TCONS_00011467 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011467
Unique NameTCONS_00011467
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1264

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011467 ID=TCONS_00011467|Name=TCONS_00011467|organism=Clytia hemisphaerica|type=transcript|length=1264bp
ATGGACAAAACGATCAATTCACAGAGCAGTACCACAAGCGATACAGCAAC
AGCTATGAATACCATGTTGTTTGTGCAAGGACAAGAATTCGCTGTTGTTG
GGACATtgttaattttgatgaagatcaTTGCGGAATATTGTCAATGCATT
GATGACGTACCAATGTTGGTCACTGACGTCATGACACGTTTGTGCGAATT
ACTCAAAatattcaatTCGCGCGCATGTCAGTTAGTGTTGGGCGCAGGCG
CCTTACAGACAGTTGGCTTGAAGACCATCACGGCGAAACACTTGATGCTC
GTTGCGCAATGTTTACAAGTTGTGATACTAAACATCAATACAATCAAAAA
TCACTTCGAATTGAGGCTGACACCCAAACAATACGTCATGTTAACGCAAT
TTGATCAAATATTAAAGgATTACAACAATCACAGACACGAACTATTATGT
AAAATAACCAATCTGATGGAGGAAATATTCAATTCGTATTTATCACAGTA
CGAATTAAAACCACCGATGCCTTCGAAAACCATGCGTAATATTGTGGCGC
AAGTCAAGAAGTTGCGTGAAACAATGGCCGCCATTTTGTCCGAACAACAA
CTTGAAGTCCTGTTTCGTGACGTCAGAAGAAAATTTAAAGACTGTCTTGC
GTCGAAGCTAGCGGATTTTGGTGTATCAAATGATGGAGGGCCTCAGCACG
GATTGGTTACTTCAGATGTCATTTTTTACTCGACCAGTTTGAATAAGTTG
ACGGGTTTCAAAGACTTGGATCATAAATGTGACGGACTTTGGAATTCAAT
CAATGAGCTTAAAAAAACTCGCAAAAAACATGAACAACATTCATCGAAAA
GTCAGCAGCGGGCTTCATCAGCAAAAACGAAAAGTAACAGGTGATGTCAG
TAGATCCTTTTTAAtggttatgtttttttttgtaaaatacagaacttttt
ttataattttagacTGTTTCTCGAGTCCCCATTCAGTCCATTCCGTGACC
TCTTTTTTGAGGGCAAACTTTTCAAATCTGTAGCGAGAGAGTAGATTTTT
ATAggcatacacgctttttttataagaatatcttatataagaatatcagg
gtgaaaattggccaaatcgtaagaataccctaagaataccctctagggtg
agtttcacagaatttgataaaaatacagtcattttgtatttggttaacag
aaaaactgcttcctttgttagacttgaatttaaacttgtggagaaatgta
attttagctcAAAA
Run BLAST on NCBI

protein sequence of TCONS_00011467-protein

>TCONS_00011467-protein ID=TCONS_00011467-protein|Name=TCONS_00011467-protein|organism=Clytia hemisphaerica|type=polypeptide|length=297bp
MDKTINSQSSTTSDTATAMNTMLFVQGQEFAVVGTLLILMKIIAEYCQCI
DDVPMLVTDVMTRLCELLKIFNSRACQLVLGAGALQTVGLKTITAKHLML
VAQCLQVVILNINTIKNHFELRLTPKQYVMLTQFDQILKDYNNHRHELLC
KITNLMEEIFNSYLSQYELKPPMPSKTMRNIVAQVKKLRETMAAILSEQQ
LEVLFRDVRRKFKDCLASKLADFGVSNDGGPQHGLVTSDVIFYSTSLNKL
TGFKDLDHKCDGLWNSINELKKTRKKHEQHSSKSQQRASSAKTKSNR
Run BLAST on NCBI

transcript from alignment at sc0000128:14115..21979-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011467 ID=TCONS_00011467|Name=TCONS_00011467|organism=Clytia hemisphaerica|type=transcript|length=7865bp|location=Sequence derived from alignment at sc0000128:14115..21979- (Clytia hemisphaerica)
