TCONS_00011419 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011419
Unique NameTCONS_00011419
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length316

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011419 ID=TCONS_00011419|Name=TCONS_00011419|organism=Clytia hemisphaerica|type=transcript|length=316bp
CAAGCCAAGTATTATACATATTTTGAAAGATACAAAAACCACACTAAAAT
TGAACTtgactttcctaattttttgccCTACCTTacaataacgaaaatat
ttatatttatatgaTATAAGAAAGTCGATATTTGGGCAGAAATCAGCCCT
AATTTTCCATTATAATCTATTGAACATAAAATAAGTCAATAAACAAAGAC
ATTATTCAAGTCCAAACGAACGATTAAGGGATTTGCAAGGCCATCCTACT
TCAGATTAGAGAGCTTTTAAGTGAAGTTTAGATCAAGTTAGCACCTACGT
Acttacaaaaatctaa
Run BLAST on NCBI

transcript from alignment at sc0000127:451451..451766

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011419 ID=TCONS_00011419|Name=TCONS_00011419|organism=Clytia hemisphaerica|type=transcript|length=316bp|location=Sequence derived from alignment at sc0000127:451451..451766 (Clytia hemisphaerica)
ttagatttttgtaagTACGTAGGTGCTAACTTGATCTAAACTTCACTTAA
AAGCTCTCTAATCTGAAGTAGGATGGCCTTGCAAATCCCTTAATCGTTCG
TTTGGACTTGAATAATGTCTTTGTTTATTGACTTATTTTATGTTCAATAG
ATTATAATGGAAAATTAGGGCTGATTTCTGCCCAAATATCGACTTTCTTA
TAtcatataaatataaatattttcgttattgtAAGGTAGggcaaaaaatt
aggaaagtcaAGTTCAATTTTAGTGTGGTTTTTGTATCTTTCAAAATATG
TATAATACTTGGCTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006405XLOC_006405Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011419-exon-sc0000127-1491911889:451451..451766TCONS_00011419-exon-sc0000127-1491911889:451451..451766Clytia hemisphaericaexon
TCONS_00011419-exon-sc0000127-1510915933:451451..451766TCONS_00011419-exon-sc0000127-1510915933:451451..451766Clytia hemisphaericaexon
TCONS_00011419-exon-sc0000127-1575043694:451451..451766TCONS_00011419-exon-sc0000127-1575043694:451451..451766Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000127supercontigsc0000127:451451..451766 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.326	1.61632	0.375341	0.367213	0.894092	0	0	1.596	0.279348	1.03805	1.00756	0.220777	0.44094	0.22896	0.188236	0	2.98627	0	0	0	1.92308	2.81403	1.14027	0.345558	0	0	0.454552	0	0.367939	0.749743
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011419 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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