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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011463 ID=TCONS_00011463|Name=TCONS_00011463|organism=Clytia hemisphaerica|type=transcript|length=900bp
AGCCAAAAACGAAAGTTTGTTTTTCAGTTTTGTGCATCCGCTGCTCTTTT
CGCCCAGCTAAACCGATTCATGACACGGGGAAATATTTCGGATTATACAT
ACGCCCTACAAATGGGCGGATTGGGGCGTGCTAGGAAATTTTACTTTGCT
AAGTGCTGTGTGTACACGTGTTCAATGTCCATGCTGTTGATTGGTCCagg
tttttttcttcagaaCAAAGGCAAAGGGAAATACCGAGAAGGCATCACAA
ACAAAATTGTGAAGGTTGTGGTGGAGTATACAACACTGCCAGCAAAACAA
CATGGCTGACGAAGAAAGTTCCTTCAACCCAAAGAATCCCACAAATTTCA
ATGTAGACGCTCAGCTTTTGCTAGTACCAGGAATACTTATAGTTCTTGGC
GTAGGTTACCTTGTTTATCGATTGCTACAAAGTTATAAATTGAAAGAGct
tgaaaaagaacaaaaacgcaagaagaaagaagaaaagaaaaaacgcTAGG
AGTAGgatgacaattgaataaaacaaatttttcgaaTTGAATGTTACAAT
TTGACTGGTGGGGATTTAGTTATTTTtctaattattattattattacaat
GATCGTATAAATGTAAATACCTTTTATTATTAATTATAACttcttttaat
ttaatataaaaagcaatttaAGTGTACTAACTTAAAATGGTCAGAGCTCT
GTTATTTTCGTTGCTAGAAAAAGTACGTAACGCCGTAGGTTTCTGCTTAT
CCTCCaacgaaaaaagtttcttgcaTTTATTTGGTTTTATTCAAAgttaa
tctttttatttttacttttgacgcagccatccgccaaattaaatttcctc
cAAAAAACTTTTCGGTCatcccaaaaatttttttatattacaAAAAGTCA Run BLAST on NCBI transcript from alignment at sc0000128:564906..567958+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011463 ID=TCONS_00011463|Name=TCONS_00011463|organism=Clytia hemisphaerica|type=transcript|length=3053bp|location=Sequence derived from alignment at sc0000128:564906..567958+ (Clytia hemisphaerica)
AGCCAAAAACGAAAGTTTGTTTTTCAGTTTTGTGCATCCGCTGCTCTTTT
CGCCCAGCTAAACCGATTCATGACACGGGGAAATATTTCGGATTATACAT
ACGCCCTACAAATGGGCGGATTGGGGCGTGCTAGGAAATTTTACTTTGCT
AAGTGCTGTGTGTACACGTGTTCAATGTCCATGCTGTTGATTGGTCCagg
tttttttcttcagaaCAAAGGCAAAGGGAAATACCGAGAAGGCATCACAA
ACAAAATTGTGAAGGTTGTGGTGGAGTATACAACACTGCCAGCAAAACAA
CATGGCTGACGAAGAAAGTTCCTTCAACCCAAAGAATCCCACAAATTTCA
ATGTAGACGCTCAGCTTTTGCTAGTACCAGGAATACTTATAGTTCTTGGC
GTAGGTAAGAAGTTTATTACATTATTAGTTGTTTGGGTGAAAAGGCTGCC
CCTTATTTTGGCTTGATGACTCATTCAGATTTAATATCTACTAGCTATCt
cataaaagtttttaaaagggATCATATTTATGCCAAAAGCTGCTAAAACG
CTCCAGACCGAGACAgccaaaatttgaatttaaaaatttatgaatttaca
ttttttttaccaGTGTAAGGCATTCAGGTTTGTGGCATAAATTTGGGGAC
CTTTTTTGGCACTCTATTAtaacaggaccctgccgacgcaccggacttaa
cgaacaccggacacgcgaaagtccggtgtaaaatgagaattttttttacc
accggacaatttctacaccggacttaaggaagtcggatgtccggtgtcgg
agaaggatattttttcccaccgaNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNatgcaacaccggacttattgcgtccggtgta
gcgaaaggatactttttgccaccggacaaatacaccggacagtccggtgc
gtcggcagggtcctattaTAACCTAACATGATAGGACCCTCCTGGCGCTC
TGGAAACTTCCAGAGTTTTCCggagcagctaaaaaaacactttttctctC
CGGAAAGTTTCAGAGTGCTTCCGGTGTTTCCAGAGCAAGTGACTTTTAAC
ACAttctaaaaaaaacgtttaaaaatatttgtctCCAGTTCTTTGGTCGA
AAAcaagaaatattgaaatatcgaaaaaatttaaaaacgtGAGGTTTCAC
TAccatgagatttttttttaatatgcaTGTGCGCAGTTAGTTTTTACATT
AATAGCACAGCTAGCGCTATCGTAATTATATCACTGATATCTTGCTATCC