ATGGACAAAACGATCAATTCACAGAGCAGTACCACAAGCGATACAGCAAC AGCTATGAATACCATGTTGTTTGTGCAAGGACAAGAATTCGCTGTTGTTG GGTAAGTTGTCTACTTGAGTGTTTTTAACGGACGGAGATCAACAATATTA TAGATTTAATCACAGTCCATTCTCAACTCAAAGGCAATTTTTATGAGTGA CCCAATTGATTAATTTTGTTGTTTTGATCTCAGCAACTTTTATTAGCCAT TCTATTCCGGCTTACGCTTAAACAGTTTAAAGTTTTCATATTTGACAGAT TTTTTGATGTGAAAATGGTAGCTGAAATTTATAATGACAACAGGGGAATG TAAATCAAATAGTAGAATTCATATTGTGTGGGTGGCTCACTTTTTTGTCG AAATTTGAAAATGAGCAAAGGATATTTTGTGAGGTTAAGTACCGTGGATT ATTCACGAACACGAACGGGAAATATTAAAGGCTTTTTTAAATTCAAAAAT TGATTGGTTGAACTACACTAGTGTCTTTCATGTTCCATTCGCGCATGAAT TATCTACGGTACTAAACCTCACTAATGGTATGCGAGATACGAGCGGGATT TTTGGAAAAGCCTTTTAAATTTATATTTTAGCGATTGGTTTATGGGGTTT AAGGAAGCTATCAATGGCTAGATTTAAGCATTGATTGGCTGGTAGATTTA TATTATTGCTTATTTATTTAACGAACAGCTTTAGTAGTCGAAGGTTAAAA CAAATCAATTTGAAAACAAATTCTGATGTTGTTAAATGCGGTTGTGCGCA GGGCAGATAGACGTGAACGGATCTTATTTATCACTCTCTTATATTATGTT TTAGGACATTGTTAATTTTGATGAAGATCATTGCGGAATATTGTCAATGC ATTGATGACGTACCAATGTTGGTCACTGACGTCATGACACGTTTGTGCGA ATTACTCAAAGTAGGTCTATTTCTCCTTCATAGCTATGCTAATTTAACGA GCAGTACAATTCTTATGTTTATCTCAGATCAAGACTTCAAAATCAAAAAT TTAAGACTTTAAAAGATTTAGAAAACACGAATTACATGTGTTGCCAGTCG ACTTGTGCATCAATGCCGAAAACGGCGTTGGTCAGCTTTTTGGCACGAAA AGTGATGAAATACAGCATTTGTCTGGGAAATTAAACAGTGTTGTATTTTT TTTTAATTTGATTATGTTATATATCCAAGCAGTGACTTACGGGATTAGTA GTTTTATGAATCGGCTTAGGCATTAGCTATATAGTTGATTTCTACTTGCA AAGCTTTCGCTACCACAAAGCAAGGCAGTCCAAGATCTCACTCGTCAAAA TTCTGTTGATGTTCTCCGATTCGATTTTCAAGGGGAATTGGATCTTCATC GAAGAAGGGAGCCTATTTAGGAGAATTTCTTGTTGATGGCAACTTTTAAT ATTATCGAATAACGGAGCGTATTGTGTCAAGTGTCAACTGTAAGTTTTTA CAACAAAACTGCAGGATGTGGTCCTTATTATTCAATTCACTCATTTCGCC TTCTCTTTTTTTTAGATATTCAATTCGCGCGCATGTCAGTTAGTGTTGGG CGCAGGCGCCTTACAGACAGTTGGCTTGAAGACCATCACGGCGAAACACT TGATGCTCGTTGCGCAATGTTTACAAGTTGTGATACTAAACATCAATACA ATCAAAAATCACTTCGAATTGAGGCTGACACCCAAACAATACGTCATGTT AACGCAATTTGATCAAATATTAAAGGTATTTTTAAACTTCAGTTGCTAGC TAGAGTGTGAAAATGGTTGTTAGTCTGCCTGTCTGTTTATATGTGTCCCT CTTCAACTTTTAACTTCAAATTAAATATTTAGGGACTGAGACGAAATTTT TTTCCACAAGATTTCAAGTGTCGGATATCTTGAAAAATATATTTTTTTAA TTAAGATTGTTTAAAAAAAAGAAGTTTAATACAAGAATTATATAGTCAAA AGGATAATCTGATGGCTTAAGTAAAGATCTTCGGCATGAAAGTCCGAAGT TTTTTGTCCTGGGCGAAACCTCAAAAAACGATTTCTTAAGTTTATATAGC AAAGGTAAAATTTATTTGAAGAAATAGCAAGGTAAGCTAGACAGAGATTT CAGTAGGTTAAGGATCTCAAATTACCCTCAGATCATCCCTCAAGTTTTAT GTTATCTTATATTGAATCATCAAAATAAAAAATAACCCGTTTTTAAGAAC TGAAGAAAACAATATGTGAACCTTAGATAAATCCTCCAATCTTTGGATTT TATTGTCCATTTTAAAAGTAGTCACAGCCAATTTTACATTCGTCGACGGT TGGAAAGGTTGAGCAACCTTCTCTTGAGCATGCGACGCACAAATTGAATG TGTACCCCTCGACCTTCGGAAAGCAGCCAGATTGCCCGTTGCGCTCACAT TTCGTTCGGCAGCTACCGACAGTGACTCCAAGGTGTCGCATTTTACACGC ATGCGTACACGAAAACATTTGATTACATCCTTTTTGAAGGCTTGTATCTG ATGCGCATGCGAATTCACTGCACGCATTTAAACATCCTGCCAAACGTTTA TCTACAAGTGAAATGCAAACATTATGTAATGGTTCGAATGAGATGCAAAT GGATCCTTATTATTCATTAAGCAATCGAATTTTAATTAGTTCTATTAATC