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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011488 ID=TCONS_00011488|Name=TCONS_00011488|organism=Clytia hemisphaerica|type=transcript|length=1628bp
ACTAGGTACGATCACAGGAGACAAGACACCAACAGCTGACGACAtcttaa
aaacaacaaacaaggCTTTTGAAAAGATGACAGAGGAGCTGGACAGTCGA
ATTGAAGAAATGAAGGATTACGTCGATACTGAGATTATTCGTCTCTTAAA
AGATATCAAccatcaaaaatacaaatttttatattcttACTGGACTGGTT
GCATTGAAGGACCAGCAAATGAAACAGAGCTATGTCAGCGAGAAGCTAAC
CGTCTTATTCAAGCATCAGTCAACGAATTTGCGATGTATTCTGACCAGTT
TGATCGTAATACACTGAAGTTTAACCCACTGTTAACAGGAGATCAAATCA
AGAGAGTTGAAGTGAATTTGATTTTGTTTAGaaactATGTGTTTCTCAGT
GTTATGGCTATGAAGACCATCACCTCGACGTACAAAGACCAACAGGAAAA
AGCATACGTTGACCTTTACGAGAACCAACTTCAGAAGAATGTCAAATTCT
ACAATGATTACGCAAAAGCATCTGTTGATTTGGTCAAACAAATTAATCTG
AACTACACATCAAATTATTTCAGCTCTAAATATGAACAGGAAATGAGAGA
TCATGAGAAGAAGGTTCCAGATGGAACATTGCTACCTGAACCTGACTACC
TTATTACTACCTTCGTTGAAACGGAGATTAAATGCAAATTACAAATGAAT
TCAAGATTTACTGATTATTGTAAAGCTGACGTGAGTGTAATGTTGTGCAA
GAAAGGAAGCAAGCTTTATGTCAATTGTAAAAAAGGAGACCGTATTCCTG
ACAACTGGCGATACAAAAAGTCTTACTCCCATTATCCCGTATGGAGTAAG
TATGATGTTTCGCACACACCAGCTTTCTTGGCACGAGCCATCTGCAGATC
AGAGTTGAATACCAAattgaaagatttcaaaagcTCTTACGCTCTTTCAA
TCAAACGTTACTGGGAAAATGAAGTTGGAAAATTGTTATCCTGTGCAAAG
AAGTTGATTGATTCCAAGAATCTGGATAATGCAAGAGAGACAGGCGGATG
GAAATGTTGAGAAGCAAGCCACATCATCGAGTTCTCAAAAATGAACAGGA
ATGGGACTTTTCCAACAAATCCTTTATAGACATTGCTAGCCATAATTTAC
AACAATGAAccgtaatttaaaaaaaatgtataacaggAAAATGTTCATGG
TATAATTTNATGAAccgtaatttaaaaaaaatgtataacaggAAAATCTT
CATGGTATAATTgtgaacatttttataaaattaataaaatttgcaaaagt
cgTTTTGATTCATACTAAATGAAGTCCAGGTCCATAACAATTCTAAAGAG
GCCTAAGTTCAAATCTCTCCCTATTCTAAAGCGGCTTAAATCCAGGTCTC
CCCAATAAGTAAGtccattttttatgaaaattgggATATTTTGTTGTCCT
GGACATTTCTGGATCATTGTAGCTTTCTTTAGATGTGACCATTTATAGGT
CAGAAAGGCTCAAAATCTGAAGCTTTGAAGTTtgataaaaatgttgaatt
ttaaaaagaataagTCCATCAATTTGATATCAAGTTAAGGGGCCTAAGTT
CATTATTATTTTTCGACATAAGTTTATC Run BLAST on NCBI transcript from alignment at sc0000128:255668..257625- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011488 ID=TCONS_00011488|Name=TCONS_00011488|organism=Clytia hemisphaerica|type=transcript|length=1958bp|location=Sequence derived from alignment at sc0000128:255668..257625- (Clytia hemisphaerica)
ACTAGGTACGATCACAGGAGACAAGACACCAACAGCTGACGACATCTTAA
AAACAACAAACAAGGCTTTTGAAAAGATGACAGAGGAGCTGGACAGTCGA
ATTGAAGAAATGAAGGATTACGTCGATACTGAGATTATTCGTCTCTTAAA
AGATATCAACCATCAAAAATACAAATTTTTATATTCTTACTGGACTGGTT
GCATTGAAGGACCAGCAAATGAAACAGAGCTATGTCAGCGAGAAGCTAAC
CGTCTTATTCAAGCATCAGTCAACGAATTTGCGATGTATTCTGACCAGTT
TGATCGTAATACACTGAAGTTTAACCCACTGTTAACAGGAGATCAAATCA
AGAGAGTTGAAGTGAATTTGATTTTGTTTAGGTAAGAACAGATAAAGGAA
CTGAACACATGTTGTCTAATTTAAGTGACTTTGTTTGCTTTTTCAAACAG
