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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011467 ID=TCONS_00011467|Name=TCONS_00011467|organism=Clytia hemisphaerica|type=transcript|length=1264bp ATGGACAAAACGATCAATTCACAGAGCAGTACCACAAGCGATACAGCAAC AGCTATGAATACCATGTTGTTTGTGCAAGGACAAGAATTCGCTGTTGTTG GGACATtgttaattttgatgaagatcaTTGCGGAATATTGTCAATGCATT GATGACGTACCAATGTTGGTCACTGACGTCATGACACGTTTGTGCGAATT ACTCAAAatattcaatTCGCGCGCATGTCAGTTAGTGTTGGGCGCAGGCG CCTTACAGACAGTTGGCTTGAAGACCATCACGGCGAAACACTTGATGCTC GTTGCGCAATGTTTACAAGTTGTGATACTAAACATCAATACAATCAAAAA TCACTTCGAATTGAGGCTGACACCCAAACAATACGTCATGTTAACGCAAT TTGATCAAATATTAAAGgATTACAACAATCACAGACACGAACTATTATGT AAAATAACCAATCTGATGGAGGAAATATTCAATTCGTATTTATCACAGTA CGAATTAAAACCACCGATGCCTTCGAAAACCATGCGTAATATTGTGGCGC AAGTCAAGAAGTTGCGTGAAACAATGGCCGCCATTTTGTCCGAACAACAA CTTGAAGTCCTGTTTCGTGACGTCAGAAGAAAATTTAAAGACTGTCTTGC GTCGAAGCTAGCGGATTTTGGTGTATCAAATGATGGAGGGCCTCAGCACG GATTGGTTACTTCAGATGTCATTTTTTACTCGACCAGTTTGAATAAGTTG ACGGGTTTCAAAGACTTGGATCATAAATGTGACGGACTTTGGAATTCAAT CAATGAGCTTAAAAAAACTCGCAAAAAACATGAACAACATTCATCGAAAA GTCAGCAGCGGGCTTCATCAGCAAAAACGAAAAGTAACAGGTGATGTCAG TAGATCCTTTTTAAtggttatgtttttttttgtaaaatacagaacttttt ttataattttagacTGTTTCTCGAGTCCCCATTCAGTCCATTCCGTGACC TCTTTTTTGAGGGCAAACTTTTCAAATCTGTAGCGAGAGAGTAGATTTTT ATAggcatacacgctttttttataagaatatcttatataagaatatcagg gtgaaaattggccaaatcgtaagaataccctaagaataccctctagggtg agtttcacagaatttgataaaaatacagtcattttgtatttggttaacag aaaaactgcttcctttgttagacttgaatttaaacttgtggagaaatgta attttagctcAAAA Run BLAST on NCBI protein sequence of TCONS_00011467-protein >TCONS_00011467-protein ID=TCONS_00011467-protein|Name=TCONS_00011467-protein|organism=Clytia hemisphaerica|type=polypeptide|length=297bp
MDKTINSQSSTTSDTATAMNTMLFVQGQEFAVVGTLLILMKIIAEYCQCI DDVPMLVTDVMTRLCELLKIFNSRACQLVLGAGALQTVGLKTITAKHLML VAQCLQVVILNINTIKNHFELRLTPKQYVMLTQFDQILKDYNNHRHELLC KITNLMEEIFNSYLSQYELKPPMPSKTMRNIVAQVKKLRETMAAILSEQQ LEVLFRDVRRKFKDCLASKLADFGVSNDGGPQHGLVTSDVIFYSTSLNKL TGFKDLDHKCDGLWNSINELKKTRKKHEQHSSKSQQRASSAKTKSNR Run BLAST on NCBI transcript from alignment at sc0000128:14115..21979- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011467 ID=TCONS_00011467|Name=TCONS_00011467|organism=Clytia hemisphaerica|type=transcript|length=7865bp|location=Sequence derived from alignment at sc0000128:14115..21979- (Clytia hemisphaerica) ATGGACAAAACGATCAATTCACAGAGCAGTACCACAAGCGATACAGCAAC
AGCTATGAATACCATGTTGTTTGTGCAAGGACAAGAATTCGCTGTTGTTG
GGTAAGTTGTCTACTTGAGTGTTTTTAACGGACGGAGATCAACAATATTA
TAGATTTAATCACAGTCCATTCTCAACTCAAAGGCAATTTTTATGAGTGA