AAAGAATCAAAAAGGTAAAATATAGTTTACACAAATAATAATAATAGGTT CGGGTTAACCCAGATATCGGGAATTATCGTTTGGCGATAGTTTAAATCTC AAAAATAGATCTTCACTTGAGTTTTAATGCGGTAAATTGTGCCTTTAAAT ACTTTCAAAGTCAGGTAATTATAGACCTTATCTATTTAGAACCAAATAAG AGACTCTTCTTTTGACAGCTGAAAATATTTTCAAATTTTGATAAACGGGA GGGGACTTATTACCTGGGGGTTGGAAATTGTACTTCAAAATAAGGTAATT ATAGACTAAAATTTAGCTATTTAGAGCAAAATAAGGGACTTTTCTTTTGA TAGCTGAAAATATAAATAAACGTGAAAGGGGGTCCTTAAATGGTCCGGGG TGTGGAAGAAATCAAAAAACTAACAAGCGTAGGGCGTTTATTAGGCACAC GGTAGGATAGGATGTACGTAGCCTTACCTTCTTGTGCTTGAGCACTGCAG CTGGATGGACAAGCCTTATTCATGAATGAAGGGTTTTTGGTGCATTCTCC ACGTCTTGCCCAATAACTGCATGACCAACGTTTATCACCATGAAAGCCTG CCATAAAAAGAATGGTATTTATAGAAGTCTGATTTTAAAGCCGTTAATTT CCAAGCTACTGCAAACGACTCTCTAAAAGTAAACATACAATTAAAGCTTT TCAGGGCCAAAGGATTTGTTCTTTTCACATTCATCATGTGATTTTTAAGG TGTGACAGGAACCTATTGTAACAAACCTAGCTTAAATCAACTGATATCAA GCAAGTCTTCTTGACTTAAAAAAGTAACACTTTGTGGGAACGCTCCTTAT ACAGTCGAGTCTCCATAACTCGAACACGGGCGGGAAACAGAAATTTGTTT GAATTAAGGAAATTATTGAGTATTATGGAGTTATGAAGTAAGGCTTATAA GGTTAACTGATGGGGCAAGAAAACTTGTTCGAGTTAAGGAGGTTCGAAGT AAAGAGATTCTACTGCAATAACAACGAGATAATATTAGTAGCGTATGTAC TTACAGACGTCACAGGCAGGAGCACAGCTGACAATCATGTAGGCTGGGTT TTCATGGCATTCACCTCTTTTGGCCCAACTATCGCAATTATCGTTCGTGT TCTTGCAGTTTATGTCGTTGCTGATGACCGCTCCACGTGCACTGTGAACT GTAAACAAAATGTCAAGATTCAAAGTTAAAATCTTTCCATCCCGGTGCTA CTTAAATGTGATTTTTATTTCGTTACGCTTAAGATTAACTTAATCTTTCC CTCTATACCGGAGAAATTCACATCATCCCAAATTGATGCACGGGTTTAAA GTTTGAACCATCTTTTGTATTCAAATGTCGAGAAAAAGTAAAATGTTACC TGCTACTACAGCAATGCAAATGAGTGTTGTCAATCCCTTCATTTTGTTTT GTGTGTGTTTTGTGTGTTTTTCTTCTTGTCAAGTCAATGGCTTCTTTTGC TTTGAATGATTTCTCAGTGGTCCTTGTCCTTATTTATAGTCTTTTCTACA GACCATTTTCTTCCTTTTTCGCCTATTCTTTCTTTTCGAAACTGAGAGGA TGATTTTTTAATTTGCGTAATTTTATAGCTACTAATATTTCATTTTTTTA ATTACAGGAAACTCATTAAAACGAATTCATAACTATATCGTATCGTATTT TCGAATAGGTAATCTTAGACCACGGTCACATTCGCTCCGAAACGAATGAA GTCATTCCATTGGTTAAACTCAAGTTTTACGTCACTTCTAACCAATGGAA TGACTTAATTTCGTTTCGGAGCGAAACGGAACCGTAGTGTAGAAACGTGG TCTTGTACTATAACTTATTTTATGGAAGCCCTAAGTATGCCGTCCAACCT AGAGTTCTTTCTTGTAAGATTTACAGATCGAGATCAAAAGTCCCTTGAGC TGTTTTTAAAGATTTTAAGAACAATAAATCTTTCCTGTCTAGAAATATTC CAATGTTCTGGTGATAAAGTTCTTTTTTTTTTTTTTTTTTTTTTGCAATA CATTAAAATAGTAAGATGCAATAACGATTACTTAGGACCTGAATACACAG GTTGCAAAAGTCTGAAGACAAATCACGCTTTTTACTAGAAATTTTTATGT GCTTGTTGTTATGTTACATGAGATTTATTTTTGATTGATTCGAATGTATT GCCACTAAAAAAGTTATCAGCTGTTGAGTTGTAAAGCAAGTAACATGGAA ATAGAATCGGGTGAACTTTTTCGAGTAATCACATGTTTTGATTGCATTGA TATAATTTTGCAATCTGTGTATTCTCACTTAACGTATCCGATCATGACAA GTGGCAGAGCTTGATAAAAAAATGTACAGTATTAGACTAGATAGACACCT GACATTGCAAGCTCTTTACAAGTACAATACTATGGTTGAAAAATAGAAGC TCAAAGTCAGGTCTTAGTCAAAAAAGCCATAATTTCACCTTTATATGGTA ATGTACAATGGACTCTCGGTTAATCAAAGTAAATCGACTTTCCCCGTTTT