TCONS_00011422 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011422
Unique NameTCONS_00011422
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length611

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011422 ID=TCONS_00011422|Name=TCONS_00011422|organism=Clytia hemisphaerica|type=transcript|length=611bp
gaaaaaatGTTATCAATAAGTGTCATTGAGTGGTCAGTAATTCGAGTCGG
AAGAAAAATATTACGTATAAGAAAGTGTGATCCAAGGTTGTTCAAATAAG
ATAAGATATTGGGGTCAGTAGAAGTATTcaaaagattaatgttgaaatcc
CCTAGTAGaagaatttgtttattttctttgttaattttattCAAGAGTGG
TTCAAGAAGCTTATTAAATTTGTCAAGTGAAAAAAGAGGGTGTTTATAAA
TGGATCCAACAATAGTATTAGGAGAATTTGGATGCAAGATTTCTGCAAAA
GTAGATTCAAGAAAGGTTGAGCAATATAGCATAGAGTCAAGATCTTTCCG
GGGTTCGAAAGTAAGATTGCTCGAAATGTAAAGCATAGTACCACCAACAG
AGGCCTCTGTAGGTGTGTGAATTGgttcttgaaaattttcaagattaaaG
TTAAAAGATGGTTTTTTCCCCTTCAAAATACGGGTCTCAGTGATTGCCAt
aacatcaaaattaaaattaagtttAGAAAGAAGAGTGGTTAAATCATCTA
TATGTAGAGCTAATGAAGCAATAATAAGGTGAAGAGACGAAAAAGAGAAA
GGCCCACTTTC
Run BLAST on NCBI

protein sequence of TCONS_00011422-protein

>TCONS_00011422-protein ID=TCONS_00011422-protein|Name=TCONS_00011422-protein|organism=Clytia hemisphaerica|type=polypeptide|length=203bp
ESGPFSFSSLHLIIASLALHIDDLTTLLSKLNFNFDVMAITETRILKGKK
PSFNFNLENFQEPIHTPTEASVGGTMLYISSNLTFEPRKDLDSMLYCSTF
LESTFAEILHPNSPNTIVGSIYKHPLFSLDKFNKLLEPLLNKINKENKQI
LLLGDFNINLLNTSTDPNILSYLNNLGSHFLIRNIFLPTRITDHSMTLID
NIF
Run BLAST on NCBI

transcript from alignment at sc0000127:543598..544208

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011422 ID=TCONS_00011422|Name=TCONS_00011422|organism=Clytia hemisphaerica|type=transcript|length=611bp|location=Sequence derived from alignment at sc0000127:543598..544208 (Clytia hemisphaerica)
GAAAGTGGGCCTTTCTCTTTTTCGTCTCTTCACCTTATTATTGCTTCATT
AGCTCTACATATAGATGATTTAACCACTCTTCTTTCTaaacttaatttta
attttgatgttaTGGCAATCACTGAGACCCGTATTTTGAAGGGGAAAAAA
CCATCTTTTAACtttaatcttgaaaattttcaagaacCAATTCACACACC
TACAGAGGCCTCTGTTGGTGGTACTATGCTTTACATTTCGAGCAATCTTA
CTTTCGAACCCCGGAAAGATCTTGACTCTATGCTATATTGCTCAACCTTT
CTTGAATCTACTTTTGCAGAAATCTTGCATCCAAATTCTCCTAATACTAT
TGTTGGATCCATTTATAAACACCCTCTTTTTTCACTTGACAAATTTAATA
AGCTTCTTGAACCACTCTTGaataaaattaacaaagaaaataaacaaatt
cttCTACTAGGggatttcaacattaatcttttgAATACTTCTACTGACCC
CAATATCTTATCTTATTTGAACAACCTTGGATCACACTTTCTTATACGTA
ATATTTTTCTTCCGACTCGAATTACTGACCACTCAATGACACTTATTGAT
AACattttttc

Coding sequence (CDS) from alignment at sc0000127:543598..544208

>TCONS_00011422 ID=TCONS_00011422|Name=TCONS_00011422|organism=Clytia hemisphaerica|type=CDS|length=609bp|location=Sequence derived from alignment at sc0000127:543598..544208 (Clytia hemisphaerica)
GAAAGTGGGCCTTTCTCTTTTTCGTCTCTTCACCTTATTATTGCTTCATT
AGCTCTACATATAGATGATTTAACCACTCTTCTTTCTaaacttaatttta
attttgatgttaTGGCAATCACTGAGACCCGTATTTTGAAGGGGAAAAAA
CCATCTTTTAACtttaatcttgaaaattttcaagaacCAATTCACACACC
TACAGAGGCCTCTGTTGGTGGTACTATGCTTTACATTTCGAGCAATCTTA
CTTTCGAACCCCGGAAAGATCTTGACTCTATGCTATATTGCTCAACCTTT
CTTGAATCTACTTTTGCAGAAATCTTGCATCCAAATTCTCCTAATACTAT
TGTTGGATCCATTTATAAACACCCTCTTTTTTCACTTGACAAATTTAATA
AGCTTCTTGAACCACTCTTGaataaaattaacaaagaaaataaacaaatt
cttCTACTAGGggatttcaacattaatcttttgAATACTTCTACTGACCC
CAATATCTTATCTTATTTGAACAACCTTGGATCACACTTTCTTATACGTA
ATATTTTTCTTCCGACTCGAATTACTGACCACTCAATGACACTTATTGAT
AACattttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006408XLOC_006408Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011422-exon-sc0000127-1491911889:543598..544208TCONS_00011422-exon-sc0000127-1491911889:543598..544208Clytia hemisphaericaexon
TCONS_00011422-exon-sc0000127-1510915933:543598..544208TCONS_00011422-exon-sc0000127-1510915933:543598..544208Clytia hemisphaericaexon
TCONS_00011422-exon-sc0000127-1575043694:543598..544208TCONS_00011422-exon-sc0000127-1575043694:543598..544208Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011422-proteinTCONS_00011422-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000127supercontigsc0000127:543598..544208 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.441265	0.172121	1.09917	1.46641	0.8331	1.12856	0.113463	0.424892	0.297477	0.368473	0	0.235104	0.117389	0.304773	0.200452	0	0	0.135811	0	0.0981706	0.341312	0.37458	0.101189	0.0919957	0	0.507391	0.48405	0.129148	0.195908	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005135Endo/exonuclease/phosphatase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011422 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top