TCONS_00011528 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011528
Unique NameTCONS_00011528
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1263

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011528 ID=TCONS_00011528|Name=TCONS_00011528|organism=Clytia hemisphaerica|type=transcript|length=1263bp
tttagatAAGATATATAACTCAGACacataaaagtaaaaaatcaacaaac
aatgacgtcatcattagaTCAATTCTGTCAACGAATACCCAAATGTGAAT
TACACGCTCACTTAAATGGCTCTCTCAGcaccaaaacaatgaaaaaactc
TTGAAACATCATCAAGATAAATATCCCGGTGAAATCcctcatgaaaaatt
gaatgattaCATTGAGAAAAATCAACAAATGGAAGGTcttgattttggta
ttttcgATGTAGTGCGTTCGATCACGGATAATCCTGCGGCCGTTCGTATG
GCCACTTATGACGTCATTCAGGAATTCGAACAAGATGGTGTACGATATTT
AGAGTTGAGATCAACGCCACGGGGCGTGGAAGGGCGGATGACGAAATCGG
AATATTGTGATAGTGTCATTGACGGAATCCTTGATGCTCAAAAAGAtggt
tttgaaattattgttcgATTTTTAATATCTATCGATCGACGAAAATTAGa
agattttgacgaaaatgttggtttgtttttgaaacttaGGAAGCGTTATC
CGGAAATATTGGCCGGTCTTGATATATCTGGTGATCCAAGAGTGAATTCA
ATTACAGAACTGCTACCCAAGCTTGGGGAGTTACGCGAACAAGGTGTTAA
ATGCAGTATTCATTCAGCggaaattttgaatgaatcagAAACAATTGATG
TTTTGAGATACAAACCAGACCGAATCGGTCACGGTACTTTTATTCATCCT
GAGACAGGGGGTACGCAACATCAACTTGATGAATTGTTGAGAACAGAAAC
ACCTGTTGAGTGTTGTTTGACTAGTAATGTGCTTTGCAAAACTTCACCCA
GTTATGCGAAGCATCACGCTAATTATCTACATAATGATGGTATCTCCATA
ATGTTATGCACCGATGATAAAGGTGTTTTCAAATGTTCACTTTCGGGAGA
ATATGAATTAGCCATGAAACATTTTGGTTGGGACAAAGATTTTATGTTTA
ATTTATCGTTCAGTTCTATTGATCATATATTTGCAACagatgaaattaaa
atgaaattaaagaaaGAGTGGGAACAATGGAAAATGAATAATCAGCATTT
ATTTGAATGTTAATATTTTTATTGCTAATAAATGATGATGATGTAAATAA
TTCCCATTGTCAGCTCCTTTATCTCAAAGTGATACTATTATTTAGAGAAA
TAGAATGTTAGTTTTGAGAAATTTACTGGTggctgttttcaaattttaag
caCTTGCCGCATG
Run BLAST on NCBI

protein sequence of TCONS_00011528-protein

>TCONS_00011528-protein ID=TCONS_00011528-protein|Name=TCONS_00011528-protein|organism=Clytia hemisphaerica|type=polypeptide|length=353bp
MTSSLDQFCQRIPKCELHAHLNGSLSTKTMKKLLKHHQDKYPGEIPHEKL
NDYIEKNQQMEGLDFGIFDVVRSITDNPAAVRMATYDVIQEFEQDGVRYL
ELRSTPRGVEGRMTKSEYCDSVIDGILDAQKDGFEIIVRFLISIDRRKLE
DFDENVGLFLKLRKRYPEILAGLDISGDPRVNSITELLPKLGELREQGVK
CSIHSAEILNESETIDVLRYKPDRIGHGTFIHPETGGTQHQLDELLRTET
PVECCLTSNVLCKTSPSYAKHHANYLHNDGISIMLCTDDKGVFKCSLSGE
YELAMKHFGWDKDFMFNLSFSSIDHIFATDEIKMKLKKEWEQWKMNNQHL
FEC
Run BLAST on NCBI