ATCCTCTTTTTAAGTGGTTTCTTATTCCCGTGGATAAGAGGCTATTTTCT TCCAGTTATTCGAAGTCTAACAGTTTTATAAGTTATGGGGTATCAACTGG TTGAAATCCCCATGATATTCCAAAGACAAAGAGAGAATGAGGCTAAGACA GCCAGTTAAGTATTTGATTTGATTTTTATTTGATTTGGAAGGTCGTTGGA CTAAAATCGAACGTGCACAACACACACTGGGCTAGAATTCATCCAACTTT ATGGAGATTAAATTGGAGTAAAAATTGAAAACTTGTTTCAGGCTACAAAT ATTGCATTTTTTGAAAAGTATGGAACGTGTGCAAAAATTTAGCCACTTCC AACCATTTTCGACTGCTGCTCAAAAGATTTTAGCCTCATTTTGGCGAAAC TTGTACCAAAGTCCCAAAATTTAAATTTTGAAGAAAAAAAACGCTTCCAG GGGTTTGCTAAAGATAAATTGTACGACAAATCATTTTTTAAGTCTGCCCA AAGACTTGCTCTAAGTTTATTATACCATTTACATGGAGTTAATCTGAACT AGACAAAGATAGTGGTCAATATTGGGCTGATCCATTAAAAAAAAAGGTAA AATTTCCAAAAAAACCCTTGGAAAAGTTCTTTTCATACTTAAAAGTGAGG GTGGACGAACTAGAATCAGTCTTTTACCTACTAGAAATTTTAGAATAACT TTTTACCCCCTTGGAAAAATGAAAACACACCCCCTTTTCTCAGATTATGA TATGAAATGTTCGTCCACCCCCTGTATAGATATAAAATGNACTGTGTTCG AATCGCAAGCTCTTCCAAGCAGGGTCTTAGGGAAATATGGTGATAGACTC TCTACCTTCAATCACAATTGACGCTCTCTAATTTAACGTTCAAATATTCC ATCCCCTCCATTATTCGATAATATTGAAAGTCACCGTCAACAAGAAACTC TCATAAACGACGCACTTCTATTTGATACGTTTCCTTATTCAATGAAAATT GAATTCCCCTTGAAAATCGAATTAAAGAGCGTCAAATGTACTATGGTGTC TACGGGACCATGAAAACCTCGAAAAAGAACCATCCAATCTTGAAAATTTA CTAATAGATGTTGTGGAAGAAAATCCACCTTGAAAATGGAGAAAAATATT CATGGACTTCCTACTACTAGATGCTAAAAGAAGGAATATTTTATATTTTA TATTTTATATAGGATTACAACAATCACAGACACGAACTATTATGTAAAAT AACCAATCTGATGGAGGAAATATTCAATTCGTATTTATCACAGGTACTAA CCGCTTTTTCTTCGTATTTGTTCAGCTACTCATCGACTACAATCCTGTAG AACTGCTAAACTTTCAACTCCCGCTTAATCCCCACTCTGTCGCCACAAAC GCCACAAACGAAGGCTAGTTCCGTTGAGGATTTTCAAGCCTTTTTAGTAC CTTACAGTGCATTTCTTTCTTCTTTTTTTTGACCCTAGCATTGTGTTTCG GAAAAAGACACCCTGTGTGACAACGGTTATTTTCGGTTAGTGTCGGTTAT TTTGCCATGATAACTCTCCCCTGGAAATATCATTTAATTTGCGAATATTT TATTGCAGTACGAATTAAAACCACCGATGCCTTCGAAAACCATGCGTAAT ATTGTGGCGCAAGTCAAGAAGTTGCGTGAAACAATGGCCGCCATTTTGTC CGAACAACAACTTGAAGTCCTGTTTCGTGACGTCAGAAGAAAATTTAAAG ACTGTCTTGCGTCGAAGCTAGCGGATTTTGGTGTATCAAATGATGGAGGG CCTCAGCACGGGTTCGTATATTTTCACTTGTATTTAATGCTTTATCCATC GTTTAAGGCCCCCTTTAAGAGCAATATGATTTCAAGTGTATGGTCATACA GTAACCATAAATGCCGAAAATCCCCGGTTGGAAGATGTTTTTAAAAAAAG GCGTGATTAATCGAGAATGAAGGTCTGTTTCAAGGTCATATTTCCCTGTT GGAGGAGACAATTTAAAAAAATCTTGAAAATCATATTATGTTTTCTTTAT AGATTGGTTACTTCAGATGTCATTTTTTACTCGACCAGTTTGAATAAGTT GACGGGTTTCAAAGACTTGGATCATAAATGTGACGGACTTTGGAATTCAA TCAATGAGCTTAAAAAAACTCGCAAAAAACATGAACAACATTCATCGAAA AGTCAGCAGCGGGCTTCATCAGCAAAAACGAAAAGTAACAGGTGATGTCA GTAGATCCTTTTTAATGGTTATGTTTTTTTTTGTAAAATACAGAACTTTT TTTATAATTTTAGACTGTTTCTCGAGTCCCCATTCAGTCCATTCCGTGAC CTCTTTTTTGAGGGCAAACTTTTCAAATCTGTAGCGAGAGAGTAGATTTT TATAGGCATACACGCTTTTTTTATAAGAATATCTTATATAAGAATATCAG GGTGAAAATTGGCCAAATCGTAAGAATACCCTAAGAATACCCTCTAGGGT GAGTTTCACAGAATTTGATAAAAATACAGTCATTTTGTATTTGGTTAACA GAAAAACTGCTTCCTTTGTTAGACTTGAATTTAAACTTGTGGAGAAATGT AATTTTAGCTCAAAA

