TCONS_00011485 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00011485
Unique Name	TCONS_00011485
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1560

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000128:224525..235705-
coding sequence from alignment at sc0000128:224525..235705-

transcript sequence

>TCONS_00011485 ID=TCONS_00011485|Name=TCONS_00011485|organism=Clytia hemisphaerica|type=transcript|length=1560bp
ATTTCAAACTTGACACCATTGAAGAAAGAAGAAGGCTGCGGAAGGTGACA
TGAGGACTTTGACACCTGAGTCTGGTATGTGTGCTTGATTCAGTTGATAT
TTCTACtcagGTGCATCCGAAGAAGGTTGAACAACAAATTGACAAGTTTA
AAATCCAAGAATTAAAGAAAAACTAGACAGAAAAACAACCAACAACCATA
ATGGCTGACAATGATGAGGAAGAGCCTAAAAAGAAAGGTAACGCTCTGCC
ACTGTGGGGTAACACACACTCTATGAACATCAACAATCTCATTGTCACTA
ATATCTTGGCCAGTCCCTACTTCAAGAATGAACTGTTcaagttaaaaact
tttcatgaAGTGATTGATGAGATTTACTACAAGGTTGAACATTTGGAGCC
GTGGGAGCGTGGTAGTAGAAAGACACATGGTCAAGTCGGAATGTGTGGTG
GTGTACGAGGTGTTGGTGCTGGAGGGATCGTATCTAGTGGTTTTTGTCTC
CTATACAAACTCTTTACTCTTAAATTGACGGAGAAACAATTACTACAACT
CATCAACCATAGAGATTCGCCATACATTCGCGGTCTCGGATTCATGTTTA
TACGGTATTGTCAACACCCCAACACGTTTTGGGACTGGTACGAGTCCTAT
CTTGAAGATGACGAGGAAGTAGATCCGAAGGCAGGCGGAGGCTCTCAGAT
GACAATCGGTCAAATGATTCGCAGTTTCCTATTGAAGCCGGACTGGTACG
GCACCTTATTCCCTCGTATACCGGTCCCCATTCATAAAGATATCAATGCA
CGCCTTCAAGAGATGAACTTGGATGACGAAAGGAAAGTGTATGCAAATGA
AGGGGCGGATGAAGAGGGAGCTGAAGGGGGctatgaaaatgaagatggcG
CCAAAGATGATGCTGAACATTCCCGACAAGACGAAGGATCGTCAAGTAAA
TCACGTGACCGAAGCCGCGATCGTCGATCTTCTAGTCGCCGAAGAAGTCG
TTCTCGTGAACGTGAACGCAAGAGAAGTCGATCGCGTGATCGAAAAAGAA
GTCACAGTCGCGATCGTAAGAGAAGTCGGAGTCGGGAACGTAGTCATGGA
CGTCATCGGGATCGTGACAGGGGCCATAGCGATCGTGATTCACGCAAGAG
AGATGGTGATAAAGATAGACATTCTCATAAGAAACATTCACGTGACCGAT
CGCGAGATCGTGGTGGTCGTCGTGATGAGAAACGAAGGAGTCGGAGTCGT
GAAAGAAGCCGACGCTAACAAATTTTAAGGAAAATGTGCATTGGGAATTC
TGAACATTACTGTTGAATTGATCGAGAACCTCGCGAGAATAATCCACCTA
TAATTAGATATACTTGAAAAGTGATATAGGCATAActtgctttttttttt
gctatcaAATACTGATACAGTAGTACATTTGTTTCTATAGTGAAGTTTTA
TTGAGAAAATTAATCTCTTGCGAAGACTTTCACTTTGTAAATATTTTAGC
TAATAAAATTTTTAACCTTCTTAATCATTTACCGACTCTAAATTCGTAAA
TACTCCTGAA

Run BLAST on NCBI

protein sequence of TCONS_00011485-protein

>TCONS_00011485-protein ID=TCONS_00011485-protein|Name=TCONS_00011485-protein|organism=Clytia hemisphaerica|type=polypeptide|length=355bp
MADNDEEEPKKKGNALPLWGNTHSMNINNLIVTNILASPYFKNELFKLKT
FHEVIDEIYYKVEHLEPWERGSRKTHGQVGMCGGVRGVGAGGIVSSGFCL
LYKLFTLKLTEKQLLQLINHRDSPYIRGLGFMFIRYCQHPNTFWDWYESY
LEDDEEVDPKAGGGSQMTIGQMIRSFLLKPDWYGTLFPRIPVPIHKDINA
RLQEMNLDDERKVYANEGADEEGAEGGYENEDGAKDDAEHSRQDEGSSSK
SRDRSRDRRSSSRRRSRSRERERKRSRSRDRKRSHSRDRKRSRSRERSHG
RHRDRDRGHSDRDSRKRDGDKDRHSHKKHSRDRSRDRGGRRDEKRRSRSR
ERSRR

