TCONS_00011421 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011421
Unique NameTCONS_00011421
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length838

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011421 ID=TCONS_00011421|Name=TCONS_00011421|organism=Clytia hemisphaerica|type=transcript|length=838bp
AAAAAGATCTTCAAATAGACCTCATGGATGATAGAGAAATGTCTGGAAAT
GACTTGAAAAGTACCCTCTACAATGTGCATCGTTTTTCATATTGGAATGT
AAATACatgatattatttttattttatctatgtTCTATGATAACTTAGGA
TCACTCATGAAAATCCCATGTGAAATCACCTCATATAGGAAAGCTATCCT
AAACAAAAacagcttttttcttttttccactcGCTGTctaccatcttgaa
ttttgtttgttttgttgaatGCAAAAATTGTGCCTCTCGTACTTCCATTT
TTTGCTTGTTGTAAACACCCGtgttggaggtttggtgaaatggtagtcga
attgccgtcccatgttttgtcagatagtcccaagtaaGAGCCATTGACGG
TAGCAATCTTAAATCTAACTTTTGTAAATGATCAATCAAAGGTTTtagta
tcattttatcataAACCCAAGCATCAAAGTGCCAAATTTCAGAACTTGCA
TTTTCTCTATGAAagtcaggccatattttagaaaggcagggcagcgtccg
ttggtggtaaaaaagggcactttttctcgTGTTTctccactaaaaaggct
gtttttaccaaaattttagtgatttcaggaggggcagcgtcTGATAACCG
GGGGCAGCGTCTGATAACCGGATgctaaaagggcatgaaaaacaGCCTGA
AAGTGTTACCAGTGAAAGAATAACAGAATTTGATTAACTGTGTTTTCAAC
AGTCATAAGGATCTGGCCTCTTagtgccttgcacgacaggcggctgtaaa
atcccacccttcatatatttgtttcaatccgtgatccg
Run BLAST on NCBI

transcript from alignment at sc0000127:496904..497741

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011421 ID=TCONS_00011421|Name=TCONS_00011421|organism=Clytia hemisphaerica|type=transcript|length=838bp|location=Sequence derived from alignment at sc0000127:496904..497741 (Clytia hemisphaerica)
cggatcacggattgaaacaaatatatgaagggtgggattttacagccgcc
tgtcgtgcaaggcactAAGAGGCCAGATCCTTATGACTGTTGAAAACACA
GTTAATCAAATTCTGTTATTCTTTCACTGGTAACACTTTCAGGCtgtttt
tcatgcccttttagcATCCGGTTATCAGACGCTGCCCCCGGTTATCAgac
gctgcccctcctgaaatcactaaaattttggtaaaaacagcctttttagt
ggagAAACAcgagaaaaagtgcccttttttaccaccaacggacgctgccc
tgcctttctaaaatatggcctgactTTCATAGAGAAAATGCAAGTTCTGA
AATTTGGCACTTTGATGCTTGGGTTtatgataaaatgatactaAAACCTT
TGATTGATCATTTACAAAAGTTAGATTTAAGATTGCTACCGTCAATGGCT
Cttacttgggactatctgacaaaacatgggacggcaattcgactaccatt
tcaccaaacctccaacaCGGGTGTTTACAACAAGCAAAAAATGGAAGTAC
GAGAGGCACAATTTTTGCattcaacaaaacaaacaaaattcaagatggta
gACAGCgagtggaaaaaagaaaaaagctgtTTTTGTTTAGGATAGCTTTC
CTATATGAGGTGATTTCACATGGGATTTTCATGAGTGATCCTAAGTTATC
ATAGAacatagataaaataaaaataatatcatGTATTTACATTCCAATAT
GAAAAACGATGCACATTGTAGAGGGTACTTTTCAAGTCATTTCCAGACAT
TTCTCTATCATCCATGAGGTCTATTTGAAGATCTTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006407XLOC_006407Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011421-exon-sc0000127-1491911889:496904..497741TCONS_00011421-exon-sc0000127-1491911889:496904..497741Clytia hemisphaericaexon
TCONS_00011421-exon-sc0000127-1510915933:496904..497741TCONS_00011421-exon-sc0000127-1510915933:496904..497741Clytia hemisphaericaexon
TCONS_00011421-exon-sc0000127-1575043694:496904..497741TCONS_00011421-exon-sc0000127-1575043694:496904..497741Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000127supercontigsc0000127:496904..497741 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.3483	2.2638	3.66569	4.63271	4.18329	4.34441	2.68609	3.66771	1.79178	2.2719	1.88656	2.15014	2.25441	2.53579	1.84648	2.06134	2.04084	1.34749	2.58658	1.91159	1.68107	2.87354	0.433815	0.853295	1.39368	2.21772	2.11514	1.73567	1.19348	0.789988
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011421 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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