Coding sequence (CDS) from alignment at sc0000128:14115..21979-

>TCONS_00011467 ID=TCONS_00011467|Name=TCONS_00011467|organism=Clytia hemisphaerica|type=CDS|length=5364bp|location=Sequence derived from alignment at sc0000128:14115..21979- (Clytia hemisphaerica)
ATTGGTTACTTCAGATGTCATTTTTTACTCGACCAGTTTGAATAAGTTGA
CGGGTTTCAAAGACTTGGATCATAAATGTGACGGACTTTGGAATTCAATC
AATGAGCTTAAAAAAACTCGCAAAAAACATGAACAACATTCATCGAAAAG
TCAGCAGCGGGCTTCATCAGCAAAAACGAAAAGTAACAGGTGATACGAAT
TAAAACCACCGATGCCTTCGAAAACCATGCGTAATATTGTGGCGCAAGTC
AAGAAGTTGCGTGAAACAATGGCCGCCATTTTGTCCGAACAACAACTTGA
AGTCCTGTTTCGTGACGTCAGAAGAAAATTTAAAGACTGTCTTGCGTCGA
AGCTAGCGGATTTTGGTGTATCAAATGATGGAGGGCCTCAGCACGGGATT
ACAACAATCACAGACACGAACTATTATGTAAAATAACCAATCTGATGGAG
GAAATATTCAATTCGTATTTATCACAGATATTCAATTCGCGCGCATGTCA
GTTAGTGTTGGGCGCAGGCGCCTTACAGACAGTTGGCTTGAAGACCATCA
CGGCGAAACACTTGATGCTCGTTGCGCAATGTTTACAAGTTGTGATACTA
AACATCAATACAATCAAAAATCACTTCGAATTGAGGCTGACACCCAAACA
ATACGTCATGTTAACGCAATTTGATCAAATATTAAAGGACATTGTTAATT
TTGATGAAGATCATTGCGGAATATTGTCAATGCATTGATGACGTACCAAT
GTTGGTCACTGACGTCATGACACGTTTGTGCGAATTACTCAAAATGGACA
AAACGATCAATTCACAGAGCAGTACCACAAGCGATACAGCAACAGCTATG
AATACCATGTTGTTTGTGCAAGGACAAGAATTCGCTGTTGTTGGATTGGT
TACTTCAGATGTCATTTTTTACTCGACCAGTTTGAATAAGTTGACGGGTT
TCAAAGACTTGGATCATAAATGTGACGGACTTTGGAATTCAATCAATGAG
CTTAAAAAAACTCGCAAAAAACATGAACAACATTCATCGAAAAGTCAGCA
GCGGGCTTCATCAGCAAAAACGAAAAGTAACAGGTGATACGAATTAAAAC
CACCGATGCCTTCGAAAACCATGCGTAATATTGTGGCGCAAGTCAAGAAG
TTGCGTGAAACAATGGCCGCCATTTTGTCCGAACAACAACTTGAAGTCCT
GTTTCGTGACGTCAGAAGAAAATTTAAAGACTGTCTTGCGTCGAAGCTAG
CGGATTTTGGTGTATCAAATGATGGAGGGCCTCAGCACGGGATTACAACA
ATCACAGACACGAACTATTATGTAAAATAACCAATCTGATGGAGGAAATA
TTCAATTCGTATTTATCACAGATATTCAATTCGCGCGCATGTCAGTTAGT
GTTGGGCGCAGGCGCCTTACAGACAGTTGGCTTGAAGACCATCACGGCGA
AACACTTGATGCTCGTTGCGCAATGTTTACAAGTTGTGATACTAAACATC
AATACAATCAAAAATCACTTCGAATTGAGGCTGACACCCAAACAATACGT
CATGTTAACGCAATTTGATCAAATATTAAAGGACATTGTTAATTTTGATG
AAGATCATTGCGGAATATTGTCAATGCATTGATGACGTACCAATGTTGGT
CACTGACGTCATGACACGTTTGTGCGAATTACTCAAAATGGACAAAACGA
TCAATTCACAGAGCAGTACCACAAGCGATACAGCAACAGCTATGAATACC
ATGTTGTTTGTGCAAGGACAAGAATTCGCTGTTGTTGGATTGGTTACTTC
AGATGTCATTTTTTACTCGACCAGTTTGAATAAGTTGACGGGTTTCAAAG
ACTTGGATCATAAATGTGACGGACTTTGGAATTCAATCAATGAGCTTAAA
AAAACTCGCAAAAAACATGAACAACATTCATCGAAAAGTCAGCAGCGGGC
TTCATCAGCAAAAACGAAAAGTAACAGGTGATACGAATTAAAACCACCGA
TGCCTTCGAAAACCATGCGTAATATTGTGGCGCAAGTCAAGAAGTTGCGT
GAAACAATGGCCGCCATTTTGTCCGAACAACAACTTGAAGTCCTGTTTCG
TGACGTCAGAAGAAAATTTAAAGACTGTCTTGCGTCGAAGCTAGCGGATT
TTGGTGTATCAAATGATGGAGGGCCTCAGCACGGGATTACAACAATCACA