GGAACACCAGAAATGCACTAGAATGTTCCGGAGTTCCCAGTGCAGACCAA
TCCCCGAAAATCGTGCTCCAGAATCTCCCGGTGTTCCGGAGCATGAAAAA
ACGGCCCTTTTTGCTCCAGACGTTTCCTAAGCGTCCGGAGGGTCCTGACA
TGATCATCACATACTAAAATTGTAGCTCTAAATTGCTTAGGAGAGCTATG
CCTATGAACTGTCCAAAATATAGTGAAGCAGTTCCACTCATTGcttctaa
tttcaacatccttctttaaagataggaataataggaagctcagaatcact
gatggactcctcaactgattgctcagcaaagaaaaatagtttcaatcAGT
CATTTCGACCTTTCTATTATTCcgatctctaaagaagggtgaccaaatta
gaagagggatgtcaacattggACCAACTTACGATAGCCTATAAAAACCTG
CATCTTTATGATCAGCCGTCATAAAGATAGTCAGTAGCTATACTATAGCT
AGGCAGTTGGGGTCATTTTGGTTgtatatattttcaattaaaagtggtcT
TTCATTGTTCACAACTTGTCCAAGTTANGTGGGATTTTATGAGATTTTTc
cctgaggcataagcatcctatagagaaggtctggagaaagtttcagctat
atattatttttttcctacaaacagcctgtacttTTGTAACACGGCCACAC
TANAGAAAAGTTTTTGGCTAAAACTTCTTATACTAGCTATGATTTTTAAT
CGCATCAAAATTGATCTTTTAGCAGCATCAAATGACCAGCATTATAACGC
GCAACTGCTTCACTTCTATTTTGGGCAtgtagtggggtcgtttagcataa
tttacagggaaaaaataatatatagctgaaactttctccagaccttccct
ataggatgcttatgcctcaggaaaaaaatcCCCTAGaatcatgttttgaa
aatttcaaaNTCTCCTGAATTCTTCTTTAAAGTACGTCTAAGATGATCAT
GCATAAGGCTCATAGTTTTTTCGTGCCCAATTAATAGCCTATTTTGGATA
TGCTAAGCTACTCGAGAGTGAAAAACTGATGAGTTTTGCTTTCTTTCTTG
CTTTCAGGTTACCTTGTTTATCGATTGCTACAAAGTTATAAATTGAAAGA
GcttgaaaaagaacaaaaacgcaagaagaaagaagaaaagaaaaaacgcT
AGGAGTAGgatgacaattgaataaaacaaatttttcgaaTTGAATGTTAC
AATTTGACTGGTGGGGATTTAGTTATTTTtctaattattattattattac
aatGATCGTATAAATGTAAATACCTTTTATTATTAATTATAACttctttt
aatttaatataaaaagcaatttaAGTGTACTAACTTAAAATGGTCAGAGC
TCTGTTATTTTCGTTGCTAGAAAAAGTACGTAACGCCGTAGGTTTCTGCT
TATCCTCCaacgaaaaaagtttcttgcaTTTATTTGGTTTTATTCAAAgt
taatctttttatttttacttttgacgcagccatccgccaaattaaatttc
ctccAAAAAACTTTTCGGTCatcccaaaaatttttttatattacaAAAAG
TCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011463-exon-sc0000128-1491911889:564906..565309 | TCONS_00011463-exon-sc0000128-1491911889:564906..565309 | Clytia hemisphaerica | exon |
| TCONS_00011463-exon-sc0000128-1510915933:564906..565309 | TCONS_00011463-exon-sc0000128-1510915933:564906..565309 | Clytia hemisphaerica | exon |
| TCONS_00011463-exon-sc0000128-1575043694:564906..565309 | TCONS_00011463-exon-sc0000128-1575043694:564906..565309 | Clytia hemisphaerica | exon |
| TCONS_00011463-exon-sc0000128-1491911889:567463..567958 | TCONS_00011463-exon-sc0000128-1491911889:567463..567958 | Clytia hemisphaerica | exon |
| TCONS_00011463-exon-sc0000128-1510915933:567463..567958 | TCONS_00011463-exon-sc0000128-1510915933:567463..567958 | Clytia hemisphaerica | exon |
| TCONS_00011463-exon-sc0000128-1575043694:567463..567958 | TCONS_00011463-exon-sc0000128-1575043694:567463..567958 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000128 | supercontig | sc0000128:564906..567958 + |
Blast
The following BLAST results are available for this feature:
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