TCONS_00011423 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011423
Unique NameTCONS_00011423
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length508

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011423 ID=TCONS_00011423|Name=TCONS_00011423|organism=Clytia hemisphaerica|type=transcript|length=508bp
TTAAAGGGTAAGGAATTAATTATTAGTAAAACTTCAGCAGGGTTAACACG
ATCAAGAAAAATAGAGTTCCTTATGCGATTTTTAAGATAATGTGAGAAGC
GACGATTAGTTGGACCAATTTTGGAGCGGACTGTATCTGCAATAGAAGTA
AAAAAGTCATTGAAGCCATTAGCAACAACGTTTGGATCGGAACTGAGATG
ACCATTGACACAAATAGATGAAGGAGAAGATTTGGATTCAGATCCTATGA
TATCTCTGATCCCTTCCCAGACCTTCAAAATGTTTGTAGCATGAACAGAG
AAAAAGCGGGAATAATGATTATTCTTACTCTTACGTGTAAGAGTAACTAT
AagatttttgtatgttttgtaTCTTTGATAGTAAAAAGATTTCATAATAG
GGTCCTTGGTTTGAATATATTTCCTAGAATAAAATTGACGTTGTGTGATC
GATTTAACAATTCCAGGAGTGATCCATGGTTTAGCCTGAGTTTTTTGTTG
GCGTTTAG
Run BLAST on NCBI

protein sequence of TCONS_00011423-protein

>TCONS_00011423-protein ID=TCONS_00011423-protein|Name=TCONS_00011423-protein|organism=Clytia hemisphaerica|type=polypeptide|length=168bp
KRQQKTQAKPWITPGIVKSITQRQFYSRKYIQTKDPIMKSFYYQRYKTYK
NLIVTLTRKSKNNHYSRFFSVHATNILKVWEGIRDIIGSESKSSPSSICV
NGHLSSDPNVVANGFNDFFTSIADTVRSKIGPTNRRFSHYLKNRIRNSIF
LDRVNPAEVLLIINSLPF
Run BLAST on NCBI

transcript from alignment at sc0000127:546148..546655

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011423 ID=TCONS_00011423|Name=TCONS_00011423|organism=Clytia hemisphaerica|type=transcript|length=508bp|location=Sequence derived from alignment at sc0000127:546148..546655 (Clytia hemisphaerica)
CTAAACGCCAACAAAAAACTCAGGCTAAACCATGGATCACTCCTGGAATT
GTTAAATCGATCACACAACGTCAATTTTATTCTAGGAAATATATTCAAAC
CAAGGACCCTATTATGAAATCTTTTTACTATCAAAGAtacaaaacataca
aaaatctTATAGTTACTCTTACACGTAAGAGTAAGAATAATCATTATTCC
CGCTTTTTCTCTGTTCATGCTACAAACATTTTGAAGGTCTGGGAAGGGAT
CAGAGATATCATAGGATCTGAATCCAAATCTTCTCCTTCATCTATTTGTG
TCAATGGTCATCTCAGTTCCGATCCAAACGTTGTTGCTAATGGCTTCAAT
GACTTTTTTACTTCTATTGCAGATACAGTCCGCTCCAAAATTGGTCCAAC
TAATCGTCGCTTCTCACATTATCTTAAAAATCGCATAAGGAACTCTATTT
TTCTTGATCGTGTTAACCCTGCTGAAGTTTTACTAATAATTAATTCCTTA
CCCTTTAA

Coding sequence (CDS) from alignment at sc0000127:546148..546655

>TCONS_00011423 ID=TCONS_00011423|Name=TCONS_00011423|organism=Clytia hemisphaerica|type=CDS|length=504bp|location=Sequence derived from alignment at sc0000127:546148..546655 (Clytia hemisphaerica)
AAACGCCAACAAAAAACTCAGGCTAAACCATGGATCACTCCTGGAATTGT
TAAATCGATCACACAACGTCAATTTTATTCTAGGAAATATATTCAAACCA
AGGACCCTATTATGAAATCTTTTTACTATCAAAGAtacaaaacatacaaa
aatctTATAGTTACTCTTACACGTAAGAGTAAGAATAATCATTATTCCCG
CTTTTTCTCTGTTCATGCTACAAACATTTTGAAGGTCTGGGAAGGGATCA
GAGATATCATAGGATCTGAATCCAAATCTTCTCCTTCATCTATTTGTGTC
AATGGTCATCTCAGTTCCGATCCAAACGTTGTTGCTAATGGCTTCAATGA
CTTTTTTACTTCTATTGCAGATACAGTCCGCTCCAAAATTGGTCCAACTA
ATCGTCGCTTCTCACATTATCTTAAAAATCGCATAAGGAACTCTATTTTT
CTTGATCGTGTTAACCCTGCTGAAGTTTTACTAATAATTAATTCCTTACC
CTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006409XLOC_006409Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011423-proteinTCONS_00011423-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011423-exon-sc0000127-1491911889:546148..546655TCONS_00011423-exon-sc0000127-1491911889:546148..546655Clytia hemisphaericaexon
TCONS_00011423-exon-sc0000127-1510915933:546148..546655TCONS_00011423-exon-sc0000127-1510915933:546148..546655Clytia hemisphaericaexon
TCONS_00011423-exon-sc0000127-1575043694:546148..546655TCONS_00011423-exon-sc0000127-1575043694:546148..546655Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000127supercontigsc0000127:546148..546655 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.593273	0.676937	0.844648	1.30595	1.66241	1.01155	1.50019	1.69802	0.645853	0.495405	0.236239	1.20585	0.453079	1.81152	0.503688	0.257851	0.381245	0.18881	0	0.395966	0.458888	0.671489	0.136047	0	0.852695	1.20998	0.325398	0.395089	0.395092	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011423 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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