Run BLAST on NCBI

transcript from alignment at sc0000128:224525..235705-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00011485 ID=TCONS_00011485|Name=TCONS_00011485|organism=Clytia hemisphaerica|type=transcript|length=11181bp|location=Sequence derived from alignment at sc0000128:224525..235705- (Clytia hemisphaerica)
ATTTCAAACTTGACACCATTGAAGAAAGAAGAAGGCTGCGGAAGGTGACA
TGAGGACTTTGACACCTGAGTCTGGTATGTGTGCTTGATTCAGTTGATAT
TTCTACTCAGGTAATTTTTTTTTAGATATTCTTTGGTCAAATAATGTTGC
ATTACTTTCTTGAAGGAGATAAAGCATGGAATATTCTAGCCTGGATCTAT
CCATATTTTAAAGTCGCAAAATTGTCGAATTGTTATCCTATTCCAGTCTG
GCACATCCTCCTTGCATACACCTTTTCCATTATTCAAACTTCTCAGAAAT
GGCCTGGGGAAATGTGCGCTCCATCGTTTGCACAAATTGTTTGGGAGGTA
AATGAACATGTTTTATCCTGTGGCGACGAGGGGTTAGGGAAAGTGGATTT
TCAGCTTCTAACTTTTGATGGCGATCTTTTTTTGCCAAAAAAATTTTCAG
GGTGGTATAATATCATGAATAGATTGAACATACTTTGAGGGCATTTTGAT
CTACAGAACTTAAGAAAAGCTCAAAAAACTAACTTTCCCTAAGGCGGTCA
TCGAAAAAAAATGCTCTGTTCGCGTCGCAACGGGTGTTAAAAATGCATGC
GGGCAGACGGGCGGTCGAAAAAATTCCCGGGTTTTTTAAAATCACGCCAG
TAATTTGAGGACGGGTGGTTACGCGAACAAAACAATTTTTCGATGGCTGA
CAGAGCGATAGAGAAAAAAGCTATATATACTTAAAAAAACAAATTGCTTT
TCCCGGATTTTTTTCCGCGTCTCCGCACCGGAAAATCAGCAAAAAATATG
ATGCGGTCGGGTGACGCAAATAGAACTATTTTTCGATGGCCGCCTAAGGC
AGTCAGGAACAATGTCTTAGTTAGGACAATGGCCTAACTAGGACAATGGC
CTAAGAAGAACGTTTTTTTATCCCTAATTAGGCCATAGATGGCCTAAGTA
GGACATTTTTAATTTGAACCCCCATTTTAAACATTTTAGGGGAAAATGCA
CATGTTAAAAAACATAACCAATCGAAAGAGCGACCTTTAGTTGGTATATG
TTGAAAATTTCTTCAAAATCTGCGGAAAGGTTTTTTCTCTATGTGTCTTT
GAATGTACAATTTGTAAAACAGCAGAACAGGAACGGAACGAGAAAGTTAC
TTTACCATTGCCACTTGGTCTACCATTATAAAAATTCTTGATTTTACAAA
TAAAGGACTGTCTACATCATAAAATTTCGGGTTTTTGTAACATGTAGACT
AGGCTTTAGGGCTAGGATAAGATATTTCTTGATTCGTTTCACCAAAATAT
TTGAAAATCACCTAGAACCTTTATTTTTTGGTGCTCTTTCGATTGGCAAT
GGTAAGAAAGTGCGCATTTTTCTTGATTTTGAGTTATAGGCAAAAATAGA
AAAAATGGCCTAGTAAGGACGTCAAAGAAATATTGTAATCCATGGTGTAG
ACGAGCAGGAGGACGAAGGAACCAGTGATGGAGACAAAAAATTCTTAGAC
GCACTTGTCAAAACAATCAAGATTCCAACACCAAGTATTAAGAGTGTTTC
AAGGATTGGAAGAAAGGCCGAAGATAAGAAAAGACCAATAAAAGTTGTCC
TTGGATCGGAAAAAGAAAAAATGACTTTCCTTCGTAATTTGGCTCCTTTA
AAAGATAACCAAGAATACAAAGGAGTCAGTGTGACTGAAGATCTTACACA
AACAGAGAGGCTACTGCTCAAAGAATGGGCAGATAAAGCAAAAGAACTCA
ACTTGGATGATCCTGAGTGGGTTAGGCGCGCTAGAGGGGATTCAAAAAAC
GGGTATTACCTCAAGAAGTTCCCACGAAATCAAAACCACTAAATCCCGTA
ATCACAAACAAAAAAAACACAAAAAAATATTAAAAATACGGAAAAACCTA
AAAAGAAGTTACAGAACGTTCGAAAAAACCTAGACATCATATACACGAAC
GCTGATCAGCTCACGAAGAAAAAGAAGAAAGAACTTGTTGAGATTACCAA
ATCAAAACCTCACATCATAGCAATATGCGAAGTAAAACCGAAAAATTGGA
AGAGAAAACGTCTCATTGAGGACTTTTCCATTCAGGGATATTCAGCACCT
TTCGAAACGAATGCACTAAATAAAGTTGGCCGTGGAATCGTCATTCTAAC
ACATGAATCGATAAAAGATCTTGTTGTCGAATTAAGATTCGAGACTGAAT
TCCAAGAAGCTTGCATGGTCAAAATTAAGTTACAAGGTAATGACACTTTG
TTATTTGGGTGAATGTATAGAAGTCCTACCAACACAGAGACATCTGCCAA
AAACAATGCTTCACTCAACCTACTACTTAGGGAAATTGGCATGAATAATA
AGTATACTCATAAATGCATTGTTGGAGATTTCAATTACAAAGACATCAAC
TGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNCTTGAGGGACACATTCTTCTTCCAGCA