GACACGAACTATTATGTAAAATAACCAATCTGATGGAGGAAATATTCAAT
TCGTATTTATCACAGATATTCAATTCGCGCGCATGTCAGTTAGTGTTGGG
CGCAGGCGCCTTACAGACAGTTGGCTTGAAGACCATCACGGCGAAACACT
TGATGCTCGTTGCGCAATGTTTACAAGTTGTGATACTAAACATCAATACA
ATCAAAAATCACTTCGAATTGAGGCTGACACCCAAACAATACGTCATGTT
AACGCAATTTGATCAAATATTAAAGGACATTGTTAATTTTGATGAAGATC
ATTGCGGAATATTGTCAATGCATTGATGACGTACCAATGTTGGTCACTGA
CGTCATGACACGTTTGTGCGAATTACTCAAAATGGACAAAACGATCAATT
CACAGAGCAGTACCACAAGCGATACAGCAACAGCTATGAATACCATGTTG
TTTGTGCAAGGACAAGAATTCGCTGTTGTTGGATTGGTTACTTCAGATGT
CATTTTTTACTCGACCAGTTTGAATAAGTTGACGGGTTTCAAAGACTTGG
ATCATAAATGTGACGGACTTTGGAATTCAATCAATGAGCTTAAAAAAACT
CGCAAAAAACATGAACAACATTCATCGAAAAGTCAGCAGCGGGCTTCATC
AGCAAAAACGAAAAGTAACAGGTGATACGAATTAAAACCACCGATGCCTT
CGAAAACCATGCGTAATATTGTGGCGCAAGTCAAGAAGTTGCGTGAAACA
ATGGCCGCCATTTTGTCCGAACAACAACTTGAAGTCCTGTTTCGTGACGT
CAGAAGAAAATTTAAAGACTGTCTTGCGTCGAAGCTAGCGGATTTTGGTG
TATCAAATGATGGAGGGCCTCAGCACGGGATTACAACAATCACAGACACG
AACTATTATGTAAAATAACCAATCTGATGGAGGAAATATTCAATTCGTAT
TTATCACAGATATTCAATTCGCGCGCATGTCAGTTAGTGTTGGGCGCAGG
CGCCTTACAGACAGTTGGCTTGAAGACCATCACGGCGAAACACTTGATGC
TCGTTGCGCAATGTTTACAAGTTGTGATACTAAACATCAATACAATCAAA
AATCACTTCGAATTGAGGCTGACACCCAAACAATACGTCATGTTAACGCA
ATTTGATCAAATATTAAAGGACATTGTTAATTTTGATGAAGATCATTGCG
GAATATTGTCAATGCATTGATGACGTACCAATGTTGGTCACTGACGTCAT
GACACGTTTGTGCGAATTACTCAAAATGGACAAAACGATCAATTCACAGA
GCAGTACCACAAGCGATACAGCAACAGCTATGAATACCATGTTGTTTGTG
CAAGGACAAGAATTCGCTGTTGTTGGATTGGTTACTTCAGATGTCATTTT
TTACTCGACCAGTTTGAATAAGTTGACGGGTTTCAAAGACTTGGATCATA
AATGTGACGGACTTTGGAATTCAATCAATGAGCTTAAAAAAACTCGCAAA
AAACATGAACAACATTCATCGAAAAGTCAGCAGCGGGCTTCATCAGCAAA
AACGAAAAGTAACAGGTGATACGAATTAAAACCACCGATGCCTTCGAAAA
CCATGCGTAATATTGTGGCGCAAGTCAAGAAGTTGCGTGAAACAATGGCC
GCCATTTTGTCCGAACAACAACTTGAAGTCCTGTTTCGTGACGTCAGAAG
AAAATTTAAAGACTGTCTTGCGTCGAAGCTAGCGGATTTTGGTGTATCAA
ATGATGGAGGGCCTCAGCACGGGATTACAACAATCACAGACACGAACTAT
TATGTAAAATAACCAATCTGATGGAGGAAATATTCAATTCGTATTTATCA
CAGATATTCAATTCGCGCGCATGTCAGTTAGTGTTGGGCGCAGGCGCCTT
ACAGACAGTTGGCTTGAAGACCATCACGGCGAAACACTTGATGCTCGTTG
CGCAATGTTTACAAGTTGTGATACTAAACATCAATACAATCAAAAATCAC
TTCGAATTGAGGCTGACACCCAAACAATACGTCATGTTAACGCAATTTGA
TCAAATATTAAAGGACATTGTTAATTTTGATGAAGATCATTGCGGAATAT
TGTCAATGCATTGATGACGTACCAATGTTGGTCACTGACGTCATGACACG
TTTGTGCGAATTACTCAAAATGGACAAAACGATCAATTCACAGAGCAGTA
CCACAAGCGATACAGCAACAGCTATGAATACCATGTTGTTTGTGCAAGGA
CAAGAATTCGCTGTTGTTGGATTGGTTACTTCAGATGTCATTTTTTACTC
GACCAGTTTGAATAAGTTGACGGGTTTCAAAGACTTGGATCATAAATGTG
ACGGACTTTGGAATTCAATCAATGAGCTTAAAAAAACTCGCAAAAAACAT
GAACAACATTCATCGAAAAGTCAGCAGCGGGCTTCATCAGCAAAAACGAA
AAGTAACAGGTGATACGAATTAAAACCACCGATGCCTTCGAAAACCATGC