transcript from alignment at sc0000128:525839..527101

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011528 ID=TCONS_00011528|Name=TCONS_00011528|organism=Clytia hemisphaerica|type=transcript|length=1263bp|location=Sequence derived from alignment at sc0000128:525839..527101 (Clytia hemisphaerica)
CATGCGGCAAGtgcttaaaatttgaaaacagccACCAGTAAATTTCTCAA
AACTAACATTCTATTTCTCTAAATAATAGTATCACTTTGAGATAAAGGAG
CTGACAATGGGAATTATTTACATCATCATCATTTATTAGCAATAAAAATA
TTAACATTCAAATAAATGCTGATTATTCATTTTCCATTGTTCCCACTCtt
tctttaatttcattttaatttcatctGTTGCAAATATATGATCAATAGAA
CTGAACGATAAATTAAACATAAAATCTTTGTCCCAACCAAAATGTTTCAT
GGCTAATTCATATTCTCCCGAAAGTGAACATTTGAAAACACCTTTATCAT
CGGTGCATAACATTATGGAGATACCATCATTATGTAGATAATTAGCGTGA
TGCTTCGCATAACTGGGTGAAGTTTTGCAAAGCACATTACTAGTCAAACA
ACACTCAACAGGTGTTTCTGTTCTCAACAATTCATCAAGTTGATGTTGCG
TACCCCCTGTCTCAGGATGAATAAAAGTACCGTGACCGATTCGGTCTGGT
TTGTATCTCAAAACATCAATTGTTTctgattcattcaaaatttccGCTGA
ATGAATACTGCATTTAACACCTTGTTCGCGTAACTCCCCAAGCTTGGGTA
GCAGTTCTGTAATTGAATTCACTCTTGGATCACCAGATATATCAAGACCG
GCCAATATTTCCGGATAACGCTTCCtaagtttcaaaaacaaaccaacatt
ttcgtcaaaatcttCTAATTTTCGTCGATCGATAGATATTAAAAATcgaa
caataatttcaaaaccaTCTTTTTGAGCATCAAGGATTCCGTCAATGACA
CTATCACAATATTCCGATTTCGTCATCCGCCCTTCCACGCCCCGTGGCGT
TGATCTCAACTCTAAATATCGTACACCATCTTGTTCGAATTCCTGAATGA
CGTCATAAGTGGCCATACGAACGGCCGCAGGATTATCCGTGATCGAACGC
ACTACATcgaaaataccaaaatcaagACCTTCCATTTGTTGATTTTTCTC
AATGtaatcattcaatttttcatgaggGATTTCACCGGGATATTTATCTT
GATGATGTTTCAAgagttttttcattgttttggtgCTGAGAGAGCCATTT
AAGTGAGCGTGTAATTCACATTTGGGTATTCGTTGACAGAATTGAtctaa
tgatgacgtcattgtttgttgattttttacttttatgtGTCTGAGTTATA
TATCTTatctaaa

Coding sequence (CDS) from alignment at sc0000128:525839..527101

>TCONS_00011528 ID=TCONS_00011528|Name=TCONS_00011528|organism=Clytia hemisphaerica|type=CDS|length=1062bp|location=Sequence derived from alignment at sc0000128:525839..527101 (Clytia hemisphaerica)
TTAACATTCAAATAAATGCTGATTATTCATTTTCCATTGTTCCCACTCtt
tctttaatttcattttaatttcatctGTTGCAAATATATGATCAATAGAA
CTGAACGATAAATTAAACATAAAATCTTTGTCCCAACCAAAATGTTTCAT
GGCTAATTCATATTCTCCCGAAAGTGAACATTTGAAAACACCTTTATCAT
CGGTGCATAACATTATGGAGATACCATCATTATGTAGATAATTAGCGTGA
TGCTTCGCATAACTGGGTGAAGTTTTGCAAAGCACATTACTAGTCAAACA
ACACTCAACAGGTGTTTCTGTTCTCAACAATTCATCAAGTTGATGTTGCG
TACCCCCTGTCTCAGGATGAATAAAAGTACCGTGACCGATTCGGTCTGGT
TTGTATCTCAAAACATCAATTGTTTctgattcattcaaaatttccGCTGA
ATGAATACTGCATTTAACACCTTGTTCGCGTAACTCCCCAAGCTTGGGTA
GCAGTTCTGTAATTGAATTCACTCTTGGATCACCAGATATATCAAGACCG
GCCAATATTTCCGGATAACGCTTCCtaagtttcaaaaacaaaccaacatt
ttcgtcaaaatcttCTAATTTTCGTCGATCGATAGATATTAAAAATcgaa
caataatttcaaaaccaTCTTTTTGAGCATCAAGGATTCCGTCAATGACA
CTATCACAATATTCCGATTTCGTCATCCGCCCTTCCACGCCCCGTGGCGT
TGATCTCAACTCTAAATATCGTACACCATCTTGTTCGAATTCCTGAATGA
CGTCATAAGTGGCCATACGAACGGCCGCAGGATTATCCGTGATCGAACGC
ACTACATcgaaaataccaaaatcaagACCTTCCATTTGTTGATTTTTCTC
AATGtaatcattcaatttttcatgaggGATTTCACCGGGATATTTATCTT
GATGATGTTTCAAgagttttttcattgttttggtgCTGAGAGAGCCATTT
AAGTGAGCGTGTAATTCACATTTGGGTATTCGTTGACAGAATTGAtctaa
tgatgacgtcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006459XLOC_006459Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011528-proteinTCONS_00011528-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011528-exon-sc0000128-1491911889:525839..527101TCONS_00011528-exon-sc0000128-1491911889:525839..527101Clytia hemisphaericaexon
TCONS_00011528-exon-sc0000128-1510915933:525839..527101TCONS_00011528-exon-sc0000128-1510915933:525839..527101Clytia hemisphaericaexon
TCONS_00011528-exon-sc0000128-1575043694:525839..527101TCONS_00011528-exon-sc0000128-1575043694:525839..527101Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000128supercontigsc0000128:525839..527101 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
17.3686	13.9173	4.8783	3.57949	2.85973	2.08045	3.54858	4.45653	2.21245	2.98641	2.11434	1.63647	1.70136	1.3949	3.24926	4.49202	4.39672	3.93671	1.57438	1.12328	2.01776	2.33349	15.7464	10.7719	3.36096	4.1607	1.80003	1.87179	6.42593	8.1457
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001365A/AMP_deaminase_dom
IPR032466Metal_Hydrolase
Vocabulary: Molecular Function
TermDefinition
GO:0019239deaminase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0019239 deaminase activity
Blast
[Close]
BLAST of TCONS_00011528 vs. Swiss-Prot (Human)
Match: ADAL (Adenosine deaminase-like protein OS=Homo sapiens GN=ADAL PE=2 SV=2)