CCCAATTGATTAATTTTGTTGTTTTGATCTCAGCAACTTTTATTAGCCAT
TCTATTCCGGCTTACGCTTAAACAGTTTAAAGTTTTCATATTTGACAGAT
TTTTTGATGTGAAAATGGTAGCTGAAATTTATAATGACAACAGGGGAATG
TAAATCAAATAGTAGAATTCATATTGTGTGGGTGGCTCACTTTTTTGTCG
AAATTTGAAAATGAGCAAAGGATATTTTGTGAGGTTAAGTACCGTGGATT
ATTCACGAACACGAACGGGAAATATTAAAGGCTTTTTTAAATTCAAAAAT
TGATTGGTTGAACTACACTAGTGTCTTTCATGTTCCATTCGCGCATGAAT
TATCTACGGTACTAAACCTCACTAATGGTATGCGAGATACGAGCGGGATT
TTTGGAAAAGCCTTTTAAATTTATATTTTAGCGATTGGTTTATGGGGTTT
AAGGAAGCTATCAATGGCTAGATTTAAGCATTGATTGGCTGGTAGATTTA
TATTATTGCTTATTTATTTAACGAACAGCTTTAGTAGTCGAAGGTTAAAA
CAAATCAATTTGAAAACAAATTCTGATGTTGTTAAATGCGGTTGTGCGCA
GGGCAGATAGACGTGAACGGATCTTATTTATCACTCTCTTATATTATGTT
TTAGGACATTGTTAATTTTGATGAAGATCATTGCGGAATATTGTCAATGC
ATTGATGACGTACCAATGTTGGTCACTGACGTCATGACACGTTTGTGCGA
ATTACTCAAAGTAGGTCTATTTCTCCTTCATAGCTATGCTAATTTAACGA
GCAGTACAATTCTTATGTTTATCTCAGATCAAGACTTCAAAATCAAAAAT
TTAAGACTTTAAAAGATTTAGAAAACACGAATTACATGTGTTGCCAGTCG
ACTTGTGCATCAATGCCGAAAACGGCGTTGGTCAGCTTTTTGGCACGAAA
AGTGATGAAATACAGCATTTGTCTGGGAAATTAAACAGTGTTGTATTTTT
TTTTAATTTGATTATGTTATATATCCAAGCAGTGACTTACGGGATTAGTA
GTTTTATGAATCGGCTTAGGCATTAGCTATATAGTTGATTTCTACTTGCA
AAGCTTTCGCTACCACAAAGCAAGGCAGTCCAAGATCTCACTCGTCAAAA
TTCTGTTGATGTTCTCCGATTCGATTTTCAAGGGGAATTGGATCTTCATC
GAAGAAGGGAGCCTATTTAGGAGAATTTCTTGTTGATGGCAACTTTTAAT
ATTATCGAATAACGGAGCGTATTGTGTCAAGTGTCAACTGTAAGTTTTTA
CAACAAAACTGCAGGATGTGGTCCTTATTATTCAATTCACTCATTTCGCC
TTCTCTTTTTTTTAGATATTCAATTCGCGCGCATGTCAGTTAGTGTTGGG
CGCAGGCGCCTTACAGACAGTTGGCTTGAAGACCATCACGGCGAAACACT
TGATGCTCGTTGCGCAATGTTTACAAGTTGTGATACTAAACATCAATACA
ATCAAAAATCACTTCGAATTGAGGCTGACACCCAAACAATACGTCATGTT
AACGCAATTTGATCAAATATTAAAGGTATTTTTAAACTTCAGTTGCTAGC
TAGAGTGTGAAAATGGTTGTTAGTCTGCCTGTCTGTTTATATGTGTCCCT
CTTCAACTTTTAACTTCAAATTAAATATTTAGGGACTGAGACGAAATTTT
TTTCCACAAGATTTCAAGTGTCGGATATCTTGAAAAATATATTTTTTTAA
TTAAGATTGTTTAAAAAAAAGAAGTTTAATACAAGAATTATATAGTCAAA
AGGATAATCTGATGGCTTAAGTAAAGATCTTCGGCATGAAAGTCCGAAGT
TTTTTGTCCTGGGCGAAACCTCAAAAAACGATTTCTTAAGTTTATATAGC
AAAGGTAAAATTTATTTGAAGAAATAGCAAGGTAAGCTAGACAGAGATTT
CAGTAGGTTAAGGATCTCAAATTACCCTCAGATCATCCCTCAAGTTTTAT
GTTATCTTATATTGAATCATCAAAATAAAAAATAACCCGTTTTTAAGAAC
TGAAGAAAACAATATGTGAACCTTAGATAAATCCTCCAATCTTTGGATTT
TATTGTCCATTTTAAAAGTAGTCACAGCCAATTTTACATTCGTCGACGGT
TGGAAAGGTTGAGCAACCTTCTCTTGAGCATGCGACGCACAAATTGAATG
TGTACCCCTCGACCTTCGGAAAGCAGCCAGATTGCCCGTTGCGCTCACAT
TTCGTTCGGCAGCTACCGACAGTGACTCCAAGGTGTCGCATTTTACACGC
ATGCGTACACGAAAACATTTGATTACATCCTTTTTGAAGGCTTGTATCTG
ATGCGCATGCGAATTCACTGCACGCATTTAAACATCCTGCCAAACGTTTA
TCTACAAGTGAAATGCAAACATTATGTAATGGTTCGAATGAGATGCAAAT