CGTTGATGAGCCGACTAGAGCCAGAGGAACAGATGAACCATCGTTAATCG
ATTTGATACTCACTAATGAAGAAAACCAAGTCAATAAAATCAACTACTTA
GCTCCTCTTTGCAAAAGTGACCATAGCGTACTCAGCGGCGTCTTCATCGA
AAGTGGATACGATCGATCGGTACAAGTAGAGAGGAACTGTCTAGAGTTGA
GTATGTGATTGCACGGAACGAAGCTAACAGAAAGATAACACAAGTAAAAA
GGGAACTTGAAAAACGGATATGTGGGCAAGCAAAGAGGAGTCTAAAAAGA
TTTTGGAGACATGTTCGTAACTCCATGAAAACAAAATCTGGGATCTCGCC
TCTCCAGCGCAACCCAAAGGATAAATCTTCTCTTCACTATACGGACGAAG
ACAAAGCTGATATACTACAGGATCAGTTCTGTAGTGTATNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNGAGTTTAATCTCACTTTGGAAATGGTCAAAAAAGAACTTAAAG
GTCTCAACCCAAATAAGTCAATTGGTCCGGACGAAATTCATCCAATTATG
TTGAAGGAGCTAGCAGACTACATAGCTGTCCCGCTCCACACAATCATGAC
TGAATCATTTGATGAAAGTACTCTGCCAGACGGATGGAAGGTTGCACATG
TGTCACCAATATATAAAAAAGGGAGCAAAAATCTAGCTAAAAATACAGAC
CAGTCAGTCTTACATCCATCGCTTGCAGACTGATGGAAAGAGCGTTAAGG
GACCAAATTATGAAACATCTGGTAGATAAAAAACTATTAGCTAGTAAAGA
ATATGGATTCATCTCAAAGAGATCAACGATAACACAATTACTTACATACC
TTGATAAATGTGCGGATTCGATATCAAATAATAAAGTAGTTGATGTGATT
TATTTTGACTTTGACACCGTACCACACCGCAGACTGCTGAAAAAGCTGAA
TGCTTATGGAGTCAGAGGATCGGAGCTCAACTGGATACAGTCCTTTCTCA
TTGACCGTTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNTGGTCCACTACTTTTTGTTTTGTACATCAATGATTTACCA
GAGGCTACGAAAGCAGAAATGTTCCTGTTTGCTGACGATACAAAACTGGT
GGAAGAAATAAACAACGTCAAAGATGCGCTCAGGCTACAGGAAGACATTG
ATGCCATGGAAAAATTGTCAAAGGACTGGCTTTTAGAATTTCATCCGAAC
AAGTGTCATGTTTTAACACTGGGTAAATTTTGGAACATCAAATATGCCCA
TCCCTATACCATAGCAGGATCTGTTCTAGAACATGTTGACCACGAAAAAG
ATCTAGGAGTGATAATCGATAGTGACCTGACCTTTGAAGCCCATATATTC
AGTAAAATCAAGAAAGCTAACTTTATCGTTGGCTTGATTAGCAGGAGCTT
CGCCAGATATGTTTCAAACGTTTTTCATTGCATTTGTCAGACCCCATTTG
GAATATGTACACGTAGTATGGTCTCCAAGGCTAATCAAACATATCAATGC
AATCGAGGGCGTCCAACGAAGAGCTACAAGGCTAGTTAGTTGCTATAGAA
ACTACTCATACGAAGATCGGCTACGACTCATCAATCTACCTAGCCTAAAG
ACCAGGTGCAAATTGGTGATATGGTGGAAGTTTTCAAGAACCTCCAGATT
TATGACGAGTCTATAAGATCAGAGAAATTTACTCCTCGGACACGACCACG
ACGTCAGCATGATTACGAGCTTCAAAGGAACATTGCTAATGATGGTATGA
GAGGCTACCAAAGCAACTCTCTTTTTTACAGAAGTGTGAAACCTTGGAAT
GATCTAGAAGAAGATATTGTTGAAGCACCATCCTTACAAGTCTTCAAAGA
GCGTTTGATAAAAGAATGGGAGAAAAAACTTTATAAAATGTAAAATCAAA
AGTTCTGTTTCATAGAGGTCAATAGACCTGCGAAATATATTGCTATAAAA
TAAAATAAGGACATTTTTTATTTCCTAGTTAGTACATAATGTCCAAACTA
AGACATGATGTCCTAAGTAAGACATTGTTCCTGACTGTAAAGGCAGTCTG
AGAAATCTTGTACTGTATCCTGTAAGCACGCAATTACACAGTTAAAATTT
ACGCCCGTTTGGGATTGCATGATTGAGATTGCTTGAGCAGATTAGAGGGT
TCCGATTTTTCAAAATCAGCGCAGACATGGTCAAGCCGACAAAATTTTAT
AACAGGATCATTTTCTACGATAAATTTTGAGTAAGATATAGTCCAAGGCT
TTCTAATTTTTACGAAGCAATCGGAAGCAAATAAAGTTTTTTTAAATGAT
AGACTAGTTTTAAGGAAGCAATTGCATGCTTATCACCCATTCAAATAGTG
ATAAGCTATTTTGATAGCCATGTAATTGCACGTCTAAATCTCAGAAGTTA
AGCGCGCAATCAAGAGGGTTTCCCAAACTGTAAGGAAACACAGGCAAAAA
CAGGTTTGTTTACCTCCAGAAAACAAACGGTGGAGACCATCAAAATAATG
TGCACACATAATAATAATGTGCGCACATTAGTTTTGCGAACTACAGGAAA
GGTGTATTGCATAGGGTGTTCATTTGCAAAAGTTTTTCCATATTCAGTGC
AAATGCAATAGTCTTGGGCAAAACATGCTAATTCGACCTTTAAATTGAAA