HSP 1 Score: 226.098 bits (575), Expect = 3.555e-69
Identity = 135/351 (38.46%), Postives = 204/351 (58.12%), Query Frame = 1 
Query:   73 FCQRIPKCELHAHLNGXXXXXXXXXXXXHHQDKYPGEIPHEKLNDYIE-----KNQQMEGLDFGIFDVVRSITDNPAAVRMATYDVIQEFEQDGVRYLELRSTPRGVEGR-MTKSEYCDSVIDGILDAQKDGFEIIVRFLISIDRRKLEDF-DENVGLFLKLRKRYPEILAGLDISGDPRVNSITELLPKLGELREQGVKCSIHSAEILNES-ETIDVLRYKPDRIGHGTFIHPETGGTQHQLDELLRTETPVECCLTSNVLCKTSPSYAKHHANYLHNDGISIMLCTDDKGVFKCSLSGEYELAMKHFGWDKDFMFNLSFSSIDHIFATDEIKMKLKKEWEQWKMNNQHL 1101
            F   +PK ELHAHLNGS+S+        H   K   + P  K++D +      K + +E   F +F  +  +T +P  + M T DVI+EF  DGV+YLELRSTPR      MTK  Y +S+++GI  ++++  +I VR+LI++DRR       E V L  +        + GLD+SGDP V    + L  L E ++ G+K ++H +EI N+  ET  +L   PDRIGHGTF++   GG+   +D + +   P+E CLTSNV  +T PSY +HH  + ++     ++CTDDKGVF   LS EY+LA + F   +  +++LS+ SI++IFA+D  + +L+K+W   K    H+
Sbjct:   14 FYSELPKVELHAHLNGSISS--------HTMKKLIAQKPDLKIHDQMTVIDKGKKRTLEEC-FQMFQTIHQLTSSPEDILMVTKDVIKEFADDGVKYLELRSTPRRENATGMTKKTYVESILEGIKQSKQENLDIDVRYLIAVDRRGGPLVAKETVKLAEEFFLSTEGTVLGLDLSGDPTVGQAKDFLEPLLEAKKAGLKLALHLSEIPNQKKETQILLDLLPDRIGHGTFLNSGEGGSLDLVDFVRQHRIPLELCLTSNVKSQTVPSYDQHHFGFWYSIAHPSVICTDDKGVFATHLSQEYQLAAETFNLTQSQVWDLSYESINYIFASDSTRSELRKKWNHLKPRVLHI 355
The following BLAST results are available for this feature:
BLAST of TCONS_00011528 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ADAL3.555e-6938.46Adenosine deaminase-like protein OS=Homo sapiens G... [more]
back to top