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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011432 ID=TCONS_00011432|Name=TCONS_00011432|organism=Clytia hemisphaerica|type=transcript|length=3963bpRun BLAST on NCBI protein sequence of TCONS_00011432-protein >TCONS_00011432-protein ID=TCONS_00011432-protein|Name=TCONS_00011432-protein|organism=Clytia hemisphaerica|type=polypeptide|length=643bp MKADTEKVSQDEIISNTKNVLRGLETLKSEHDGLLVKLSSKQRNGDNGGTRun BLAST on NCBI transcript from alignment at sc0000128:56865..76903+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011432 ID=TCONS_00011432|Name=TCONS_00011432|organism=Clytia hemisphaerica|type=transcript|length=20039bp|location=Sequence derived from alignment at sc0000128:56865..76903+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000128:56865..76903+ >TCONS_00011432 ID=TCONS_00011432|Name=TCONS_00011432|organism=Clytia hemisphaerica|type=CDS|length=28980bp|location=Sequence derived from alignment at sc0000128:56865..76903+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00011432 vs. Swiss-Prot (Human)
Match: KLC1 (Kinesin light chain 1 OS=Homo sapiens GN=KLC1 PE=1 SV=2) HSP 1 Score: 572.392 bits (1474), Expect = 0.000e+0 Identity = 335/500 (67.00%), Postives = 392/500 (78.40%), Query Frame = 1
Query: 73 EKVSQDEIISNTKNVLRGLETLKSEHDGLLVKLSSKQRNGDNGGTQNKEGQDKVELIQKSLEKIELGIGEAQVMMALCNHLSQVEAEKQKLKAQVRRLCQENAWLREELSTTQTKLQQSEQANVQLEEEKKHLEFMNSLNVYEEGVQXXXXXXXXXXXXXXXXXTSDNPDD--DALXXXXXXXXXXNNAGVYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQSKYKEAANLLNDALAIREKTLGPDHPXXXXXXXXXXXXYGKRGKYKEAEPLCKRALQIREKVLGNNHPDVAKXXXXXXXXXXXXGKYDEVEMYYQRALEIYETQLGPDDPNVAKTKNNLASAYLKQGKYKAAEQLYKEVLTRAHEREFGK-DDEMR--------------RGKDNAPYGEYGGWHKAAKVDSPTVTTTLRNLSALYRRQGKYDAAETLEECANKSKKNPMDISRQTQLANILGSESN 1521
EK++QDEIIS TK V++GLE LK+EH+ +L L + N ++K +I+KSLE +ELG+ EAQVMMAL NHL+ VE+EKQKL+AQVRRLCQEN WLR+EL+ TQ KLQ+SEQ+ QLEEEKKHLEFMN L Y++ + + ++ + + ++ DD + Q S ++ G YEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQ+KYK+AANLLNDALAIREKTLG DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRAL+IREKVLG +HPDVAKQLNNLALLCQNQGKY+EVE YYQRALEIY+T+LGPDDPNVAKTKNNLAS YLKQGK+K AE LYKE+LTRAHEREFG DDE + + KD +GEYGGW+KA KVDSPTVTTTL+NL ALYRRQGK++AAETLEE A +S+K +D + ++A +L N
Sbjct: 17 EKLTQDEIISKTKQVIQGLEALKNEHNSILQSLLETLKCLKKDDESNL-VEEKSNMIRKSLEMLELGLSEAQVMMALSNHLNAVESEKQKLRAQVRRLCQENQWLRDELANTQQKLQKSEQSVAQLEEEKKHLEFMNQLKKYDDDISPSEDKDTDSTKEPLDDLFPNDEDDPGQGIQQQHSSAAAAAQQGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQGLDNVHKQRVAEVLNDPEN 515 The following BLAST results are available for this feature:
BLAST of TCONS_00011432 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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