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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011469 ID=TCONS_00011469|Name=TCONS_00011469|organism=Clytia hemisphaerica|type=transcript|length=1183bp
TGTCAAATGAACACCACGTAAACAGATCCACGAATCAATATGTTGCACAA
GAAGAGTTTGATGGATTTACTCAAGATCTCCAGCCTTATCATCATAACCC
ACCTCTATATTTCAATATGTGCTTTCGCCTAcacaaaatttgaaacaaac
cAAAGTGAACTTGGAGAAAATATTGATCAATTTCTCATGCAGTTGAAAGA
TGGGCGATTCTCAAATCAAGATGGAATCGaggttttaaaaaaatacaaag
ataTTCGTCACAAGGAAAGAGCTTGGCGTCAAAAGGAATGGTTTTCCAGC
TACCCCAAAACCTTTGTTTACGTCTTAGCAGCTCACTCCACTTTAGgaaa
tcgtCATATGAATGTCAAAACATTGAACGGTCAACTTTTTTATGTCTTAA
CCGTCCCACTTGGTGTTCTCCTCTACTACATCATGATTCACGTGGTAGCT
AGCCGGTTGGTCATCATACTCAAAAATGCGTGTATGTTAGTCTGGAGGCG
CGAAGATGACGAAATGTCGGACACGGAACGAGACTTGTTCGTACGCGTCA
AATTGTGTTACACTGCGTTGCTGACCACTCTCGTTACCATTCTCCTACTT
GGAACAATATCAATCGCATTCGAACGTCCTTTCGTCACAGAAATTATGTA
CATTATTGATGTTATTTACACAATTTCAtcatctgaaaatttcatttttt
acgattttgcTCACGACGATGTTAACGCTTCAATAACCACTTTAGTTTAC
TTCGTTTTAATCACCTTGGCATATACAACAAGCTCAAGTATCATATCTTT
GTTTTGGTATCATAAATGTGACGATATTTTGGCTTACTTCCTTGGAAAAT
GGGTCTACAAATATCTTCAAGTAGAGGAAGGTGCAACATCAAAAGGTGTT
TATGATGATTACCGACCCATTTCGATGAGTGATGAGACACCAGAATTGAA
GGACTTGCCAAATCTATTGGAAAATAATATGAATTGGACTAAAAGAGATG
AAAAGTCTGAAAATGAAAAGCAATAATGTTGAATGATTAATACACAGTAA
ACTCTCGCTTATGCGAACGTCTATTATTccaatttttctataattcgaac
ttgtttctaGTCCCCGTCACTAGACTAGTCCCCGTCAACCCTGTTAAAGT
CCTTTCTAAGTAAGATTCAAACTTCACTGCAAT Run BLAST on NCBI protein sequence of TCONS_00011469-protein >TCONS_00011469-protein ID=TCONS_00011469-protein|Name=TCONS_00011469-protein|organism=Clytia hemisphaerica|type=polypeptide|length=328bp
MLHKKSLMDLLKISSLIIITHLYISICAFAYTKFETNQSELGENIDQFLM
QLKDGRFSNQDGIEVLKKYKDIRHKERAWRQKEWFSSYPKTFVYVLAAHS
TLGNRHMNVKTLNGQLFYVLTVPLGVLLYYIMIHVVASRLVIILKNACML
VWRREDDEMSDTERDLFVRVKLCYTALLTTLVTILLLGTISIAFERPFVT
EIMYIIDVIYTISSSENFIFYDFAHDDVNASITTLVYFVLITLAYTTSSS
IISLFWYHKCDDILAYFLGKWVYKYLQVEEGATSKGVYDDYRPISMSDET
PELKDLPNLLENNMNWTKRDEKSENEKQ Run BLAST on NCBI transcript from alignment at sc0000128:116948..118589- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011469 ID=TCONS_00011469|Name=TCONS_00011469|organism=Clytia hemisphaerica|type=transcript|length=1642bp|location=Sequence derived from alignment at sc0000128:116948..118589- (Clytia hemisphaerica)
TGTCAAATGAACACCACGTAAACAGATCCACGAATCAATATGTTGCACAA
GAAGAGTTTGATGGATTTACTCAAGATCTCCAGCCTTATCATCATAACCC
ACCTCTATATTTCAATATGTGCTTTCGCCTACACAAAATTTGAAACAAAC