GGATCCTTATTATTCATTAAGCAATCGAATTTTAATTAGTTCTATTAATC
AAAGAATCAAAAAGGTAAAATATAGTTTACACAAATAATAATAATAGGTT
CGGGTTAACCCAGATATCGGGAATTATCGTTTGGCGATAGTTTAAATCTC
AAAAATAGATCTTCACTTGAGTTTTAATGCGGTAAATTGTGCCTTTAAAT
ACTTTCAAAGTCAGGTAATTATAGACCTTATCTATTTAGAACCAAATAAG
AGACTCTTCTTTTGACAGCTGAAAATATTTTCAAATTTTGATAAACGGGA
GGGGACTTATTACCTGGGGGTTGGAAATTGTACTTCAAAATAAGGTAATT
ATAGACTAAAATTTAGCTATTTAGAGCAAAATAAGGGACTTTTCTTTTGA
TAGCTGAAAATATAAATAAACGTGAAAGGGGGTCCTTAAATGGTCCGGGG
TGTGGAAGAAATCAAAAAACTAACAAGCGTAGGGCGTTTATTAGGCACAC
GGTAGGATAGGATGTACGTAGCCTTACCTTCTTGTGCTTGAGCACTGCAG
CTGGATGGACAAGCCTTATTCATGAATGAAGGGTTTTTGGTGCATTCTCC
ACGTCTTGCCCAATAACTGCATGACCAACGTTTATCACCATGAAAGCCTG
CCATAAAAAGAATGGTATTTATAGAAGTCTGATTTTAAAGCCGTTAATTT
CCAAGCTACTGCAAACGACTCTCTAAAAGTAAACATACAATTAAAGCTTT
TCAGGGCCAAAGGATTTGTTCTTTTCACATTCATCATGTGATTTTTAAGG
TGTGACAGGAACCTATTGTAACAAACCTAGCTTAAATCAACTGATATCAA
GCAAGTCTTCTTGACTTAAAAAAGTAACACTTTGTGGGAACGCTCCTTAT
ACAGTCGAGTCTCCATAACTCGAACACGGGCGGGAAACAGAAATTTGTTT
GAATTAAGGAAATTATTGAGTATTATGGAGTTATGAAGTAAGGCTTATAA
GGTTAACTGATGGGGCAAGAAAACTTGTTCGAGTTAAGGAGGTTCGAAGT
AAAGAGATTCTACTGCAATAACAACGAGATAATATTAGTAGCGTATGTAC
TTACAGACGTCACAGGCAGGAGCACAGCTGACAATCATGTAGGCTGGGTT
TTCATGGCATTCACCTCTTTTGGCCCAACTATCGCAATTATCGTTCGTGT
TCTTGCAGTTTATGTCGTTGCTGATGACCGCTCCACGTGCACTGTGAACT
GTAAACAAAATGTCAAGATTCAAAGTTAAAATCTTTCCATCCCGGTGCTA
CTTAAATGTGATTTTTATTTCGTTACGCTTAAGATTAACTTAATCTTTCC
CTCTATACCGGAGAAATTCACATCATCCCAAATTGATGCACGGGTTTAAA
GTTTGAACCATCTTTTGTATTCAAATGTCGAGAAAAAGTAAAATGTTACC
TGCTACTACAGCAATGCAAATGAGTGTTGTCAATCCCTTCATTTTGTTTT
GTGTGTGTTTTGTGTGTTTTTCTTCTTGTCAAGTCAATGGCTTCTTTTGC
TTTGAATGATTTCTCAGTGGTCCTTGTCCTTATTTATAGTCTTTTCTACA
GACCATTTTCTTCCTTTTTCGCCTATTCTTTCTTTTCGAAACTGAGAGGA
TGATTTTTTAATTTGCGTAATTTTATAGCTACTAATATTTCATTTTTTTA
ATTACAGGAAACTCATTAAAACGAATTCATAACTATATCGTATCGTATTT
TCGAATAGGTAATCTTAGACCACGGTCACATTCGCTCCGAAACGAATGAA
GTCATTCCATTGGTTAAACTCAAGTTTTACGTCACTTCTAACCAATGGAA
TGACTTAATTTCGTTTCGGAGCGAAACGGAACCGTAGTGTAGAAACGTGG
TCTTGTACTATAACTTATTTTATGGAAGCCCTAAGTATGCCGTCCAACCT
AGAGTTCTTTCTTGTAAGATTTACAGATCGAGATCAAAAGTCCCTTGAGC
TGTTTTTAAAGATTTTAAGAACAATAAATCTTTCCTGTCTAGAAATATTC
CAATGTTCTGGTGATAAAGTTCTTTTTTTTTTTTTTTTTTTTTTGCAATA
CATTAAAATAGTAAGATGCAATAACGATTACTTAGGACCTGAATACACAG
GTTGCAAAAGTCTGAAGACAAATCACGCTTTTTACTAGAAATTTTTATGT
GCTTGTTGTTATGTTACATGAGATTTATTTTTGATTGATTCGAATGTATT
GCCACTAAAAAAGTTATCAGCTGTTGAGTTGTAAAGCAAGTAACATGGAA
ATAGAATCGGGTGAACTTTTTCGAGTAATCACATGTTTTGATTGCATTGA
TATAATTTTGCAATCTGTGTATTCTCACTTAACGTATCCGATCATGACAA
GTGGCAGAGCTTGATAAAAAAATGTACAGTATTAGACTAGATAGACACCT