ATTGCAAAAGACAAATTGAAACGGNAACATGCTAATTCGACCTTTAAATT
GAAAATGGCAAAAGACAAATTGAAACGACAACTTCTTTTCTTCTAGAATA
ATCTTCAAATATGTAAGTAAAAAATCACCCATTGGAAAAAAATTTCATCT
ATCCATTTTTCTGGAAATATAATGCAATTACACTGGGTATATATTAGTAA
CTTTTATCTTCTACCCATTGTATTTGCAACTGGTCGCAGCCCCAAATAAC
ACAACCCAGGGCATGGCCTGAAATGTTCTGGCCTCGCGAACACACAGGTT
CGCGCAATTTCAGGCCATGTTTGGGCCAGATTTAAGTCAGTCATAAAAAC
AGAGAAACACTACATTTGAAAAACAGAGGGTCCGTTTTTGTGAAATGCAA
GGACCGCAATGACGGACCGTCTACATAAACACATCCATTTCTGGACTTTT
TTTTGCAGACCGACCAACTGACTCATTTTTTTACCTAAAAATGACGGGAG
CACAAGTTTTCTCTGGAAAACTCAACCAATTGATCTGATCATTTCTGACA
AATCAAATTCAAAGAGTCTCAGTAAATTCAACCTTGTCTGCTAAAACAGA
AGTTATATCAGGTGCTCCACAAGGCTCAGTGCTCAGCCCACTTCTATTTC
TCATCATAATCCAAGACAACAAAGTCAACAGACGACACTCGCTTGATAAA
GGAGCAACCTAGCTGATAAAGAGTATCTCCAAAACAATATGCTGTTTAGG
AATAGACAGAAAGGAACAATATGAAATTTGAACATCTTGCATATGGTAAA
AATGACACCCTGAAACAAAACTCATCCTACTTCTCTAACACAGCAACACT
TATTGAAACCAAAGTACAAGTGTGTCACACTGGATAATGACATATGACCA
ACACATTACAAGATCAAATTCAAAAAGTAAAGAACATAAGTGCATGGATC
TATTGAACTTTTAAATTGAGGAAGGTAGGAGTGATGCTTACCTTATGAAA
ATCTTTGGTAATTCCACACCCAGATTATCGCTCTCAACTTTGGTTGCCGT
GGAAATGAAGTCTAACTCAGAATTGGAAGAAGTTCAAAAATCGTTTCTAC
ATGGCATCCCATCACTACGCCACTTAAACTACTGGCAAAAGCTGAAAACA
CTAAGGTTATACAGTCTCAAAAGATGAAGATAACAATGCCAGATCATTTA
CACTTGGAACGTCATTGAAGGCAATGTACCAAACAGGAATTTTGATGATT
AAATGGGAGGCATATTTTGTCGCTCAAGCAGAGATTGAGCAGAACTTGTA
ATCTCAAACCTTTCAATACCATACATAAAAACATCTGGAAGGGATGTCTT
TCACCAGAGGGTCAATTGCTCAAAAGACCACTTCAAAAAATATTAAAACA
TCTTTCGAGCAACTGTACCAGACGAGCCACTGCTTGCCAACTATTTCCAG
GCAAGCTGACTCAAATACAATGTTGAAAAAATGCCCAAGCATTTACAAGT
TGGATATGCTGTTCATGTAAAATCAGAAAAGAGGTACAAATAGGTAGGTT
ATTTGTGATGTCAGCCTCAACAAAAAAGATGTACATAGAAAAAGTTAGGA
AAAGCTGGTTGTTTAAAATTGTAAAATACCTACTTGAATGAGAGAATGCT
ATCCTAGGTATCAAAACAATTGGTAAAAATAAATTTTGTTTAATAAATTA
TGTAAATAGGCGTTTTCTATGGATGGTACTTTTGACATAGCAGACTCAGC
AAGGTTGACAAAGTCATTCCAAAGATCATTTAACGGAGTTGTCTTATTAC
AGGCCATTTTTCATGCCCTTTTAGCGTCTGGTTATCGGACGCTGCCCCTC
CTGAAATTACTAAAATATTGGTAAAAACAGCCTTTTTTGTGGAAAAACAC
TGAAAAAAGTGCCCTTTTTGACCACCAACGGACGCTGCTTTGCCTTTCTA
AAATATGGCCTGTATTATGTAGCTGACAAAGATTTGTAACATCAGATTTT
TTATATCAGGGATATTGGCATGATTCCATAGGTGGGCAGTTTTTTTTACT
GGGCGGCTATGTGGGTGAAATGCGATAACTATTCAATCATGGTCACTAGG
TCCAGCAGTGTCTTCCATTAATGAAATGAAGGATGGGTTGTTTTTTTAAA
TCAATTCAAGGATATTTTTCTTTCTGGTTGGAAAGGCAACTAAAATTGAG
AAAATACACAATGAAATAGCACACTATTCTAAAACACTATAGCGTCACTG
TGAATTTTTTTTCCTTTTACGATTCAGGTGCATCCGAAGAAGGTTGAACA
ACAAATTGACAAGTTTAAAATCCAAGAATTAAAGAAAAACTAGACAGAAA
AACAACCAACAACCATAATGGCTGACAATGATGAGGAAGAGCCTAAAAAG
AAAGGTAACGCTCTGCCACTGTGGGGTAACACACACTCTATGAACATCAA
CAATCTCATTGTCACTAATATCTTGGCCAGTCCCTACTTCAAGAATGAAC
TGTTCAAGTTAAAAACTTTTCATGAAGTGATTGATGAGATTTACTACAAG
GTCAGTTTGTTATTTTTTTCTTCTTCCAATAAATGCATTACTGCATCTTC
TCATCTCTTATTGGAAAGCAGGTACTGGAAAATGCAATTTATTAACAGGA
TGTTTCTTTTTATTATGCAAATAAATAAAGTGGTTAATACTTAATGTCCT
CGTACTTAACGCTCTTACTAAATCTTTCAATGATTTATGACAAATTATTT
TCCCATTCTTTTGGAAATGAACCTTGGAGCATATTCATGAAATAACTTTA