CAAAGTGAACTTGGAGAAAATATTGATCAATTTCTCATGCAGTTGAAAGA
TGGGCGATTCTCAAATCAAGATGGAATCGAGGTTTTAAAAAAATACAAAG
ATATTCGTCACAAGGAAAGAGCTTGGCGTCAAAAGGAATGGTTTTCCAGC
TACCCCAAAACCTTTGTTTACGTCTTAGCAGCTCACTCCACTTTAGGTAA
ATCTATTAAAACCTGATATTATTTTTTTCATATCATACCATATCACACAT
CAACAATCCGCCTTTTTCATAATACTGTGAATTGAAAGAATTAAGGCTTG
AAGAACGATCCACTCTTTAAAGATCCATTGCCTTTAAAAGCAAGCAGAGT
AATTTTATAGTCATTGCACGAGAGCATTAAGTCCGTTCACACCTGTATGT
CGTCTAGAATCACCAATCGTGCTAGCGAGCTAATGTATCTGTGTTTTTTT
TTTGCGACGGAGACGGTTAGCTTCTGATTTGTCTACATCCTGACTGACTG
AGGACGACTGTAAATCGGATTTCTTACCGTCCTCGATTTCGCGGGTCAGA
ACTACAGACTACTCCACTGTCCTCAAAAGTGCCAACAAATACATACACCT
CACCATTGCACCGTCTGAAACTTAACTAGCCTGAATTTCTAATTAATTTT
TTCAGGAAATCGTCATATGAATGTCAAAACATTGAACGGTCAACTTTTTT
ATGTCTTAACCGTCCCACTTGGTGTTCTCCTCTACTACATCATGATTCAC
GTGGTAGCTAGCCGGTTGGTCATCATACTCAAAAATGCGTGTATGTTAGT
CTGGAGGCGCGAAGATGACGAAATGTCGGACACGGAACGAGACTTGTTCG
TACGCGTCAAATTGTGTTACACTGCGTTGCTGACCACTCTCGTTACCATT
CTCCTACTTGGAACAATATCAATCGCATTCGAACGTCCTTTCGTCACAGA
AATTATGTACATTATTGATGTTATTTACACAATTTCATCATCTGAAAATT
TCATTTTTTACGATTTTGCTCACGACGATGTTAACGCTTCAATAACCACT
TTAGTTTACTTCGTTTTAATCACCTTGGCATATACAACAAGCTCAAGTAT
CATATCTTTGTTTTGGTATCATAAATGTGACGATATTTTGGCTTACTTCC
TTGGAAAATGGGTCTACAAATATCTTCAAGTAGAGGAAGGTGCAACATCA
AAAGGTGTTTATGATGATTACCGACCCATTTCGATGAGTGATGAGACACC
AGAATTGAAGGACTTGCCAAATCTATTGGAAAATAATATGAATTGGACTA
AAAGAGATGAAAAGTCTGAAAATGAAAAGCAATAATGTTGAATGATTAAT
ACACAGTAAACTCTCGCTTATGCGAACGTCTATTATTCCAATTTTTCTAT
AATTCGAACTTGTTTCTAGTCCCCGTCACTAGACTAGTCCCCGTCAACCC
TGTTAAAGTCCTTTCTAAGTAAGATTCAAACTTCACTGCAAT Coding sequence (CDS) from alignment at sc0000128:116948..118589- >TCONS_00011469 ID=TCONS_00011469|Name=TCONS_00011469|organism=Clytia hemisphaerica|type=CDS|length=1974bp|location=Sequence derived from alignment at sc0000128:116948..118589- (Clytia hemisphaerica)
GAAATCGTCATATGAATGTCAAAACATTGAACGGTCAACTTTTTTATGTC
TTAACCGTCCCACTTGGTGTTCTCCTCTACTACATCATGATTCACGTGGT
AGCTAGCCGGTTGGTCATCATACTCAAAAATGCGTGTATGTTAGTCTGGA
GGCGCGAAGATGACGAAATGTCGGACACGGAACGAGACTTGTTCGTACGC
GTCAAATTGTGTTACACTGCGTTGCTGACCACTCTCGTTACCATTCTCCT
ACTTGGAACAATATCAATCGCATTCGAACGTCCTTTCGTCACAGAAATTA
TGTACATTATTGATGTTATTTACACAATTTCATCATCTGAAAATTTCATT
TTTTACGATTTTGCTCACGACGATGTTAACGCTTCAATAACCACTTTAGT
TTACTTCGTTTTAATCACCTTGGCATATACAACAAGCTCAAGTATCATAT
CTTTGTTTTGGTATCATAAATGTGACGATATTTTGGCTTACTTCCTTGGA
AAATGGGTCTACAAATATCTTCAAGTAGAGGAAGGTGCAACATCAAAAGG
TGTTTATGATGATTACCGACCCATTTCGATGAGTGATGAGACACCAGAAT
TGAAGGACTTGCCAAATCTATTGGAAAATAATATGAATTGGACTAAAAGA