GACATTGCAAGCTCTTTACAAGTACAATACTATGGTTGAAAAATAGAAGC
TCAAAGTCAGGTCTTAGTCAAAAAAGCCATAATTTCACCTTTATATGGTA
ATGTACAATGGACTCTCGGTTAATCAAAGTAAATCGACTTTCCCCGTTTT
ATCCTCTTTTTAAGTGGTTTCTTATTCCCGTGGATAAGAGGCTATTTTCT
TCCAGTTATTCGAAGTCTAACAGTTTTATAAGTTATGGGGTATCAACTGG
TTGAAATCCCCATGATATTCCAAAGACAAAGAGAGAATGAGGCTAAGACA
GCCAGTTAAGTATTTGATTTGATTTTTATTTGATTTGGAAGGTCGTTGGA
CTAAAATCGAACGTGCACAACACACACTGGGCTAGAATTCATCCAACTTT
ATGGAGATTAAATTGGAGTAAAAATTGAAAACTTGTTTCAGGCTACAAAT
ATTGCATTTTTTGAAAAGTATGGAACGTGTGCAAAAATTTAGCCACTTCC
AACCATTTTCGACTGCTGCTCAAAAGATTTTAGCCTCATTTTGGCGAAAC
TTGTACCAAAGTCCCAAAATTTAAATTTTGAAGAAAAAAAACGCTTCCAG
GGGTTTGCTAAAGATAAATTGTACGACAAATCATTTTTTAAGTCTGCCCA
AAGACTTGCTCTAAGTTTATTATACCATTTACATGGAGTTAATCTGAACT
AGACAAAGATAGTGGTCAATATTGGGCTGATCCATTAAAAAAAAAGGTAA
AATTTCCAAAAAAACCCTTGGAAAAGTTCTTTTCATACTTAAAAGTGAGG
GTGGACGAACTAGAATCAGTCTTTTACCTACTAGAAATTTTAGAATAACT
TTTTACCCCCTTGGAAAAATGAAAACACACCCCCTTTTCTCAGATTATGA
TATGAAATGTTCGTCCACCCCCTGTATAGATATAAAATGNACTGTGTTCG
AATCGCAAGCTCTTCCAAGCAGGGTCTTAGGGAAATATGGTGATAGACTC
TCTACCTTCAATCACAATTGACGCTCTCTAATTTAACGTTCAAATATTCC
ATCCCCTCCATTATTCGATAATATTGAAAGTCACCGTCAACAAGAAACTC
TCATAAACGACGCACTTCTATTTGATACGTTTCCTTATTCAATGAAAATT
GAATTCCCCTTGAAAATCGAATTAAAGAGCGTCAAATGTACTATGGTGTC
TACGGGACCATGAAAACCTCGAAAAAGAACCATCCAATCTTGAAAATTTA
CTAATAGATGTTGTGGAAGAAAATCCACCTTGAAAATGGAGAAAAATATT
CATGGACTTCCTACTACTAGATGCTAAAAGAAGGAATATTTTATATTTTA
TATTTTATATAGGATTACAACAATCACAGACACGAACTATTATGTAAAAT
AACCAATCTGATGGAGGAAATATTCAATTCGTATTTATCACAGGTACTAA
CCGCTTTTTCTTCGTATTTGTTCAGCTACTCATCGACTACAATCCTGTAG
AACTGCTAAACTTTCAACTCCCGCTTAATCCCCACTCTGTCGCCACAAAC
GCCACAAACGAAGGCTAGTTCCGTTGAGGATTTTCAAGCCTTTTTAGTAC
CTTACAGTGCATTTCTTTCTTCTTTTTTTTGACCCTAGCATTGTGTTTCG
GAAAAAGACACCCTGTGTGACAACGGTTATTTTCGGTTAGTGTCGGTTAT
TTTGCCATGATAACTCTCCCCTGGAAATATCATTTAATTTGCGAATATTT
TATTGCAGTACGAATTAAAACCACCGATGCCTTCGAAAACCATGCGTAAT
ATTGTGGCGCAAGTCAAGAAGTTGCGTGAAACAATGGCCGCCATTTTGTC
CGAACAACAACTTGAAGTCCTGTTTCGTGACGTCAGAAGAAAATTTAAAG
ACTGTCTTGCGTCGAAGCTAGCGGATTTTGGTGTATCAAATGATGGAGGG
CCTCAGCACGGGTTCGTATATTTTCACTTGTATTTAATGCTTTATCCATC
GTTTAAGGCCCCCTTTAAGAGCAATATGATTTCAAGTGTATGGTCATACA
GTAACCATAAATGCCGAAAATCCCCGGTTGGAAGATGTTTTTAAAAAAAG
GCGTGATTAATCGAGAATGAAGGTCTGTTTCAAGGTCATATTTCCCTGTT
GGAGGAGACAATTTAAAAAAATCTTGAAAATCATATTATGTTTTCTTTAT
AGATTGGTTACTTCAGATGTCATTTTTTACTCGACCAGTTTGAATAAGTT
GACGGGTTTCAAAGACTTGGATCATAAATGTGACGGACTTTGGAATTCAA
TCAATGAGCTTAAAAAAACTCGCAAAAAACATGAACAACATTCATCGAAA
AGTCAGCAGCGGGCTTCATCAGCAAAAACGAAAAGTAACAGGTGATGTCA
GTAGATCCTTTTTAATGGTTATGTTTTTTTTTGTAAAATACAGAACTTTT
TTTATAATTTTAGACTGTTTCTCGAGTCCCCATTCAGTCCATTCCGTGAC
