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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011407 ID=TCONS_00011407|Name=TCONS_00011407|organism=Clytia hemisphaerica|type=transcript|length=1371bp
TTTAGATCTTATTAACAAACTCAGCTTGGTACTTTCTCTATAAAATGTTA
CAAGTTGaatcattgaaaaatatcattGTCACTAAAATAATAAAAGATAT
AAAAGCTGCTAATGCATTGACTTATTTTGTCGGTGCTTCAAAATATGTTG
GAAAGTATACTCGAAGAATCTGTGACAAATCAGCTAAAAGGATTTCAATT
AAAAAGCATTCAAATAGTTTAGTTTTTAAACAGATGCAATGGAAACACTT
GAAAGCTTTGTTTACCAACCCATACTTAAATTCATCTGAAGATGATAAAT
ACAAAGCAGCAATGAAATGGCTCAACTATGATCAATCTAGAGAACAATAT
TTTGATGAGCTCATGTACCTTTTCTGTTGGCATCAACTCCAATCTTATAA
TATCAGATTCAAAGTTGATGAAAGATATCAAGAGAGGGGCATCAAAAGAA
AATATGACGAAGCTTGCGGTGGAAATCTTCAATGTCCTAAAAATGGTGCG
ATACAACCAACCACTAACGAGGAACTGTCTAATTTGTTTGGAGACCGTTG
TATACAACTAAAAGACAATGCTCATTTGATGAATACTTTTACACATACAT
ATGGTGTTTTTAAACGGAAGATCCCAAAGGAAATGTTGAAGTTAAAGATA
TCTATCAAAGGTAACGGTAGTGAATCATCATGGAAAGCAACACAAGATCG
AGTAACCAATTTTGAGAACCATATAAATCATGGTGACCACCACTTGGAAG
TCTTTTACCAAAATGAGTATAATGCTGAACATGTGATAATTGTGACTGGC
AATTACACAATCAGAGATAATTGTGCTGATTTCACATGTCTCCCAAAAGT
CAGATTGATTATTGATCCAGATCGTTGGGCAAGATATGCTGATGATCCTT
TACCGAATCCAAAATATTTACATAGATTTCAACCAGAAAAAGATTTGAAG
AGAATGTACAGATATCCGTACATGTGTGTAATTGGTGCAAGTGAAGTCGA
CATGGACGATGCTGTCCGATTTGTATGTTCGCTTAACACTACAGAAGATG
TGTGTTGTCGCAAATTGAGCAGTGGCACTAGGTACATTGACATTTGGTCA
GCCTCATTGGAGAGTGCTAGGCGCAAGCATTTTGGATACGATGATTAAAT
GAAAGGTTTCGTTTGTTAGTAACAAAACAGAAATTCCATGATGGTTTTAA
ACAAAGAAAAGGGTAGAAAGTTTGAATTTAAAGGGAAACATGATTTTGTT
CATATTTGGTTTACTTATTGTCTTTTGTTacattttcattattattaatt
ttaaaaagtatatAATAGCTTTTATGTCTTCATTTTATAAGTGTTAGTTT
GAAATTGAGAAGTTGATCCAG Run BLAST on NCBI protein sequence of TCONS_00011407-protein >TCONS_00011407-protein ID=TCONS_00011407-protein|Name=TCONS_00011407-protein|organism=Clytia hemisphaerica|type=polypeptide|length=367bp
MLQVESLKNIIVTKIIKDIKAANALTYFVGASKYVGKYTRRICDKSAKRI
SIKKHSNSLVFKQMQWKHLKALFTNPYLNSSEDDKYKAAMKWLNYDQSRE
QYFDELMYLFCWHQLQSYNIRFKVDERYQERGIKRKYDEACGGNLQCPKN
GAIQPTTNEELSNLFGDRCIQLKDNAHLMNTFTHTYGVFKRKIPKEMLKL
KISIKGNGSESSWKATQDRVTNFENHINHGDHHLEVFYQNEYNAEHVIIV
TGNYTIRDNCADFTCLPKVRLIIDPDRWARYADDPLPNPKYLHRFQPEKD
LKRMYRYPYMCVIGASEVDMDDAVRFVCSLNTTEDVCCRKLSSGTRYIDI
WSASLESARRKHFGYDD Run BLAST on NCBI transcript from alignment at sc0000127:28202..29572 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011407 ID=TCONS_00011407|Name=TCONS_00011407|organism=Clytia hemisphaerica|type=transcript|length=1371bp|location=Sequence derived from alignment at sc0000127:28202..29572 (Clytia hemisphaerica)
CTGGATCAACTTCTCAATTTCAAACTAACACTTATAAAATGAAGACATAA
AAGCTATTatatactttttaaaattaataataatgaaaatgtAACAAAAG
ACAATAAGTAAACCAAATATGAACAAAATCATGTTTCCCTTTAAATTCAA
ACTTTCTACCCTTTTCTTTGTTTAAAACCATCATGGAATTTCTGTTTTGT
TACTAACAAACGAAACCTTTCATTTAATCATCGTATCCAAAATGCTTGCG
CCTAGCACTCTCCAATGAGGCTGACCAAATGTCAATGTACCTAGTGCCAC
TGCTCAATTTGCGACAACACACATCTTCTGTAGTGTTAAGCGAACATACA
AATCGGACAGCATCGTCCATGTCGACTTCACTTGCACCAATTACACACAT
GTACGGATATCTGTACATTCTCTTCAAATCTTTTTCTGGTTGAAATCTAT
GTAAATATTTTGGATTCGGTAAAGGATCATCAGCATATCTTGCCCAACGA
