCTCAAATTCAAAAGTGTTATTCTGGTCCCAGACCTTTTGCATT
TCTTTAACCCAAACTCTCATGAAATCGGACGATTACNAGATGGgaatata
gggggggatgaaataaacctaggggggttcatacccctctgcaaactatt
aTGAgacatgattttttctgaagTCTTTATATAAATGCGATTCAAAGTTT
GATCATTTTCCTCTCAGGTGCACAAATCTTCATGGTCAACTTGATCGCAA
TAAATGCGTTTTTATTGATCTACTTTCGCAAGAACATTGACTTTGGTAAA
TATGACCACAGATTGGTGATATGGACTTTCGGAATGCCTTGCATTGGAGG
TATCACATGTCTAGCGTTAAATGCTCTCGGTCCAAATGGCATATTGTAAG
TAAATGATTCCATAAATCATCTCCAGTATTTAAAAGAGATCCTCTATCTT
TTGTAACTTAATTGAGCTCATATTCCTATTCTTAACCCCTGGGGTGGTAA
ATGTTTTGAAATCCCATGACCACAATAATCAAGATACAGCGTTGAGAAAA
GAAATTCTAGCAGCATGACATTAATTACTGTTTAATAGATCGTTGAGTGA
TACCCTGGACCTTAAGACTTTTATACAACCCAAAGAACTCAGCAGTTGCA
NTGTTGAGTGATTACCTCTTctaaactacttgagatatcaagttgaaatt
ttcagggtctttttttcttgtgtgatagatcatttggtccaatttcagca
aaatccaagagggtgaGGTGTCACACTTTCTTCCttctgaaattcttttt
ttaaatggctcTTAAACCTGCTTTACGGAGAATTTAAAGTATTTCGAGAT
TTCACTACTCTGCTCAACTGGATCTGATTaaaagttgaaagaaatgaata
ataaaaatttcaagaaaaaaattacctctGGTACAAAGTAGATGTACCGG
GTGAATCAAAAATAGTGTTTATGAACTTCAGATTTTGATGTGTAGCCTAT
TAAATCATGTACAGCATTGTACAACATAATTATGCAAGATAATGTCATTT
TCATTCTCTCTCTATAGCTGTTTCTTCGACGGTGTTAAAGGAGTTATCCC
GAACCTGGTCATCTGTTCAGCTTTCCTGTCCACAATCTTATTCATAAACA
TCACGCTATACGGTCTTACATATCACCGCATACGAAAAGAAGAATTCAGC
TTCAAGCGAGATGAAAATAACGAGATGCTCAAAGCCTCACATCGCGCGGC
CCGTTCGATGTCTTTGTTTGTGGCAGCCTTCATGACACAATGGTGGGCAA
TGGCTCTGTACGGAATCTGGCAGCTAACTGTCAAAGAAGTGCCTTTATTT
GTTTTTCAGCTTGGAACAACTTTTTCTAACTTGGGAGGAGTTTTTAATGG
AGTAGTGTATTTCTTTTTGAGAAGGCAACGAATTAAAGACAGTAAACGAG
ACCAGGAGTACGACCCTAATGTTTTCACACCGGACTTGAGAACAAACAAT
CGAAAAGCATTCAATTATGAACTAGTAAATAATTCAGACAAGTCAAATAC
TAATTGAAGTTGAGATTAAGTATTCGGGCGGTATTTGATCAAATATTCAA
ATAGTGGAATTATGCAATTATGTAATTATGAATTCAAATACAGAAGCTAA
TAAATAAACGAATCAACAAGCTATTTACCTTTTTCTAAATAATTCGAGAG
GATGCCATGCGATAAACAGGGTCCCAgcaatgttaaattgattcatCCAT
TTGTTGTTTCTTTACCAGTATCACCATgttgaatttttatttcttataat
ttcg Coding sequence (CDS) from alignment at sc0000130:133347..136300+ >TCONS_00011531 ID=TCONS_00011531|Name=TCONS_00011531|organism=Clytia hemisphaerica|type=CDS|length=3204bp|location=Sequence derived from alignment at sc0000130:133347..136300+ (Clytia hemisphaerica)
atgatcaaagaaaattcttcaaTAACAACCACCATTGCGTCAACCTTAAT
GACGCCGTCGCCACGGGACGGATACGACCTCCCGTTGTACGGTATCGAAA
ACACAACTAGTTTCTACATGGTACACATACCAGCATTGACTTGCATCAGC
TTAAGTTTATCAACTGTggttattgttttgtttttatcgtGTCGTGGATA
TAAGGATAAGAAAAGGACTAAACGTACTTCGTTTTACAACTGGAACAAGG
