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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011479 ID=TCONS_00011479|Name=TCONS_00011479|organism=Clytia hemisphaerica|type=transcript|length=1573bpRun BLAST on NCBI protein sequence of TCONS_00011479-protein >TCONS_00011479-protein ID=TCONS_00011479-protein|Name=TCONS_00011479-protein|organism=Clytia hemisphaerica|type=polypeptide|length=524bp FQRADMKFIQYLVLVFCMCYTTTFDLTGKTVQLDVQDGKEGIVGNDFITSRun BLAST on NCBI transcript from alignment at sc0000128:204619..219752- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011479 ID=TCONS_00011479|Name=TCONS_00011479|organism=Clytia hemisphaerica|type=transcript|length=15134bp|location=Sequence derived from alignment at sc0000128:204619..219752- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000128:204619..219752- >TCONS_00011479 ID=TCONS_00011479|Name=TCONS_00011479|organism=Clytia hemisphaerica|type=CDS|length=22008bp|location=Sequence derived from alignment at sc0000128:204619..219752- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00011479 vs. Swiss-Prot (Human)
Match: TSP3 (Thrombospondin-3 OS=Homo sapiens GN=THBS3 PE=1 SV=1) HSP 1 Score: 174.481 bits (441), Expect = 2.936e-46 Identity = 99/271 (36.53%), Postives = 143/271 (52.77%), Query Frame = 1
Query: 739 ILTPLDKLNQALELLKEVKVNQGLQVSSIKLMKNTVKEIEQGNFGEGNRENGPLQQLIRNSLRFGRRNACSSNPCYYLVPCFKTNDEAGYQCGKCPLGMEGDGKTCRDINECS-LNPCSPLTTCQNRNPGYTCTQCPPGFQGNAIFGRGNDFAKNNKQTCVDVDECTQ-TPSVCPKHTFCNNTYGGYFCTSCESGYAFNKFGKCAQIRECQGEPRSAQNPCSEHATCSYELNDLKGGDIKACQCNFGYAGNGFECGKDSDFDGFPDEDLNC 1545
++T L NQ +L E++ + QV + L++NT+ E + F E +R+ CS NPC+ V C + + GY+CG CP G++G+G C DINEC+ +PC P ++C N PG+ C CP G++G + G G D+A+ +KQ C D+DEC C ++ C NT G + C C G+ N+ C R C A +PC HA C +E N +CQCN G+AGNG CG D+D DG+PD+ L C
Sbjct: 231 LVTQLTLFNQ---ILVELRDDIRDQVKEMSLIRNTIMECQVCGFHE-------------------QRSHCSPNPCFRGVDCMEVYEYPGYRCGPCPPGLQGNGTHCSDINECAHADPCFPGSSCINTMPGFHCEACPRGYKGTQVSGVGIDYARASKQVCNDIDECNDGNNGGCDPNSICTNTVGSFKCGPCRLGFLGNQSQGCLPARTCH---SPAHSPCHIHAHCLFERN-----GAVSCQCNVGWAGNGNVCGTDTDIDGYPDQALPC 471 The following BLAST results are available for this feature:
BLAST of TCONS_00011479 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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