CTCTTTTTTGAGGGCAAACTTTTCAAATCTGTAGCGAGAGAGTAGATTTT
TATAGGCATACACGCTTTTTTTATAAGAATATCTTATATAAGAATATCAG
GGTGAAAATTGGCCAAATCGTAAGAATACCCTAAGAATACCCTCTAGGGT
GAGTTTCACAGAATTTGATAAAAATACAGTCATTTTGTATTTGGTTAACA
GAAAAACTGCTTCCTTTGTTAGACTTGAATTTAAACTTGTGGAGAAATGT
AATTTTAGCTCAAAA Coding sequence (CDS) from alignment at sc0000128:14115..21979- >TCONS_00011467 ID=TCONS_00011467|Name=TCONS_00011467|organism=Clytia hemisphaerica|type=CDS|length=5364bp|location=Sequence derived from alignment at sc0000128:14115..21979- (Clytia hemisphaerica) ATTGGTTACTTCAGATGTCATTTTTTACTCGACCAGTTTGAATAAGTTGA CGGGTTTCAAAGACTTGGATCATAAATGTGACGGACTTTGGAATTCAATC AATGAGCTTAAAAAAACTCGCAAAAAACATGAACAACATTCATCGAAAAG TCAGCAGCGGGCTTCATCAGCAAAAACGAAAAGTAACAGGTGATACGAAT TAAAACCACCGATGCCTTCGAAAACCATGCGTAATATTGTGGCGCAAGTC AAGAAGTTGCGTGAAACAATGGCCGCCATTTTGTCCGAACAACAACTTGA AGTCCTGTTTCGTGACGTCAGAAGAAAATTTAAAGACTGTCTTGCGTCGA AGCTAGCGGATTTTGGTGTATCAAATGATGGAGGGCCTCAGCACGGGATT ACAACAATCACAGACACGAACTATTATGTAAAATAACCAATCTGATGGAG GAAATATTCAATTCGTATTTATCACAGATATTCAATTCGCGCGCATGTCA GTTAGTGTTGGGCGCAGGCGCCTTACAGACAGTTGGCTTGAAGACCATCA CGGCGAAACACTTGATGCTCGTTGCGCAATGTTTACAAGTTGTGATACTA AACATCAATACAATCAAAAATCACTTCGAATTGAGGCTGACACCCAAACA ATACGTCATGTTAACGCAATTTGATCAAATATTAAAGGACATTGTTAATT TTGATGAAGATCATTGCGGAATATTGTCAATGCATTGATGACGTACCAAT GTTGGTCACTGACGTCATGACACGTTTGTGCGAATTACTCAAAATGGACA AAACGATCAATTCACAGAGCAGTACCACAAGCGATACAGCAACAGCTATG AATACCATGTTGTTTGTGCAAGGACAAGAATTCGCTGTTGTTGGATTGGT TACTTCAGATGTCATTTTTTACTCGACCAGTTTGAATAAGTTGACGGGTT TCAAAGACTTGGATCATAAATGTGACGGACTTTGGAATTCAATCAATGAG CTTAAAAAAACTCGCAAAAAACATGAACAACATTCATCGAAAAGTCAGCA GCGGGCTTCATCAGCAAAAACGAAAAGTAACAGGTGATACGAATTAAAAC CACCGATGCCTTCGAAAACCATGCGTAATATTGTGGCGCAAGTCAAGAAG TTGCGTGAAACAATGGCCGCCATTTTGTCCGAACAACAACTTGAAGTCCT GTTTCGTGACGTCAGAAGAAAATTTAAAGACTGTCTTGCGTCGAAGCTAG CGGATTTTGGTGTATCAAATGATGGAGGGCCTCAGCACGGGATTACAACA ATCACAGACACGAACTATTATGTAAAATAACCAATCTGATGGAGGAAATA TTCAATTCGTATTTATCACAGATATTCAATTCGCGCGCATGTCAGTTAGT GTTGGGCGCAGGCGCCTTACAGACAGTTGGCTTGAAGACCATCACGGCGA AACACTTGATGCTCGTTGCGCAATGTTTACAAGTTGTGATACTAAACATC AATACAATCAAAAATCACTTCGAATTGAGGCTGACACCCAAACAATACGT CATGTTAACGCAATTTGATCAAATATTAAAGGACATTGTTAATTTTGATG AAGATCATTGCGGAATATTGTCAATGCATTGATGACGTACCAATGTTGGT CACTGACGTCATGACACGTTTGTGCGAATTACTCAAAATGGACAAAACGA TCAATTCACAGAGCAGTACCACAAGCGATACAGCAACAGCTATGAATACC ATGTTGTTTGTGCAAGGACAAGAATTCGCTGTTGTTGGATTGGTTACTTC AGATGTCATTTTTTACTCGACCAGTTTGAATAAGTTGACGGGTTTCAAAG ACTTGGATCATAAATGTGACGGACTTTGGAATTCAATCAATGAGCTTAAA