TAGCTTTTGAACAAATTCTAGTCCTGAATAAAAAAGGATTGATCTTTTCT
TCTCTCACTGAAATGATGTCTAATCCGTTGTTCTGTTCCTTTATTTCTCG
TGCAGGTTGAACATTTGGAGCCGTGGGAGCGTGGTAGTAGAAAGACACAT
GGTCAAGTCGGAATGTGTGGTGGTGTACGAGGTGTTGGTGCTGGAGGGAT
CGTATCTAGTGGTTTTTGTCTCCTATACAAACTCTTTACTCTTAAATTGA
CGGAGAAACAATTACTACAACTCATCAACCATAGAGATTCGCCATACATT
CGCGGTCTCGGATTCATGTTTATACGGTATTGTCAACACCCCAACACGTT
TTGGGACTGGTACGAGTCCTATCTTGAAGATGACGAGGAAGTAGATCCGA
AGGCAGGTACGCCATTTTTTTTCTCCATGTGTTTCTGTAGGAAAGAGCTA
AGCTTTTGTTTTTTTAGAAATACATGCTGATAAATTATAAGGGGACGGTA
GACAGTGAATCAAGTTTTAATATTGAATAGATCATGCTCTGTCTTTTTAA
ACGCCTTAGTTTTCTGTATAAATCTCTGGCAGGGTTTGAATTTATCAGTG
CTATATTAACTATTGTTTGTTACAATCGCTGGCTTTATGCTGACTATTCA
ATTTTTTTATTCATTTGTTATTTTCTCTTCCAAGTAACCAGTTTGATTTT
GGAAATGTCGTAAAACCGCGAAAAAGAAAGCAGAACATGTTGTTAAAACA
CAGTTCCAAGATTTTCCAAACTTGCTTAAAAATCGTATTTTACAAGATTC
CTCACACAGGGATTAAATCATTCTTCAAGTTTTCTTAAATACTGCTCACA
GTGGATTTCAAAGTTTTACTCACGTAAAACCTTATTTCTCGCAAAAAGCA
ACATGAGTTAGTTATGTTTTACCAGGACTACATGCAGTGCAGATTTCATT
TATTTTCATTTATTTAGGCCTTTTAAAATCTTCCCTGTGACGATTCTCAA
AAAGAAAAGCCATTTAAGTAACATTAACGAACCAAATAAAAAATCTTTTA
ATCATTTATTTTAACCTAAAAGTCTGCCAGGTCACTTTTTTCATGATGAG
GTTGTTTTGCTGTTGGCGTTACTCAAGGGTAACTAAAACTCAATTTCGCA
AAGGTTAGAATGCATTAAGCACAGTCAATATCAGTGTTAAAAAGTCGCTC
CGTTTCAGACGGTTTTCCGTCTCAGCAAAGTGTATAAAGAGAGGCTTTTC
TGTCTCAAAACTCTATAATTCACCAAAGTTCCAAGACTATTTTGCTTATT
GGCTGTGTAAAATCTATTTCCGTCTCCGACGAAAAACCTTGTTTTGACCA
TGCAACAGATTTCCATTTTTTGCTTTCCCCAGTAAGTCTGGGTACAGTTG
CTCAAAATTCACGGGAATAGTTTTTCGAACAGTCTTTTGAAACCTATGGT
GAATATTTCCGATATATACAGAAACTTTTTCCTCATTACCTTGCACGAAG
AAAACCCTCTTTTTTTGAAACAGTTTTGAAGTACAAAAGAATGAAGAAAG
AAGTAAAACGAGATTTGAGGTACCTCTTCTGATGTTCATTTTCTTTCGCC
AATAACTTATTTTGTTGTTAGAATAATGGACTTCAATATAATCCACGATA
ACCTATTATCTTCTCATCATGATGATTTTAATTATCTTTTCTAGGCGGAG
GCTCTCAGATGACAATCGGTCAAATGATTCGCAGTTTCCTATTGAAGCCG
GACTGGTACGGCACCTTATTCCCTCGTATACCGGTCCCCATTCATAAAGA
TATCAATGCACGCCTTCAAGAGATGAACTTGGATGACGAAAGGAAAGTGT
ATGCAAATGAAGGGGCGGATGAAGAGGGAGCTGAAGGGGGCTATGAAAAT
GAAGATGGCGCCAAAGGTTTGTCTTCTGTTATATTTCTTTACTTTACCTT
TTTGGTCATCAACAATTGTGTGTTGTTCATCTCTATCAATTGTTTGCTTT
CGTCCACATTCATCCTTATATGATACTCTTCAATGGGCAAACACTTTTTC
ACGCAAGTATTAAGCATAATTTTTTGAATTTTTAAGTATGTCTGCTTGAA
TTCATTTCCCTTCTTTCTTTATGATAGATGATGCTGAACATTCCCGACAA
GACGAAGGATCGTCAAGTAAATCACGTGACCGAAGCCGCGATCGTCGATC
TTCTAGTCGCCGAAGAAGTCGTTCTCGTGAACGTGAACGCAAGAGAAGTC
GATCGCGTGATCGAAAAAGAAGTCACAGTCGCGATCGTAAGAGAAGTCGG
AGTCGGGAACGTAGTCATGGACGTCATCGGGATCGTGACAGGGGCCATAG
CGATCGTGATTCACGCAAGAGAGATGGTGATAAAGATAGACATTCTCATA
AGAAACATTCACGTGACCGATCGCGAGATCGTGGTGGTCGTCGTGATGAG
AAACGAAGGAGTCGGAGTCGTGAAAGAAGCCGACGCTAACAAATTTTAAG
GAAAATGTGCATTGGGAATTCTGAACATTACTGTTGAATTGATCGAGAAC
CTCGCGAGAATAATCCACCTATAATTAGATATACTTGAAAAGTGATATAG
GCATAACTTGCTTTTTTTTTTGCTATCAAATACTGATACAGTAGTACATT
TGTTTCTATAGTGAAGTTTTATTGAGAAAATTAATCTCTTGCGAAGACTT
TCACTTTGTAAATATTTTAGCTAATAAAATTTTTAACCTTCTTAATCATT
TACCGACTCTAAATTCGTAAATACTCCTGAA