GGGAACGTTTTGTCATTTATTTATGTATATGTGATGGTTTGTTCAATTCA
TTCCATTTGATTGATCATGTTTACATTATGGTGATCCGCAAACATGTGAC
GCCACCTGAATTGTGCAGGTTTTATGGCTTCATGCTGGTCGAATTCATTG
GTGCACAAATCTTCATGGTCAACTTGATCGCAATAAATGCGTTTTTATTG
ATCTACTTTCGCAAGAACATTGACTTTGGTAAATATGACCACAGATTGGT
GATATGGACTTTCGGAATGCCTTGCATTGGAGGTATCACATGTCTAGCGT
TAAATGCTCTCGGTCCAAATGGCATATTCTGTTTCTTCGACGGTGTTAAA
GGAGTTATCCCGAACCTGGTCATCTGTTCAGCTTTCCTGTCCACAATCTT
ATTCATAAACATCACGCTATACGGTCTTACATATCACCGCATACGAAAAG
AAGAATTCAGCTTCAAGCGAGATGAAAATAACGAGATGCTCAAAGCCTCA
CATCGCGCGGCCCGTTCGATGTCTTTGTTTGTGGCAGCCTTCATGACACA
ATGGTGGGCAATGGCTCTGTACGGAATCTGGCAGCTAACTGTCAAAGAAG
TGCCTTTATTTGTTTTTCAGCTTGGAACAACTTTTTCTAACTTGGGAGGA
GTTTTTAATGGAGTAGTGTATTTCTTTTTGAGAAGGCAACGAATTAAAGA
CAGTAAACGAGACCAGGAGTACGACCCTAATGTTTTCACACCGGACTTGA
GAACAAACAATCGAAAAGCATTCAATTATGAACTAGTAAATAATTCAGAC
AAGTCAAATACTAATTGAatgatcaaagaaaattcttcaaTAACAACCAC
CATTGCGTCAACCTTAATGACGCCGTCGCCACGGGACGGATACGACCTCC
CGTTGTACGGTATCGAAAACACAACTAGTTTCTACATGGTACACATACCA
GCATTGACTTGCATCAGCTTAAGTTTATCAACTGTggttattgttttgtt
tttatcgtGTCGTGGATATAAGGATAAGAAAAGGACTAAACGTACTTCGT
TTTACAACTGGAACAAGGGGGAACGTTTTGTCATTTATTTATGTATATGT
GATGGTTTGTTCAATTCATTCCATTTGATTGATCATGTTTACATTATGGT
GATCCGCAAACATGTGACGCCACCTGAATTGTGCAGGTTTTATGGCTTCA
TGCTGGTCGAATTCATTGGTGCACAAATCTTCATGGTCAACTTGATCGCA
ATAAATGCGTTTTTATTGATCTACTTTCGCAAGAACATTGACTTTGGTAA
ATATGACCACAGATTGGTGATATGGACTTTCGGAATGCCTTGCATTGGAG
GTATCACATGTCTAGCGTTAAATGCTCTCGGTCCAAATGGCATATTCTGT
TTCTTCGACGGTGTTAAAGGAGTTATCCCGAACCTGGTCATCTGTTCAGC
TTTCCTGTCCACAATCTTATTCATAAACATCACGCTATACGGTCTTACAT
ATCACCGCATACGAAAAGAAGAATTCAGCTTCAAGCGAGATGAAAATAAC
GAGATGCTCAAAGCCTCACATCGCGCGGCCCGTTCGATGTCTTTGTTTGT
GGCAGCCTTCATGACACAATGGTGGGCAATGGCTCTGTACGGAATCTGGC
AGCTAACTGTCAAAGAAGTGCCTTTATTTGTTTTTCAGCTTGGAACAACT
TTTTCTAACTTGGGAGGAGTTTTTAATGGAGTAGTGTATTTCTTTTTGAG
AAGGCAACGAATTAAAGACAGTAAACGAGACCAGGAGTACGACCCTAATG
TTTTCACACCGGACTTGAGAACAAACAATCGAAAAGCATTCAATTATGAA
CTAGTAAATAATTCAGACAAGTCAAATACTAATTGAatgatcaaagaaaa
ttcttcaaTAACAACCACCATTGCGTCAACCTTAATGACGCCGTCGCCAC
GGGACGGATACGACCTCCCGTTGTACGGTATCGAAAACACAACTAGTTTC
TACATGGTACACATACCAGCATTGACTTGCATCAGCTTAAGTTTATCAAC
TGTggttattgttttgtttttatcgtGTCGTGGATATAAGGATAAGAAAA
GGACTAAACGTACTTCGTTTTACAACTGGAACAAGGGGGAACGTTTTGTC
ATTTATTTATGTATATGTGATGGTTTGTTCAATTCATTCCATTTGATTGA
TCATGTTTACATTATGGTGATCCGCAAACATGTGACGCCACCTGAATTGT