AAAACTCGCAAAAAACATGAACAACATTCATCGAAAAGTCAGCAGCGGGC TTCATCAGCAAAAACGAAAAGTAACAGGTGATACGAATTAAAACCACCGA TGCCTTCGAAAACCATGCGTAATATTGTGGCGCAAGTCAAGAAGTTGCGT GAAACAATGGCCGCCATTTTGTCCGAACAACAACTTGAAGTCCTGTTTCG TGACGTCAGAAGAAAATTTAAAGACTGTCTTGCGTCGAAGCTAGCGGATT TTGGTGTATCAAATGATGGAGGGCCTCAGCACGGGATTACAACAATCACA GACACGAACTATTATGTAAAATAACCAATCTGATGGAGGAAATATTCAAT TCGTATTTATCACAGATATTCAATTCGCGCGCATGTCAGTTAGTGTTGGG CGCAGGCGCCTTACAGACAGTTGGCTTGAAGACCATCACGGCGAAACACT TGATGCTCGTTGCGCAATGTTTACAAGTTGTGATACTAAACATCAATACA ATCAAAAATCACTTCGAATTGAGGCTGACACCCAAACAATACGTCATGTT AACGCAATTTGATCAAATATTAAAGGACATTGTTAATTTTGATGAAGATC ATTGCGGAATATTGTCAATGCATTGATGACGTACCAATGTTGGTCACTGA CGTCATGACACGTTTGTGCGAATTACTCAAAATGGACAAAACGATCAATT CACAGAGCAGTACCACAAGCGATACAGCAACAGCTATGAATACCATGTTG TTTGTGCAAGGACAAGAATTCGCTGTTGTTGGATTGGTTACTTCAGATGT CATTTTTTACTCGACCAGTTTGAATAAGTTGACGGGTTTCAAAGACTTGG ATCATAAATGTGACGGACTTTGGAATTCAATCAATGAGCTTAAAAAAACT CGCAAAAAACATGAACAACATTCATCGAAAAGTCAGCAGCGGGCTTCATC AGCAAAAACGAAAAGTAACAGGTGATACGAATTAAAACCACCGATGCCTT CGAAAACCATGCGTAATATTGTGGCGCAAGTCAAGAAGTTGCGTGAAACA ATGGCCGCCATTTTGTCCGAACAACAACTTGAAGTCCTGTTTCGTGACGT CAGAAGAAAATTTAAAGACTGTCTTGCGTCGAAGCTAGCGGATTTTGGTG TATCAAATGATGGAGGGCCTCAGCACGGGATTACAACAATCACAGACACG AACTATTATGTAAAATAACCAATCTGATGGAGGAAATATTCAATTCGTAT TTATCACAGATATTCAATTCGCGCGCATGTCAGTTAGTGTTGGGCGCAGG CGCCTTACAGACAGTTGGCTTGAAGACCATCACGGCGAAACACTTGATGC TCGTTGCGCAATGTTTACAAGTTGTGATACTAAACATCAATACAATCAAA AATCACTTCGAATTGAGGCTGACACCCAAACAATACGTCATGTTAACGCA ATTTGATCAAATATTAAAGGACATTGTTAATTTTGATGAAGATCATTGCG GAATATTGTCAATGCATTGATGACGTACCAATGTTGGTCACTGACGTCAT GACACGTTTGTGCGAATTACTCAAAATGGACAAAACGATCAATTCACAGA GCAGTACCACAAGCGATACAGCAACAGCTATGAATACCATGTTGTTTGTG CAAGGACAAGAATTCGCTGTTGTTGGATTGGTTACTTCAGATGTCATTTT TTACTCGACCAGTTTGAATAAGTTGACGGGTTTCAAAGACTTGGATCATA AATGTGACGGACTTTGGAATTCAATCAATGAGCTTAAAAAAACTCGCAAA AAACATGAACAACATTCATCGAAAAGTCAGCAGCGGGCTTCATCAGCAAA AACGAAAAGTAACAGGTGATACGAATTAAAACCACCGATGCCTTCGAAAA CCATGCGTAATATTGTGGCGCAAGTCAAGAAGTTGCGTGAAACAATGGCC GCCATTTTGTCCGAACAACAACTTGAAGTCCTGTTTCGTGACGTCAGAAG AAAATTTAAAGACTGTCTTGCGTCGAAGCTAGCGGATTTTGGTGTATCAA ATGATGGAGGGCCTCAGCACGGGATTACAACAATCACAGACACGAACTAT TATGTAAAATAACCAATCTGATGGAGGAAATATTCAATTCGTATTTATCA CAGATATTCAATTCGCGCGCATGTCAGTTAGTGTTGGGCGCAGGCGCCTT ACAGACAGTTGGCTTGAAGACCATCACGGCGAAACACTTGATGCTCGTTG CGCAATGTTTACAAGTTGTGATACTAAACATCAATACAATCAAAAATCAC TTCGAATTGAGGCTGACACCCAAACAATACGTCATGTTAACGCAATTTGA TCAAATATTAAAGGACATTGTTAATTTTGATGAAGATCATTGCGGAATAT TGTCAATGCATTGATGACGTACCAATGTTGGTCACTGACGTCATGACACG TTTGTGCGAATTACTCAAAATGGACAAAACGATCAATTCACAGAGCAGTA