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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011476 ID=TCONS_00011476|Name=TCONS_00011476|organism=Clytia hemisphaerica|type=transcript|length=1514bpRun BLAST on NCBI protein sequence of TCONS_00011476-protein >TCONS_00011476-protein ID=TCONS_00011476-protein|Name=TCONS_00011476-protein|organism=Clytia hemisphaerica|type=polypeptide|length=388bp VDQDGIGNVCDNCPSNANPLQRDIDGDSYGDFCDVDNDNDGVVNGFDNCPRun BLAST on NCBI transcript from alignment at sc0000128:189859..200909- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011476 ID=TCONS_00011476|Name=TCONS_00011476|organism=Clytia hemisphaerica|type=transcript|length=11051bp|location=Sequence derived from alignment at sc0000128:189859..200909- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000128:189859..200909- >TCONS_00011476 ID=TCONS_00011476|Name=TCONS_00011476|organism=Clytia hemisphaerica|type=CDS|length=14004bp|location=Sequence derived from alignment at sc0000128:189859..200909- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00011476 vs. Swiss-Prot (Human)
Match: TSP3 (Thrombospondin-3 OS=Homo sapiens GN=THBS3 PE=1 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 2.227e-24 Identity = 148/428 (34.58%), Postives = 218/428 (50.93%), Query Frame = 1
Query: 4 DQDGIGNVCDNCPSNANPLQRDIDGDSYXXXXXXXXXXXXXXXXXXXXPFVKNEQQWXXXXXXXXXLCDNCPSVPNNDQLDVDLNGVGDVCDNQNDRDYDGIADGRDNCPYFPNAAQVXXXXXXXXXXXXXXXXXXXFVDQA----DNCPLMHNLLQFDIDDNQXXXXXXXXXXXXXXXXXXXXXPLNNAIWRTSFLKHRTILLNNPREPANL--LWKIHDKGQEVELNSYINGSVVLLGDDLYEGFDFNGVIHI--------------LQQEG-------KVMNTFYEVGIAFDXXXXXXXXXXXXXNINGLKRVAVYVSRNNGRNPANEKVLKWSSP--FDWQPGSSYNLKIHRRPLTNQLRIQVKGVDGGATV-DSGVLEVDQQKGGKIGLYATYTKNVIWSSLTIECNESKIE*KKTLEEESLQ 1197
D D G+ CDNCP+ N Q+D DG+ GD CD D D DG+ NG DNCP V N Q D D DG+GD CD+CP + N Q D D + VGDVCD D D DG D +DNCP PN++Q+D+D D +GD CD DDDNDG D DNC L+ N Q D D N GDVCE D+D+D +D CP + + T F ++T++L +P A + W + ++G E+ + + + + +G + G DF G H+ Q G K Y F + L ++ +++G + G P ++L W+ P W+ +SY ++ RP +R+++ +G V DSGV+ +GG++G++ +N+IWS+L CN++ E + + LQ
Sbjct: 531 DTDSFGDACDNCPNVPNNDQKDTDGNGEGDACDNDVDGDGIPNGLDNCPKVPNPLQTDRDEDGVGDACDSCPEMSNPTQTDADSDLVGDVCDTNEDSDGDGHQDTKDNCPQLPNSSQLDSDNDGLGDECDGDDDNDGIPDYVPPGPDNCRLVPNPNQKDSDGNGVGDVCEDDFDNDAVVDPLDVCPESAEVTLTDFRAYQTVVL-DPEGDAQIDPNWVVLNQGMEI-VQTMNSDPGLAVGYTAFNGVDFEGTFHVNTVTDDDYAGFLFSYQDSGRFYVVMWKQTEQTYWQATPFRAVAQPGLQLKAVTSVSGPGEHLRNALWHTGHTPDQVRLL-WTDPRNVGWRDKTSYRWQLLHRPQVGYIRVKL--YEGPQLVADSGVIIDTSMRGGRLGVFCFSQENIIWSNLQYRCNDTVPEDFEPFRRQLLQ 953 The following BLAST results are available for this feature:
BLAST of TCONS_00011476 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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