TCONS_00011529 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011529
Unique NameTCONS_00011529
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1352

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011529 ID=TCONS_00011529|Name=TCONS_00011529|organism=Clytia hemisphaerica|type=transcript|length=1352bp
AGAAAgcgactcaatatgagttaagatggaaagaagtaactcaatatgag
tcaaaaaaaaattttttgatatatATATGGCAAGTTTTAACACTCCGAGA
AagagaaagtttgaaaaagaaaacaaagATCTTGTTGATGTTGTCGGCTA
TTTGGAATATGTAAGCCCGAAAAAGCCCAAATTTTTTGATGCCTTCGTAA
TGCAAGAGACAAACGAAACCAGGGTTGTCGTGTATGATCTCCGTCAACAT
TCAAACTTTTTGGAAGCTGTCAAGAAAGGTGTAACAATAACCTGTCTTGC
CAAGATGACTGACAGCAAAGACTTGCGGTTAACTGGCCAAACTAAAATCA
TTCCAATGACTCCATCTTTCAAGCACAATGTGCTACCAACCACACTTTCG
ACAATAAAAAGTGCATTAACCGACTTGCCTATGTGGGATCGTGTTCATAT
TGAATTTATTGTTACTGGTATGGATGCCCCTGGAATCAGTGTTAAAGAAA
ATCTTCCATTCCAACAGATCTACGTATCAGATAACAGCCTGCCAACTCCA
GAACCAATAACCGTATACTTTGACATGGTTGGATCGTTCCAACAAGACAA
ATGTTACAAACTCACACATGTAACAATATCCGAGTTTGGTAACAACAAAG
TATTGAAAGCATCAGACCGCGCATCATGTCAACAGTTGCAAGATACTGCA
GTCATACTTCCAGCTGTCCCCAGTATCATCAAGATTGGTAAAATTGCCAA
GGTTAATTTGTCTTCATTCGAAGAAATCAAATTGTGTCCACACTGTAAAA
CTCAAGTCTGCTATATGAGATCGATACCATTTTGTAAAACTTGTGATGAA
GCATTGGTAGAATCAGATCTTTTAAAATCATCCACCATAAAGTTCACCTT
CAAAGATTCTTCAACACAAATACCATTATCGTGTGACCGTAAGCTAATTC
AAAATCTTTGCAGCTCACTCAACATAAATGACGTCAATGACATCCTGTGT
GAAATACTAAACATGGAAGTAACTATCAGATTGAAGAAGACAAATAATGA
AATCATTTCGATAGATAGAGCCGATACCAACAATGACAGTGGTGATGAAA
CAAATCAGGGAAGTGATAGTGATGAAACACATCAATAGTGATGAAAAACA
TCAGGGTTGATACAATAACAACAAGTTGGAAACATTGATAgaactatata
tttttttcagtacgtttttgttgatatttctttgtttttgatattCTGAG
TATTCTCTGGTCTTGAATATAAAAAGCATGAGTACAattaagttttctta
aaaaggaaatatttgCTACAAGTCAATTCAAACTGCACCAGAGACCAAAA
AT
Run BLAST on NCBI

protein sequence of TCONS_00011529-protein

>TCONS_00011529-protein ID=TCONS_00011529-protein|Name=TCONS_00011529-protein|organism=Clytia hemisphaerica|type=polypeptide|length=353bp
MASFNTPRKRKFEKENKDLVDVVGYLEYVSPKKPKFFDAFVMQETNETRV
VVYDLRQHSNFLEAVKKGVTITCLAKMTDSKDLRLTGQTKIIPMTPSFKH
NVLPTTLSTIKSALTDLPMWDRVHIEFIVTGMDAPGISVKENLPFQQIYV
SDNSLPTPEPITVYFDMVGSFQQDKCYKLTHVTISEFGNNKVLKASDRAS
CQQLQDTAVILPAVPSIIKIGKIAKVNLSSFEEIKLCPHCKTQVCYMRSI
PFCKTCDEALVESDLLKSSTIKFTFKDSSTQIPLSCDRKLIQNLCSSLNI
NDVNDILCEILNMEVTIRLKKTNNEIISIDRADTNNDSGDETNQGSDSDE
THQ
Run BLAST on NCBI