Coding sequence (CDS) from alignment at sc0000128:224525..235705-

>TCONS_00011485 ID=TCONS_00011485|Name=TCONS_00011485|organism=Clytia hemisphaerica|type=CDS|length=4272bp|location=Sequence derived from alignment at sc0000128:224525..235705- (Clytia hemisphaerica)
ATGATGCTGAACATTCCCGACAAGACGAAGGATCGTCAAGTAAATCACGT
GACCGAAGCCGCGATCGTCGATCTTCTAGTCGCCGAAGAAGTCGTTCTCG
TGAACGTGAACGCAAGAGAAGTCGATCGCGTGATCGAAAAAGAAGTCACA
GTCGCGATCGTAAGAGAAGTCGGAGTCGGGAACGTAGTCATGGACGTCAT
CGGGATCGTGACAGGGGCCATAGCGATCGTGATTCACGCAAGAGAGATGG
TGATAAAGATAGACATTCTCATAAGAAACATTCACGTGACCGATCGCGAG
ATCGTGGTGGTCGTCGTGATGAGAAACGAAGGAGTCGGAGTCGTGAAAGA
AGCCGACGCTAAGCGGAGGCTCTCAGATGACAATCGGTCAAATGATTCGC
AGTTTCCTATTGAAGCCGGACTGGTACGGCACCTTATTCCCTCGTATACC
GGTCCCCATTCATAAAGATATCAATGCACGCCTTCAAGAGATGAACTTGG
ATGACGAAAGGAAAGTGTATGCAAATGAAGGGGCGGATGAAGAGGGAGCT
GAAGGGGGCTATGAAAATGAAGATGGCGCCAAAGGTTGAACATTTGGAGC
CGTGGGAGCGTGGTAGTAGAAAGACACATGGTCAAGTCGGAATGTGTGGT
GGTGTACGAGGTGTTGGTGCTGGAGGGATCGTATCTAGTGGTTTTTGTCT
CCTATACAAACTCTTTACTCTTAAATTGACGGAGAAACAATTACTACAAC
TCATCAACCATAGAGATTCGCCATACATTCGCGGTCTCGGATTCATGTTT
ATACGGTATTGTCAACACCCCAACACGTTTTGGGACTGGTACGAGTCCTA
TCTTGAAGATGACGAGGAAGTAGATCCGAAGGCAGATGGCTGACAATGAT
GAGGAAGAGCCTAAAAAGAAAGGTAACGCTCTGCCACTGTGGGGTAACAC
ACACTCTATGAACATCAACAATCTCATTGTCACTAATATCTTGGCCAGTC
CCTACTTCAAGAATGAACTGTTCAAGTTAAAAACTTTTCATGAAGTGATT
GATGAGATTTACTACAAGATGATGCTGAACATTCCCGACAAGACGAAGGA
TCGTCAAGTAAATCACGTGACCGAAGCCGCGATCGTCGATCTTCTAGTCG
CCGAAGAAGTCGTTCTCGTGAACGTGAACGCAAGAGAAGTCGATCGCGTG
ATCGAAAAAGAAGTCACAGTCGCGATCGTAAGAGAAGTCGGAGTCGGGAA
CGTAGTCATGGACGTCATCGGGATCGTGACAGGGGCCATAGCGATCGTGA
TTCACGCAAGAGAGATGGTGATAAAGATAGACATTCTCATAAGAAACATT
CACGTGACCGATCGCGAGATCGTGGTGGTCGTCGTGATGAGAAACGAAGG
AGTCGGAGTCGTGAAAGAAGCCGACGCTAAGCGGAGGCTCTCAGATGACA
ATCGGTCAAATGATTCGCAGTTTCCTATTGAAGCCGGACTGGTACGGCAC
CTTATTCCCTCGTATACCGGTCCCCATTCATAAAGATATCAATGCACGCC
TTCAAGAGATGAACTTGGATGACGAAAGGAAAGTGTATGCAAATGAAGGG
GCGGATGAAGAGGGAGCTGAAGGGGGCTATGAAAATGAAGATGGCGCCAA
AGGTTGAACATTTGGAGCCGTGGGAGCGTGGTAGTAGAAAGACACATGGT
CAAGTCGGAATGTGTGGTGGTGTACGAGGTGTTGGTGCTGGAGGGATCGT
ATCTAGTGGTTTTTGTCTCCTATACAAACTCTTTACTCTTAAATTGACGG
AGAAACAATTACTACAACTCATCAACCATAGAGATTCGCCATACATTCGC
GGTCTCGGATTCATGTTTATACGGTATTGTCAACACCCCAACACGTTTTG
GGACTGGTACGAGTCCTATCTTGAAGATGACGAGGAAGTAGATCCGAAGG
CAGATGGCTGACAATGATGAGGAAGAGCCTAAAAAGAAAGGTAACGCTCT
GCCACTGTGGGGTAACACACACTCTATGAACATCAACAATCTCATTGTCA
CTAATATCTTGGCCAGTCCCTACTTCAAGAATGAACTGTTCAAGTTAAAA
ACTTTTCATGAAGTGATTGATGAGATTTACTACAAGATGATGCTGAACAT
TCCCGACAAGACGAAGGATCGTCAAGTAAATCACGTGACCGAAGCCGCGA
TCGTCGATCTTCTAGTCGCCGAAGAAGTCGTTCTCGTGAACGTGAACGCA