GTTCAAAACAACGTTTCTAAAATAATCAAAATGATAGCTCCCACATAAAG
ATTTTCCGATGTTAGGTACAGTTAATTTGAAATCGACATTTGAAAATCGT
TAATTTACTCCCTTGCGGTTTCGTCTGTTTTACCTTTTCTAACTCCTGTA
AGATATATATTAGTTTTTTTCTAATAATCCAAAAAAATATCTAACGCTTG
GTGTGATGTCAGCGGAACCTAGAAATCAAAACTGTACAGTGTTGTTGTTT
TTTTTCTTTAGAAACTATGTGTTTCTCAGTGTTATGGCTATGAAGACCAT
CACCTCGACGTACAAAGACCAACAGGAAAAAGCATACGTTGACCTTTACG
AGAACCAACTTCAGAAGAATGTCAAATTCTACAATGATTACGCAAAAGCA
TCTGTTGATTTGGTCAAACAAATTAATCTGAACTACACATCAAATTATTT
CAGCTCTAAATATGAACAGGAAATGAGAGATCATGAGAAGAAGGTTCCAG
ATGGAACATTGCTACCTGAACCTGACTACCTTATTACTACCTTCGTTGAA
ACGGAGATTAAATGCAAATTACAAATGAATTCAAGATTTACTGATTATTG
TAAAGCTGACGTGAGTGTAATGTTGTGCAAGAAAGGAAGCAAGCTTTATG
TCAATTGTAAAAAAGGAGACCGTATTCCTGACAACTGGCGATACAAAAAG
TCTTACTCCCATTATCCCGTATGGAGTAAGTATGATGTTTCGCACACACC
AGCTTTCTTGGCACGAGCCATCTGCAGATCAGAGTTGAATACCAAATTGA
AAGATTTCAAAAGCTCTTACGCTCTTTCAATCAAACGTTACTGGGAAAAT
GAAGTTGGAAAATTGTTATCCTGTGCAAAGAAGTTGATTGATTCCAAGAA
TCTGGATAATGCAAGAGAGACAGGCGGATGGAAATGTTGAGAAGCAAGCC
ACATCATCGAGTTCTCAAAAATGAACAGGAATGGGACTTTTCCAACAAAT
CCTTTATAGACATTGCTAGCCATAATTTACAACAATGAACCGTAATTTAA
AAAAAATGTATAACAGGAAAATGTTCATGGTATAATTTNATGAACCGTAA
TTTAAAAAAAATGTATAACAGGAAAATCTTCATGGTATAATTGTGAACAT
TTTTATAAAATTAATAAAATTTGCAAAAGTCGTTTTGATTCATACTAAAT
GAAGTCCAGGTCCATAACAATTCTAAAGAGGCCTAAGTTCAAATCTCTCC
CTATTCTAAAGCGGCTTAAATCCAGGTCTCCCCAATAAGTAAGTCCATTT
TTTATGAAAATTGGGATATTTTGTTGTCCTGGACATTTCTGGATCATTGT
AGCTTTCTTTAGATGTGACCATTTATAGGTCAGAAAGGCTCAAAATCTGA
AGCTTTGAAGTTTGATAAAAATGTTGAATTTTAAAAAGAATAAGTCCATC
AATTTGATATCAAGTTAAGGGGCCTAAGTTCATTATTATTTTTCGACATA
AGTTTATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011488-exon-sc0000128-1575043694:257245..257625 | TCONS_00011488-exon-sc0000128-1575043694:257245..257625 | Clytia hemisphaerica | exon |
| TCONS_00011488-exon-sc0000128-1575043694:255668..256914 | TCONS_00011488-exon-sc0000128-1575043694:255668..256914 | Clytia hemisphaerica | exon |
| TCONS_00011488-exon-sc0000128-1510915933:257245..257625 | TCONS_00011488-exon-sc0000128-1510915933:257245..257625 | Clytia hemisphaerica | exon |
| TCONS_00011488-exon-sc0000128-1510915933:255668..256914 | TCONS_00011488-exon-sc0000128-1510915933:255668..256914 | Clytia hemisphaerica | exon |
| TCONS_00011488-exon-sc0000128-1491911889:257245..257625 | TCONS_00011488-exon-sc0000128-1491911889:257245..257625 | Clytia hemisphaerica | exon |
| TCONS_00011488-exon-sc0000128-1491911889:255668..256914 | TCONS_00011488-exon-sc0000128-1491911889:255668..256914 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000128 | supercontig | sc0000128:255668..257625 - |
Blast
The following BLAST results are available for this feature:
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