GCAGGTTTTATGGCTTCATGCTGGTCGAATTCATTGGTGCACAAATCTTC
ATGGTCAACTTGATCGCAATAAATGCGTTTTTATTGATCTACTTTCGCAA
GAACATTGACTTTGGTAAATATGACCACAGATTGGTGATATGGACTTTCG
GAATGCCTTGCATTGGAGGTATCACATGTCTAGCGTTAAATGCTCTCGGT
CCAAATGGCATATTCTGTTTCTTCGACGGTGTTAAAGGAGTTATCCCGAA
CCTGGTCATCTGTTCAGCTTTCCTGTCCACAATCTTATTCATAAACATCA
CGCTATACGGTCTTACATATCACCGCATACGAAAAGAAGAATTCAGCTTC
AAGCGAGATGAAAATAACGAGATGCTCAAAGCCTCACATCGCGCGGCCCG
TTCGATGTCTTTGTTTGTGGCAGCCTTCATGACACAATGGTGGGCAATGG
CTCTGTACGGAATCTGGCAGCTAACTGTCAAAGAAGTGCCTTTATTTGTT
TTTCAGCTTGGAACAACTTTTTCTAACTTGGGAGGAGTTTTTAATGGAGT
AGTGTATTTCTTTTTGAGAAGGCAACGAATTAAAGACAGTAAACGAGACC
AGGAGTACGACCCTAATGTTTTCACACCGGACTTGAGAACAAACAATCGA
AAAGCATTCAATTATGAACTAGTAAATAATTCAGACAAGTCAAATACTAA
TTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011531-exon-sc0000130-1491911889:133347..133818 | TCONS_00011531-exon-sc0000130-1491911889:133347..133818 | Clytia hemisphaerica | exon |
| TCONS_00011531-exon-sc0000130-1510915933:133347..133818 | TCONS_00011531-exon-sc0000130-1510915933:133347..133818 | Clytia hemisphaerica | exon |
| TCONS_00011531-exon-sc0000130-1575043694:133347..133818 | TCONS_00011531-exon-sc0000130-1575043694:133347..133818 | Clytia hemisphaerica | exon |
| TCONS_00011531-exon-sc0000130-1491911889:134714..134891 | TCONS_00011531-exon-sc0000130-1491911889:134714..134891 | Clytia hemisphaerica | exon |
| TCONS_00011531-exon-sc0000130-1510915933:134714..134891 | TCONS_00011531-exon-sc0000130-1510915933:134714..134891 | Clytia hemisphaerica | exon |
| TCONS_00011531-exon-sc0000130-1575043694:134714..134891 | TCONS_00011531-exon-sc0000130-1575043694:134714..134891 | Clytia hemisphaerica | exon |
| TCONS_00011531-exon-sc0000130-1491911889:135564..136300 | TCONS_00011531-exon-sc0000130-1491911889:135564..136300 | Clytia hemisphaerica | exon |
| TCONS_00011531-exon-sc0000130-1510915933:135564..136300 | TCONS_00011531-exon-sc0000130-1510915933:135564..136300 | Clytia hemisphaerica | exon |
| TCONS_00011531-exon-sc0000130-1575043694:135564..136300 | TCONS_00011531-exon-sc0000130-1575043694:135564..136300 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000130 | supercontig | sc0000130:133347..136300 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000276 | GPCR_Rhodpsn |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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