GTAATATTGTGGCGCAAGTCAAGAAGTTGCGTGAAACAATGGCCGCCATT
TTGTCCGAACAACAACTTGAAGTCCTGTTTCGTGACGTCAGAAGAAAATT
TAAAGACTGTCTTGCGTCGAAGCTAGCGGATTTTGGTGTATCAAATGATG
GAGGGCCTCAGCACGGGATTACAACAATCACAGACACGAACTATTATGTA
AAATAACCAATCTGATGGAGGAAATATTCAATTCGTATTTATCACAGATA
TTCAATTCGCGCGCATGTCAGTTAGTGTTGGGCGCAGGCGCCTTACAGAC
AGTTGGCTTGAAGACCATCACGGCGAAACACTTGATGCTCGTTGCGCAAT
GTTTACAAGTTGTGATACTAAACATCAATACAATCAAAAATCACTTCGAA
TTGAGGCTGACACCCAAACAATACGTCATGTTAACGCAATTTGATCAAAT
ATTAAAGGACATTGTTAATTTTGATGAAGATCATTGCGGAATATTGTCAA
TGCATTGATGACGTACCAATGTTGGTCACTGACGTCATGACACGTTTGTG
CGAATTACTCAAAATGGACAAAACGATCAATTCACAGAGCAGTACCACAA
GCGATACAGCAACAGCTATGAATACCATGTTGTTTGTGCAAGGACAAGAA
TTCGCTGTTGTTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006425XLOC_006425Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011467-proteinTCONS_00011467-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011467-exon-sc0000128-1575043694:21879..21979TCONS_00011467-exon-sc0000128-1575043694:21879..21979Clytia hemisphaericaexon
TCONS_00011467-exon-sc0000128-1575043694:21020..21125TCONS_00011467-exon-sc0000128-1575043694:21020..21125Clytia hemisphaericaexon
TCONS_00011467-exon-sc0000128-1575043694:20205..20414TCONS_00011467-exon-sc0000128-1575043694:20205..20414Clytia hemisphaericaexon
TCONS_00011467-exon-sc0000128-1575043694:15437..15517TCONS_00011467-exon-sc0000128-1575043694:15437..15517Clytia hemisphaericaexon
TCONS_00011467-exon-sc0000128-1575043694:14919..15121TCONS_00011467-exon-sc0000128-1575043694:14919..15121Clytia hemisphaericaexon
TCONS_00011467-exon-sc0000128-1575043694:14115..14677TCONS_00011467-exon-sc0000128-1575043694:14115..14677Clytia hemisphaericaexon
TCONS_00011467-exon-sc0000128-1510915933:21879..21979TCONS_00011467-exon-sc0000128-1510915933:21879..21979Clytia hemisphaericaexon
TCONS_00011467-exon-sc0000128-1510915933:21020..21125TCONS_00011467-exon-sc0000128-1510915933:21020..21125Clytia hemisphaericaexon
TCONS_00011467-exon-sc0000128-1510915933:20205..20414TCONS_00011467-exon-sc0000128-1510915933:20205..20414Clytia hemisphaericaexon
TCONS_00011467-exon-sc0000128-1510915933:15437..15517TCONS_00011467-exon-sc0000128-1510915933:15437..15517Clytia hemisphaericaexon
TCONS_00011467-exon-sc0000128-1510915933:14919..15121TCONS_00011467-exon-sc0000128-1510915933:14919..15121Clytia hemisphaericaexon
TCONS_00011467-exon-sc0000128-1510915933:14115..14677TCONS_00011467-exon-sc0000128-1510915933:14115..14677Clytia hemisphaericaexon
TCONS_00011467-exon-sc0000128-1491911889:21879..21979TCONS_00011467-exon-sc0000128-1491911889:21879..21979Clytia hemisphaericaexon
