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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011505 ID=TCONS_00011505|Name=TCONS_00011505|organism=Clytia hemisphaerica|type=transcript|length=4389bpRun BLAST on NCBI transcript from alignment at sc0000128:476094..500852- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011505 ID=TCONS_00011505|Name=TCONS_00011505|organism=Clytia hemisphaerica|type=transcript|length=24759bp|location=Sequence derived from alignment at sc0000128:476094..500852- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00011505 vs. Swiss-Prot (Human)
Match: F214A (Protein FAM214A OS=Homo sapiens GN=FAM214A PE=1 SV=2) HSP 1 Score: 156.377 bits (394), Expect = 2.804e-38 Identity = 96/194 (49.48%), Postives = 131/194 (67.53%), Query Frame = 1
Query: 2683 NFEESVLNGRMPINGFLEGFWAKLGASGTFCPKHINIPMEIQYFSLSDDNAPSPYLGRITLXXXXXXXXXXXXXXGTVQLTIFNPNKTXXXXXXXXYNFEDMPDYTRTFLRQKIVAA-------DSTNSKNDVPT----LHYLIHLSFVSSKSSHIYLHSDIRVLFRQRAPD------EPLKTITNGPTNPKYT 3213
NFEESVLN R G ++GF A++GASG FCP H+ +P+E+ ++S+SDDNAPSPY+G ITL + ++ YRVP GT+Q+T+FNPNKTVVK+FVV+Y+ DMP +TFLRQ+ + S N +N T L YLIHL F SSKS IYLH D+R+LF +++ + LK+ T PTNP+++
Sbjct: 881 NFEESVLNYRFDPLGIVDGFTAEVGASGAFCPTHLTLPVEVSFYSVSDDNAPSPYMGVITL-ESLGKRGYRVPPSGTIQVTLFNPNKTVVKMFVVIYDLRDMPANHQTFLRQRTFSVPVKQEVKRSVNKENIRHTEERLLRYLIHLRFQSSKSGKIYLHRDVRLLFSRKSMEVDSGAAYELKSYTESPTNPQFS 1073 HSP 2 Score: 85.5001 bits (210), Expect = 1.759e-16 Identity = 64/217 (29.49%), Postives = 104/217 (47.93%), Query Frame = 2
Query: 566 FFEVEISPTEFFQDVGVMVVESRLPDYSKSGMKAGVHS------WPITRNSKKSCCKSNLEAEPCKMVASTRSKIQLSFEEKQCLYIKVYITLEEDDFENLKHKNRVSLD----KMKSNMVLLEKWKVKVIDSCNNQDTFNVNMVLQAVRSYVHFSQLSSWLASSQGLFPHTINHRITTNEESD--DFLNTPVFHKFPLADISNTESIQIEVASLPR 1180
+FE + EF + +++ E R P+ S G H +P+T K C L C+ TRS++ L + K L I V + L D + +D +K + +LLE+W ++ + N +L AVRS+V FSQLS+WL+ S G P I +RI+ + +F TP+ H FP+ ++S+ ++++ V SLPR
Sbjct: 11 YFEYDAE--EFLVSLALLITEGRTPECSVKGRTESFHCPPAQSCYPVT---TKHECSDKLAQ--CRQARRTRSEVTLLW--KNNLPIMVEMMLLPDCCYSDDGPTTEGIDLNDPAIKQDALLLERWILEPVPRQNGDRFIEEKTLLLAVRSFVFFSQLSAWLSVSHGAIPRNILYRISAADVDLQWNFSQTPIEHVFPVPNVSHNVALKVSVQSLPR 218 The following BLAST results are available for this feature:
BLAST of TCONS_00011505 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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