GATGAAAAGTCTGAAAATGAAAAGCAATAAATGTTGCACAAGAAGAGTTT
GATGGATTTACTCAAGATCTCCAGCCTTATCATCATAACCCACCTCTATA
TTTCAATATGTGCTTTCGCCTACACAAAATTTGAAACAAACCAAAGTGAA
CTTGGAGAAAATATTGATCAATTTCTCATGCAGTTGAAAGATGGGCGATT
CTCAAATCAAGATGGAATCGAGGTTTTAAAAAAATACAAAGATATTCGTC
ACAAGGAAAGAGCTTGGCGTCAAAAGGAATGGTTTTCCAGCTACCCCAAA
ACCTTTGTTTACGTCTTAGCAGCTCACTCCACTTTAGGAAATCGTCATAT
GAATGTCAAAACATTGAACGGTCAACTTTTTTATGTCTTAACCGTCCCAC
TTGGTGTTCTCCTCTACTACATCATGATTCACGTGGTAGCTAGCCGGTTG
GTCATCATACTCAAAAATGCGTGTATGTTAGTCTGGAGGCGCGAAGATGA
CGAAATGTCGGACACGGAACGAGACTTGTTCGTACGCGTCAAATTGTGTT
ACACTGCGTTGCTGACCACTCTCGTTACCATTCTCCTACTTGGAACAATA
TCAATCGCATTCGAACGTCCTTTCGTCACAGAAATTATGTACATTATTGA
TGTTATTTACACAATTTCATCATCTGAAAATTTCATTTTTTACGATTTTG
CTCACGACGATGTTAACGCTTCAATAACCACTTTAGTTTACTTCGTTTTA
ATCACCTTGGCATATACAACAAGCTCAAGTATCATATCTTTGTTTTGGTA
TCATAAATGTGACGATATTTTGGCTTACTTCCTTGGAAAATGGGTCTACA
AATATCTTCAAGTAGAGGAAGGTGCAACATCAAAAGGTGTTTATGATGAT
TACCGACCCATTTCGATGAGTGATGAGACACCAGAATTGAAGGACTTGCC
AAATCTATTGGAAAATAATATGAATTGGACTAAAAGAGATGAAAAGTCTG
AAAATGAAAAGCAATAAATGTTGCACAAGAAGAGTTTGATGGATTTACTC
AAGATCTCCAGCCTTATCATCATAACCCACCTCTATATTTCAATATGTGC
TTTCGCCTACACAAAATTTGAAACAAACCAAAGTGAACTTGGAGAAAATA
TTGATCAATTTCTCATGCAGTTGAAAGATGGGCGATTCTCAAATCAAGAT
GGAATCGAGGTTTTAAAAAAATACAAAGATATTCGTCACAAGGAAAGAGC
TTGGCGTCAAAAGGAATGGTTTTCCAGCTACCCCAAAACCTTTGTTTACG
TCTTAGCAGCTCACTCCACTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011469-exon-sc0000128-1575043694:118244..118589 | TCONS_00011469-exon-sc0000128-1575043694:118244..118589 | Clytia hemisphaerica | exon |
| TCONS_00011469-exon-sc0000128-1575043694:116948..117784 | TCONS_00011469-exon-sc0000128-1575043694:116948..117784 | Clytia hemisphaerica | exon |
| TCONS_00011469-exon-sc0000128-1510915933:118244..118589 | TCONS_00011469-exon-sc0000128-1510915933:118244..118589 | Clytia hemisphaerica | exon |
| TCONS_00011469-exon-sc0000128-1510915933:116948..117784 | TCONS_00011469-exon-sc0000128-1510915933:116948..117784 | Clytia hemisphaerica | exon |
| TCONS_00011469-exon-sc0000128-1491911889:118244..118589 | TCONS_00011469-exon-sc0000128-1491911889:118244..118589 | Clytia hemisphaerica | exon |
| TCONS_00011469-exon-sc0000128-1491911889:116948..117784 | TCONS_00011469-exon-sc0000128-1491911889:116948..117784 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000128 | supercontig | sc0000128:116948..118589 - |
Blast
The following BLAST results are available for this feature:
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