transcript from alignment at sc0000130:10743..12699+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011529 ID=TCONS_00011529|Name=TCONS_00011529|organism=Clytia hemisphaerica|type=transcript|length=1957bp|location=Sequence derived from alignment at sc0000130:10743..12699+ (Clytia hemisphaerica)
AGAAAgcgactcaatatgagttaagatggaaagaagtaactcaatatgag
tcaaaaaaaaattttttgatatatATATGGCAAGTTTTAACACTCCGAGA
AagagaaagtttgaaaaagaaaacaaaggtAATGAAATTAATTGCCAATT
AATCATCAACTATTCAAGAAAATATACACTTTTTGTCAAGGAAAAGGTCC
TTATtaataaaaaactgaaaaatttctAGTATTTTGTCCCATTAGTCCta
atttttagcaattttctttgaattttcaaaattcatctaAAATGTATATA
CAAGTttgaaatggcattttttgaatctcaaaggtgaaaaaaaattcagt
tgCCCGGCCATATGGTAGGCAACAtcaaatttttctgttttgatcTTCAA
TGTAAACTTTCGACAGAAATTACAACATGTGTATGTAtggaaaaattgaa
agagatttgaaattttattatgaAGACTGGTCCAAAAACTTGCTGTACTA
ATTTTACTAAATTTTAGCCTATTTGTGTCCTAATTTTCCTacattttggc
caaaatttgtcCTAATTTACTAACtaaatggcaaaaaaaattggctgGGT
GGCCTGCATTTTTAAGGGTCATCCACTGATCTTATCTTGCTGTCTTTGCT
ATCTAAGGTAATCTAATTTAATCACAATAAACACAAAATCTGATTCCATT
GTCCTAAAACTTTTTACAATACTTTATTTTCAGATCTTGTTGATGTTGTC
GGCTATTTGGAATATGTAAGCCCGAAAAAGCCCAAATTTTTTGATGCCTT
CGTAATGCAAGAGACAAACGAAACCAGGGTTGTCGTGTATGATCTCCGTC
AACATTCAAACTTTTTGGAAGCTGTCAAGAAAGGTGTAACAATAACCTGT
CTTGCCAAGATGACTGACAGCAAAGACTTGCGGTTAACTGGCCAAACTAA
AATCATTCCAATGACTCCATCTTTCAAGCACAATGTGCTACCAACCACAC
TTTCGACAATAAAAAGTGCATTAACCGACTTGCCTATGTGGGATCGTGTT
CATATTGAATTTATTGTTACTGGTATGGATGCCCCTGGAATCAGTGTTAA
AGAAAATCTTCCATTCCAACAGATCTACGTATCAGATAACAGCCTGCCAA
CTCCAGAACCAATAACCGTATACTTTGACATGGTTGGATCGTTCCAACAA
GACAAATGTTACAAACTCACACATGTAACAATATCCGAGTTTGGTAACAA
CAAAGTATTGAAAGCATCAGACCGCGCATCATGTCAACAGTTGCAAGATA
CTGCAGTCATACTTCCAGCTGTCCCCAGTATCATCAAGATTGGTAAAATT
GCCAAGGTTAATTTGTCTTCATTCGAAGAAATCAAATTGTGTCCACACTG
TAAAACTCAAGTCTGCTATATGAGATCGATACCATTTTGTAAAACTTGTG
ATGAAGCATTGGTAGAATCAGATCTTTTAAAATCATCCACCATAAAGTTC
ACCTTCAAAGATTCTTCAACACAAATACCATTATCGTGTGACCGTAAGCT
AATTCAAAATCTTTGCAGCTCACTCAACATAAATGACGTCAATGACATCC
TGTGTGAAATACTAAACATGGAAGTAACTATCAGATTGAAGAAGACAAAT
AATGAAATCATTTCGATAGATAGAGCCGATACCAACAATGACAGTGGTGA
TGAAACAAATCAGGGAAGTGATAGTGATGAAACACATCAATAGTGATGAA
AAACATCAGGGTTGATACAATAACAACAAGTTGGAAACATTGATAgaact
atatatttttttcagtacgtttttgttgatatttctttgtttttgatatt
CTGAGTATTCTCTGGTCTTGAATATAAAAAGCATGAGTACAattaagttt
tcttaaaaaggaaatatttgCTACAAGTCAATTCAAACTGCACCAGAGAC
CAAAAAT