CCACAAGCGATACAGCAACAGCTATGAATACCATGTTGTTTGTGCAAGGA CAAGAATTCGCTGTTGTTGGATTGGTTACTTCAGATGTCATTTTTTACTC GACCAGTTTGAATAAGTTGACGGGTTTCAAAGACTTGGATCATAAATGTG ACGGACTTTGGAATTCAATCAATGAGCTTAAAAAAACTCGCAAAAAACAT GAACAACATTCATCGAAAAGTCAGCAGCGGGCTTCATCAGCAAAAACGAA AAGTAACAGGTGATACGAATTAAAACCACCGATGCCTTCGAAAACCATGC GTAATATTGTGGCGCAAGTCAAGAAGTTGCGTGAAACAATGGCCGCCATT TTGTCCGAACAACAACTTGAAGTCCTGTTTCGTGACGTCAGAAGAAAATT TAAAGACTGTCTTGCGTCGAAGCTAGCGGATTTTGGTGTATCAAATGATG GAGGGCCTCAGCACGGGATTACAACAATCACAGACACGAACTATTATGTA AAATAACCAATCTGATGGAGGAAATATTCAATTCGTATTTATCACAGATA TTCAATTCGCGCGCATGTCAGTTAGTGTTGGGCGCAGGCGCCTTACAGAC AGTTGGCTTGAAGACCATCACGGCGAAACACTTGATGCTCGTTGCGCAAT GTTTACAAGTTGTGATACTAAACATCAATACAATCAAAAATCACTTCGAA TTGAGGCTGACACCCAAACAATACGTCATGTTAACGCAATTTGATCAAAT ATTAAAGGACATTGTTAATTTTGATGAAGATCATTGCGGAATATTGTCAA TGCATTGATGACGTACCAATGTTGGTCACTGACGTCATGACACGTTTGTG CGAATTACTCAAAATGGACAAAACGATCAATTCACAGAGCAGTACCACAA GCGATACAGCAACAGCTATGAATACCATGTTGTTTGTGCAAGGACAAGAA TTCGCTGTTGTTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00011467-exon-sc0000128-1575043694:21879..21979 | TCONS_00011467-exon-sc0000128-1575043694:21879..21979 | Clytia hemisphaerica | exon |
TCONS_00011467-exon-sc0000128-1575043694:21020..21125 | TCONS_00011467-exon-sc0000128-1575043694:21020..21125 | Clytia hemisphaerica | exon |
TCONS_00011467-exon-sc0000128-1575043694:20205..20414 | TCONS_00011467-exon-sc0000128-1575043694:20205..20414 | Clytia hemisphaerica | exon |
TCONS_00011467-exon-sc0000128-1575043694:15437..15517 | TCONS_00011467-exon-sc0000128-1575043694:15437..15517 | Clytia hemisphaerica | exon |
TCONS_00011467-exon-sc0000128-1575043694:14919..15121 | TCONS_00011467-exon-sc0000128-1575043694:14919..15121 | Clytia hemisphaerica | exon |
TCONS_00011467-exon-sc0000128-1575043694:14115..14677 | TCONS_00011467-exon-sc0000128-1575043694:14115..14677 | Clytia hemisphaerica | exon |
TCONS_00011467-exon-sc0000128-1510915933:21879..21979 | TCONS_00011467-exon-sc0000128-1510915933:21879..21979 | Clytia hemisphaerica | exon |
TCONS_00011467-exon-sc0000128-1510915933:21020..21125 | TCONS_00011467-exon-sc0000128-1510915933:21020..21125 | Clytia hemisphaerica | exon |
TCONS_00011467-exon-sc0000128-1510915933:20205..20414 | TCONS_00011467-exon-sc0000128-1510915933:20205..20414 | Clytia hemisphaerica | exon |
TCONS_00011467-exon-sc0000128-1510915933:15437..15517 | TCONS_00011467-exon-sc0000128-1510915933:15437..15517 | Clytia hemisphaerica | exon |