AGAGAAGTCGATCGCGTGATCGAAAAAGAAGTCACAGTCGCGATCGTAAG
AGAAGTCGGAGTCGGGAACGTAGTCATGGACGTCATCGGGATCGTGACAG
GGGCCATAGCGATCGTGATTCACGCAAGAGAGATGGTGATAAAGATAGAC
ATTCTCATAAGAAACATTCACGTGACCGATCGCGAGATCGTGGTGGTCGT
CGTGATGAGAAACGAAGGAGTCGGAGTCGTGAAAGAAGCCGACGCTAAGC
GGAGGCTCTCAGATGACAATCGGTCAAATGATTCGCAGTTTCCTATTGAA
GCCGGACTGGTACGGCACCTTATTCCCTCGTATACCGGTCCCCATTCATA
AAGATATCAATGCACGCCTTCAAGAGATGAACTTGGATGACGAAAGGAAA
GTGTATGCAAATGAAGGGGCGGATGAAGAGGGAGCTGAAGGGGGCTATGA
AAATGAAGATGGCGCCAAAGGTTGAACATTTGGAGCCGTGGGAGCGTGGT
AGTAGAAAGACACATGGTCAAGTCGGAATGTGTGGTGGTGTACGAGGTGT
TGGTGCTGGAGGGATCGTATCTAGTGGTTTTTGTCTCCTATACAAACTCT
TTACTCTTAAATTGACGGAGAAACAATTACTACAACTCATCAACCATAGA
GATTCGCCATACATTCGCGGTCTCGGATTCATGTTTATACGGTATTGTCA
ACACCCCAACACGTTTTGGGACTGGTACGAGTCCTATCTTGAAGATGACG
AGGAAGTAGATCCGAAGGCAGATGGCTGACAATGATGAGGAAGAGCCTAA
AAAGAAAGGTAACGCTCTGCCACTGTGGGGTAACACACACTCTATGAACA
TCAACAATCTCATTGTCACTAATATCTTGGCCAGTCCCTACTTCAAGAAT
GAACTGTTCAAGTTAAAAACTTTTCATGAAGTGATTGATGAGATTTACTA
CAAGATGATGCTGAACATTCCCGACAAGACGAAGGATCGTCAAGTAAATC
ACGTGACCGAAGCCGCGATCGTCGATCTTCTAGTCGCCGAAGAAGTCGTT
CTCGTGAACGTGAACGCAAGAGAAGTCGATCGCGTGATCGAAAAAGAAGT
CACAGTCGCGATCGTAAGAGAAGTCGGAGTCGGGAACGTAGTCATGGACG
TCATCGGGATCGTGACAGGGGCCATAGCGATCGTGATTCACGCAAGAGAG
ATGGTGATAAAGATAGACATTCTCATAAGAAACATTCACGTGACCGATCG
CGAGATCGTGGTGGTCGTCGTGATGAGAAACGAAGGAGTCGGAGTCGTGA
AAGAAGCCGACGCTAAGCGGAGGCTCTCAGATGACAATCGGTCAAATGAT
TCGCAGTTTCCTATTGAAGCCGGACTGGTACGGCACCTTATTCCCTCGTA
TACCGGTCCCCATTCATAAAGATATCAATGCACGCCTTCAAGAGATGAAC
TTGGATGACGAAAGGAAAGTGTATGCAAATGAAGGGGCGGATGAAGAGGG
AGCTGAAGGGGGCTATGAAAATGAAGATGGCGCCAAAGGTTGAACATTTG
GAGCCGTGGGAGCGTGGTAGTAGAAAGACACATGGTCAAGTCGGAATGTG
TGGTGGTGTACGAGGTGTTGGTGCTGGAGGGATCGTATCTAGTGGTTTTT
GTCTCCTATACAAACTCTTTACTCTTAAATTGACGGAGAAACAATTACTA
CAACTCATCAACCATAGAGATTCGCCATACATTCGCGGTCTCGGATTCAT
GTTTATACGGTATTGTCAACACCCCAACACGTTTTGGGACTGGTACGAGT
CCTATCTTGAAGATGACGAGGAAGTAGATCCGAAGGCAGATGGCTGACAA
TGATGAGGAAGAGCCTAAAAAGAAAGGTAACGCTCTGCCACTGTGGGGTA
ACACACACTCTATGAACATCAACAATCTCATTGTCACTAATATCTTGGCC
AGTCCCTACTTCAAGAATGAACTGTTCAAGTTAAAAACTTTTCATGAAGT
GATTGATGAGATTTACTACAAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_006433	XLOC_006433	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00011485-protein	TCONS_00011485-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000128	supercontig	sc0000128:224525..235705 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
41.1163	32.927	207.177	258.051	154.496	117.951	56.1417	57.8079	36.8352	40.6582	39.1646	33.0462	23.1969	25.1314	24.7366	33.4246	40.5199	36.2224	10.8757	12.1549	19.594	21.7981	37.439	30.9894	39.061	38.2386	18.4417	14.6696	26.1157	29.5954