TCONS_00011467-exon-sc0000128-1491911889:21020..21125TCONS_00011467-exon-sc0000128-1491911889:21020..21125Clytia hemisphaericaexon
TCONS_00011467-exon-sc0000128-1491911889:20205..20414TCONS_00011467-exon-sc0000128-1491911889:20205..20414Clytia hemisphaericaexon
TCONS_00011467-exon-sc0000128-1491911889:15437..15517TCONS_00011467-exon-sc0000128-1491911889:15437..15517Clytia hemisphaericaexon
TCONS_00011467-exon-sc0000128-1491911889:14919..15121TCONS_00011467-exon-sc0000128-1491911889:14919..15121Clytia hemisphaericaexon
TCONS_00011467-exon-sc0000128-1491911889:14115..14677TCONS_00011467-exon-sc0000128-1491911889:14115..14677Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000128supercontigsc0000128:14115..21979 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.49376 1.73016 0.63071 0.560034 4.15573 2.6342 3.81518 4.26773 2.0586 3.18188 2.96387 2.31263 3.06277 1.87204 0.651286 0.903505 0.901306 1.19185 0.899385 1.51738 1.12803 1.11066 2.73829 2.61558 3.63386 4.16847 0.955532 0.580612 4.04686 3.79949
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012501Vps54_C
Vocabulary: Biological Process
TermDefinition
GO:0042147retrograde transport, endosome to Golgi
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042147 retrograde transport, endosome to Golgi
Blast
BLAST of TCONS_00011467 vs. Swiss-Prot (Human)
Match: VPS54 (Vacuolar protein sorting-associated protein 54 OS=Homo sapiens GN=VPS54 PE=1 SV=2)

HSP 1 Score: 266.544 bits (680), Expect = 1.920e-79
Identity = 125/242 (51.65%), Postives = 174/242 (71.90%), Query Frame = 1
Query:   67 LFVQGQEFAVVGTLLILMKIIAEYCQCIDDVPMLVTDVMTRLCELLKIFNSRACQLVLGAGALQTVGLKTITAKHLMLVAQCLQVVILNINTIKNHFELRLTPKQYVMLTQFDQILKDYNNHRHELLCKITNLMEEIFNSYLSQYELKPPMPSKTMRNIVAQVKKLRETMAAILSEQQLEVLFRDVRRKFKDCLASKLADFGVSNDGGPQHGLVTSDVIFYSTSLNKLTGFKDLDHKCDGLW 792
            L V+GQ++AVVGT+L+L++II EYCQC+D++P + TD++TRL +LLK FNSR+CQLVLGAGALQ VGLKTIT K+L L ++CLQ+++  I  I+ HFE RL PKQY ML  FD I KDY++H  E+  K+  +M+ +F+  LS+YE+K P+PS   RNI  Q+ K+ E +  +L E+Q ++LF  +   +K  L  +L+   V NDGGPQ+GLVT+DV FY+ +L  L G KDLD     +W
Sbjct:  732 LIVEGQQYAVVGTVLLLIRIILEYCQCVDNIPSVTTDMLTRLSDLLKYFNSRSCQLVLGAGALQVVGLKTITTKNLALSSRCLQLIVHYIPVIRAHFEARLPPKQYSMLRHFDHITKDYHDHIAEISAKLVAIMDSLFDKLLSKYEVKAPVPSACFRNICKQMTKMHEAIFDLLPEEQTQMLFLRINASYKLHLKKQLSHLNVINDGGPQNGLVTADVAFYTGNLQALKGLKDLDLNMAEIW 973          
The following BLAST results are available for this feature:
BLAST of TCONS_00011467 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
VPS541.920e-7951.65Vacuolar protein sorting-associated protein 54 OS=... [more]
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