TCONS_00011467-exon-sc0000128-1510915933:14919..15121 | TCONS_00011467-exon-sc0000128-1510915933:14919..15121 | Clytia hemisphaerica | exon |
TCONS_00011467-exon-sc0000128-1510915933:14115..14677 | TCONS_00011467-exon-sc0000128-1510915933:14115..14677 | Clytia hemisphaerica | exon |
TCONS_00011467-exon-sc0000128-1491911889:21879..21979 | TCONS_00011467-exon-sc0000128-1491911889:21879..21979 | Clytia hemisphaerica | exon |
TCONS_00011467-exon-sc0000128-1491911889:21020..21125 | TCONS_00011467-exon-sc0000128-1491911889:21020..21125 | Clytia hemisphaerica | exon |
TCONS_00011467-exon-sc0000128-1491911889:20205..20414 | TCONS_00011467-exon-sc0000128-1491911889:20205..20414 | Clytia hemisphaerica | exon |
TCONS_00011467-exon-sc0000128-1491911889:15437..15517 | TCONS_00011467-exon-sc0000128-1491911889:15437..15517 | Clytia hemisphaerica | exon |
TCONS_00011467-exon-sc0000128-1491911889:14919..15121 | TCONS_00011467-exon-sc0000128-1491911889:14919..15121 | Clytia hemisphaerica | exon |
TCONS_00011467-exon-sc0000128-1491911889:14115..14677 | TCONS_00011467-exon-sc0000128-1491911889:14115..14677 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000128 | supercontig | sc0000128:14115..21979 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR012501 | Vps54_C |
Vocabulary: Biological Process
Term | Definition |
GO:0042147 | retrograde transport, endosome to Golgi |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0042147 |
retrograde transport, endosome to Golgi |
Blast
BLAST of TCONS_00011467 vs. Swiss-Prot (Human)
Match: VPS54 (Vacuolar protein sorting-associated protein 54 OS=Homo sapiens GN=VPS54 PE=1 SV=2) HSP 1 Score: 266.544 bits (680), Expect = 1.920e-79 Identity = 125/242 (51.65%), Postives = 174/242 (71.90%), Query Frame = 1
Query: 67 LFVQGQEFAVVGTLLILMKIIAEYCQCIDDVPMLVTDVMTRLCELLKIFNSRACQLVLGAGALQTVGLKTITAKHLMLVAQCLQVVILNINTIKNHFELRLTPKQYVMLTQFDQILKDYNNHRHELLCKITNLMEEIFNSYLSQYELKPPMPSKTMRNIVAQVKKLRETMAAILSEQQLEVLFRDVRRKFKDCLASKLADFGVSNDGGPQHGLVTSDVIFYSTSLNKLTGFKDLDHKCDGLW 792
L V+GQ++AVVGT+L+L++II EYCQC+D++P + TD++TRL +LLK FNSR+CQLVLGAGALQ VGLKTIT K+L L ++CLQ+++ I I+ HFE RL PKQY ML FD I KDY++H E+ K+ +M+ +F+ LS+YE+K P+PS RNI Q+ K+ E + +L E+Q ++LF + +K L +L+ V NDGGPQ+GLVT+DV FY+ +L L G KDLD +W
Sbjct: 732 LIVEGQQYAVVGTVLLLIRIILEYCQCVDNIPSVTTDMLTRLSDLLKYFNSRSCQLVLGAGALQVVGLKTITTKNLALSSRCLQLIVHYIPVIRAHFEARLPPKQYSMLRHFDHITKDYHDHIAEISAKLVAIMDSLFDKLLSKYEVKAPVPSACFRNICKQMTKMHEAIFDLLPEEQTQMLFLRINASYKLHLKKQLSHLNVINDGGPQNGLVTADVAFYTGNLQALKGLKDLDLNMAEIW 973
The following BLAST results are available for this feature:
|