TCTGGATCAATAATCAATCTGACTTTTGGGAGACATGTGAAATCAGCACA
ATTATCTCTGATTGTGTAATTGCCAGTCACAATTATCACATGTTCAGCAT
TATACTCATTTTGGTAAAAGACTTCCAAGTGGTGGTCACCATGATTTATA
TGGTTCTCAAAATTGGTTACTCGATCTTGTGTTGCTTTCCATGATGATTC
ACTACCGTTACCTTTGATAGATATCTTTAACTTCAACATTTCCTTTGGGA
TCTTCCGTTTAAAAACACCATATGTATGTGTAAAAGTATTCATCAAATGA
GCATTGTCTTTTAGTTGTATACAACGGTCTCCAAACAAATTAGACAGTTC
CTCGTTAGTGGTTGGTTGTATCGCACCATTTTTAGGACATTGAAGATTTC
CACCGCAAGCTTCGTCATATTTTCTTTTGATGCCCCTCTCTTGATATCTT
TCATCAACTTTGAATCTGATATTATAAGATTGGAGTTGATGCCAACAGAA
AAGGTACATGAGCTCATCAAAATATTGTTCTCTAGATTGATCATAGTTGA
GCCATTTCATTGCTGCTTTGTATTTATCATCTTCAGATGAATTTAAGTAT
GGGTTGGTAAACAAAGCTTTCAAGTGTTTCCATTGCATCTGTTTAAAAAC
TAAACTATTTGAATGCTTTTTAATTGAAATCCTTTTAGCTGATTTGTCAC
AGATTCTTCGAGTATACTTTCCAACATATTTTGAAGCACCGACAAAATAA
GTCAATGCATTAGCAGCTTTTATATCTTTTATTATTTTAGTGACaatgat
atttttcaatgattCAACTTGTAACATTTTATAGAGAAAGTACCAAGCTG
AGTTTGTTAATAAGATCTAAA Coding sequence (CDS) from alignment at sc0000127:28202..29572 >TCONS_00011407 ID=TCONS_00011407|Name=TCONS_00011407|organism=Clytia hemisphaerica|type=CDS|length=1104bp|location=Sequence derived from alignment at sc0000127:28202..29572 (Clytia hemisphaerica)
TTAATCATCGTATCCAAAATGCTTGCGCCTAGCACTCTCCAATGAGGCTG
ACCAAATGTCAATGTACCTAGTGCCACTGCTCAATTTGCGACAACACACA
TCTTCTGTAGTGTTAAGCGAACATACAAATCGGACAGCATCGTCCATGTC
GACTTCACTTGCACCAATTACACACATGTACGGATATCTGTACATTCTCT
TCAAATCTTTTTCTGGTTGAAATCTATGTAAATATTTTGGATTCGGTAAA
GGATCATCAGCATATCTTGCCCAACGATCTGGATCAATAATCAATCTGAC
TTTTGGGAGACATGTGAAATCAGCACAATTATCTCTGATTGTGTAATTGC
CAGTCACAATTATCACATGTTCAGCATTATACTCATTTTGGTAAAAGACT
TCCAAGTGGTGGTCACCATGATTTATATGGTTCTCAAAATTGGTTACTCG
ATCTTGTGTTGCTTTCCATGATGATTCACTACCGTTACCTTTGATAGATA
TCTTTAACTTCAACATTTCCTTTGGGATCTTCCGTTTAAAAACACCATAT
GTATGTGTAAAAGTATTCATCAAATGAGCATTGTCTTTTAGTTGTATACA
ACGGTCTCCAAACAAATTAGACAGTTCCTCGTTAGTGGTTGGTTGTATCG
CACCATTTTTAGGACATTGAAGATTTCCACCGCAAGCTTCGTCATATTTT
CTTTTGATGCCCCTCTCTTGATATCTTTCATCAACTTTGAATCTGATATT
ATAAGATTGGAGTTGATGCCAACAGAAAAGGTACATGAGCTCATCAAAAT
ATTGTTCTCTAGATTGATCATAGTTGAGCCATTTCATTGCTGCTTTGTAT
TTATCATCTTCAGATGAATTTAAGTATGGGTTGGTAAACAAAGCTTTCAA
GTGTTTCCATTGCATCTGTTTAAAAACTAAACTATTTGAATGCTTTTTAA
TTGAAATCCTTTTAGCTGATTTGTCACAGATTCTTCGAGTATACTTTCCA
ACATATTTTGAAGCACCGACAAAATAAGTCAATGCATTAGCAGCTTTTAT
ATCTTTTATTATTTTAGTGACaatgatatttttcaatgattCAACTTGTA
ACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011407-exon-sc0000127-1491911889:28202..29572 | TCONS_00011407-exon-sc0000127-1491911889:28202..29572 | Clytia hemisphaerica | exon |
| TCONS_00011407-exon-sc0000127-1510915933:28202..29572 | TCONS_00011407-exon-sc0000127-1510915933:28202..29572 | Clytia hemisphaerica | exon |
| TCONS_00011407-exon-sc0000127-1575043694:28202..29572 | TCONS_00011407-exon-sc0000127-1575043694:28202..29572 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000127 | supercontig | sc0000127:28202..29572 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR011705 | BACK |
Blast
The following BLAST results are available for this feature:
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