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR005037	PRP38

Blast

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BLAST of TCONS_00011485 vs. Swiss-Prot (Human)
Match: PR38B (Pre-mRNA-splicing factor 38B OS=Homo sapiens GN=PRPF38B PE=1 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 6.974e-68
Identity = 131/193 (67.88%), Postives = 165/193 (85.49%), Query Frame = 3

Query:  231 KKGNALPLWGNTHSMNINNLIVTNILASPYFKNELFKLKTFHEVIDEIYYKVEHLEPWERGSRKTHXXXXXXXXXXXXXXXXXXXXXFCLLYXXXXXXXXXXXXXXXINHRDSPYIRGLGFMFIRYCQHPNTFWDWYESYLEDDEEVDPKAGGGSQMTIGQMIRSFLLKPDWYGTLFPRIPVPIHKDINARLQ 809
            K+GN LPLWGN  +MN+N +I+TNIL+SPYFK +L++LKT+HEV+DEIY+KV H+EPWE+GSRKT GQ GMCGGVRGVG GGIVS+ FCLLYKLFTLKLT KQ++ LI H DSPYIR LGFM+IRY Q P   WDW+ES+L+D+E++D KAGGG  MTIG+M+RSFL K +W+ TLFPRIPVP+ K+I+ +++
Sbjct:   42 KQGNVLPLWGNEKTMNLNPMILTNILSSPYFKVQLYELKTYHEVVDEIYFKVTHVEPWEKGSRKTAGQTGMCGGVRGVGTGGIVSTAFCLLYKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPPTDLWDWFESFLDDEEDLDVKAGGGCVMTIGEMLRSFLTKLEWFSTLFPRIPVPVQKNIDQQIK 234

The following BLAST results are available for this feature:

BLAST of TCONS_00011485 vs. Swiss-Prot (Human)

BLAST of TCONS_00011485 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
PR38B	6.974e-68	67.88	Pre-mRNA-splicing factor 38B OS=Homo sapiens GN=PR...	[more]

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TCONS_00011485 (transcript) - C. hemisphaerica