Coding sequence (CDS) from alignment at sc0000130:10743..12699+

>TCONS_00011529 ID=TCONS_00011529|Name=TCONS_00011529|organism=Clytia hemisphaerica|type=CDS|length=2124bp|location=Sequence derived from alignment at sc0000130:10743..12699+ (Clytia hemisphaerica)
ATGGCAAGTTTTAACACTCCGAGAAagagaaagtttgaaaaagaaaacaa
agATCTTGTTGATGTTGTCGGCTATTTGGAATATGTAAGCCCGAAAAAGC
CCAAATTTTTTGATGCCTTCGTAATGCAAGAGACAAACGAAACCAGGGTT
GTCGTGTATGATCTCCGTCAACATTCAAACTTTTTGGAAGCTGTCAAGAA
AGGTGTAACAATAACCTGTCTTGCCAAGATGACTGACAGCAAAGACTTGC
GGTTAACTGGCCAAACTAAAATCATTCCAATGACTCCATCTTTCAAGCAC
AATGTGCTACCAACCACACTTTCGACAATAAAAAGTGCATTAACCGACTT
GCCTATGTGGGATCGTGTTCATATTGAATTTATTGTTACTGGTATGGATG
CCCCTGGAATCAGTGTTAAAGAAAATCTTCCATTCCAACAGATCTACGTA
TCAGATAACAGCCTGCCAACTCCAGAACCAATAACCGTATACTTTGACAT
GGTTGGATCGTTCCAACAAGACAAATGTTACAAACTCACACATGTAACAA
TATCCGAGTTTGGTAACAACAAAGTATTGAAAGCATCAGACCGCGCATCA
TGTCAACAGTTGCAAGATACTGCAGTCATACTTCCAGCTGTCCCCAGTAT
CATCAAGATTGGTAAAATTGCCAAGGTTAATTTGTCTTCATTCGAAGAAA
TCAAATTGTGTCCACACTGTAAAACTCAAGTCTGCTATATGAGATCGATA
CCATTTTGTAAAACTTGTGATGAAGCATTGGTAGAATCAGATCTTTTAAA
ATCATCCACCATAAAGTTCACCTTCAAAGATTCTTCAACACAAATACCAT
TATCGTGTGACCGTAAGCTAATTCAAAATCTTTGCAGCTCACTCAACATA
AATGACGTCAATGACATCCTGTGTGAAATACTAAACATGGAAGTAACTAT
CAGATTGAAGAAGACAAATAATGAAATCATTTCGATAGATAGAGCCGATA
CCAACAATGACAGTGGTGATGAAACAAATCAGGGAAGTGATAGTGATGAA
ACACATCAATAGATGGCAAGTTTTAACACTCCGAGAAagagaaagtttga
aaaagaaaacaaagATCTTGTTGATGTTGTCGGCTATTTGGAATATGTAA
GCCCGAAAAAGCCCAAATTTTTTGATGCCTTCGTAATGCAAGAGACAAAC
GAAACCAGGGTTGTCGTGTATGATCTCCGTCAACATTCAAACTTTTTGGA
AGCTGTCAAGAAAGGTGTAACAATAACCTGTCTTGCCAAGATGACTGACA
GCAAAGACTTGCGGTTAACTGGCCAAACTAAAATCATTCCAATGACTCCA
TCTTTCAAGCACAATGTGCTACCAACCACACTTTCGACAATAAAAAGTGC
ATTAACCGACTTGCCTATGTGGGATCGTGTTCATATTGAATTTATTGTTA
CTGGTATGGATGCCCCTGGAATCAGTGTTAAAGAAAATCTTCCATTCCAA
CAGATCTACGTATCAGATAACAGCCTGCCAACTCCAGAACCAATAACCGT
ATACTTTGACATGGTTGGATCGTTCCAACAAGACAAATGTTACAAACTCA
CACATGTAACAATATCCGAGTTTGGTAACAACAAAGTATTGAAAGCATCA
GACCGCGCATCATGTCAACAGTTGCAAGATACTGCAGTCATACTTCCAGC
TGTCCCCAGTATCATCAAGATTGGTAAAATTGCCAAGGTTAATTTGTCTT
CATTCGAAGAAATCAAATTGTGTCCACACTGTAAAACTCAAGTCTGCTAT
ATGAGATCGATACCATTTTGTAAAACTTGTGATGAAGCATTGGTAGAATC
AGATCTTTTAAAATCATCCACCATAAAGTTCACCTTCAAAGATTCTTCAA
CACAAATACCATTATCGTGTGACCGTAAGCTAATTCAAAATCTTTGCAGC
TCACTCAACATAAATGACGTCAATGACATCCTGTGTGAAATACTAAACAT
GGAAGTAACTATCAGATTGAAGAAGACAAATAATGAAATCATTTCGATAG
ATAGAGCCGATACCAACAATGACAGTGGTGATGAAACAAATCAGGGAAGT
GATAGTGATGAAACACATCAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006460XLOC_006460Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011529-proteinTCONS_00011529-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011529-exon-sc0000130-1491911889:10743..10870TCONS_00011529-exon-sc0000130-1491911889:10743..10870Clytia hemisphaericaexon
TCONS_00011529-exon-sc0000130-1510915933:10743..10870TCONS_00011529-exon-sc0000130-1510915933:10743..10870Clytia hemisphaericaexon
TCONS_00011529-exon-sc0000130-1575043694:10743..10870TCONS_00011529-exon-sc0000130-1575043694:10743..10870Clytia hemisphaericaexon
TCONS_00011529-exon-sc0000130-1491911889:11476..12699TCONS_00011529-exon-sc0000130-1491911889:11476..12699Clytia hemisphaericaexon
TCONS_00011529-exon-sc0000130-1510915933:11476..12699TCONS_00011529-exon-sc0000130-1510915933:11476..12699Clytia hemisphaericaexon
TCONS_00011529-exon-sc0000130-1575043694:11476..12699TCONS_00011529-exon-sc0000130-1575043694:11476..12699Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000130supercontigsc0000130:10743..12699 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.682861	0.605361	0.461271	0.449253	19.8272	16.0575	18.6463	19.7558	6.65762	6.27152	10.3306	4.73698	5.81975	6.7252	13.3329	18.4831	18.7581	22.437	21.8742	23.0426	24.6295	21.898	8.26125	10.0347	0.299928	0.179517	11.1787	9.2278	10.6174	13.8324
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011529 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top