TCONS_00011406 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011406
Unique NameTCONS_00011406
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2613

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011406 ID=TCONS_00011406|Name=TCONS_00011406|organism=Clytia hemisphaerica|type=transcript|length=2613bp
GTGTGCTTGCAAAAATAGAAAGAAGGGGGACTGGGGTCTAGATtcattaa
aaaaaggggtaGTGGCTTAATTAAATGATTTGGCGATTCAATCCTTCTCT
TCTAACTTGTCAAGGTAAACGCTTTTAGCGAAAGGTGGTGTTGAAAGACT
TTGTTAACAAATTCAATAAATATGTCTGGAGAAGAAGGCGAGTCTAAAGT
ATCGACTTACGAGACTTATGTCTCCACACCAAGCGAGAGAACCGTTTTGC
TTGTGAAAGCACGCGGCGAAACATGGCGAGACAAAATCGGGCTTTACGAG
CCAACAGAACCAAATTTCTGGCGATACGTTTTTGCTGAATTCGTTTACAC
GTTAATATTTACAATTATTGCGTGTGGATGTAGTCTTAACTTGGGAGAAC
CAAGGTCTGATTTACACCAAGCCGTTTGCGTTGGAGGGATTGTGGCTGTT
TTGATTACAGTTTCAGCTGAGAAATTGGGATATTTTAACCCAGCCTTGTC
ATTTGGGTTGTTGGTTGCCGGTGAAATTAAATTCGTTCGATTTTTTGTTT
ACGCTGCTGTTCAAGTCGCTGGCAGCTGTGCCGGAGCTGGTCTTCTCTAT
CTCTACACACCATCCAATGTCCGTGGTCATCTGGGAACATTATCCATTCA
CGATGATCTGTTAGTTGGAGTTGCATTCGTGGTCGAACTCACTTTAACTT
TCATTGTCATGTTAGTTATCATTGCAGCAAGGGATCCGGACAACCAATTC
TCTTTGTTACAATCTAACATGGTCGTTGGTCTATCTGTAGCTGTCGCAAT
GTTGATGGGAATGCCTTTCACTGGTGCTGGAGTCAATCCTATTCGTGCTT
TTGGACCTGCAGCTGTTACTGGAAATCTTGTCCACGAACACTGGGTTTAC
TGGGTCGGTCCATTGGTAGGAGCATTATGTGCGTCTTTGTCTTACAAATA
CATTTTCAAACTTGGTGAAGAAAAACCCAAAGAAAAAGCACAACCTATGC
CAACTGTTCATATGAAAATCAAAAGCACTTCAAACTCAAGTGTCTAAATG
CTGACTATGCTGATGGCAGCTAATGATAATATTTTCTGATCGgtaaattt
ggctaaaacatgcGGGTTAACTGTTTTCAAATGACTTTATCAATATTAGA
AGCCCAAAGAATATTGGCAATTCGTCATCCAAGACCCTTGTGGTAATAGG
GTAAGAAAGTGAAAGGAGTATTTCCAAGTAttaaaccattgagtttcaat
ccCGAGGGGCTCATGACGAGACTCCTGGATAGGAAacgaaaccacttatt
tccaatccagaacgtccgcgcgtagtttttacacaaacgccggattgaaa
ctaaaatctatcgctagatttcaaaaattgtagTCCTTCAAAACAAAGGA
ACGGCTATATACAATCCGTCgaattacggcgcgttctatgcgcgttttgg
atgggaaataagtggcttcagtCCTCGAAATCAAGAGTCGCCAAATCTAA
TTTCCACCGAATCCGATTAATTTTATTATAGACCAAATAGAAACTCGCAT
TGTTCTTTTAAATAATATTCCAAACTAGTTTTGAAATCTACAAACTTTTT
GTCTTTGTTCATTgttcttttattcaaaagtcttagATACCTTATCTTAA
TTATTTCTATTTGTattgttttaaatttatttgtgtatttatataattta
aaacatcaaaatctttatttaaaaataataaaatctatACTAAAAACCCC
ACGTTCAACCTTAATTACTCCATTTCAAACTAACCCCATATAAGCATAAA
ACTTCAAAGGCAGAacacaaaacacaaaaacaaaaacaattatacAAGTA
CTCGAATTTTTTCAGCCACTtttttctaactcaaactagTGGTCGGAGTT
CCATTGTTCCGATCGAACCCTCTGAACTTTTTAATTATCGAGAAAATGGA
GTGTCAACCTTAATTATCACCTCAGCACTCGAATTTCACAAACacaaatt
cgattgtcaaactgTTAAAGTATAAGGGTTAAGAGTAAGACTCACCTAAT
TTTGAGTATAATGTCGGACATCTTTAAGACCAATATCGATGGAAGACCAG
GGCAGCTACTCGCAAAGGAATAATAGTGCTCTTCTATAAAATATAGAGGT
ATTTTCAGCATTAGAGTCCACTTTACAACACACATGACAATTTTCTAGCC
CTAGGTTAAAGATTTTGTCTCAACATTTTTGGAAATGTCGCTTGAAATTA
TGCTCCTGCAAAAAAAATCACTAGAACTGGATCAATAAGGCTTATAAGGC
AAAGTTTTTAGTTCCAGTTTCGAGATTTCAAACAGTATACAGTAGCTTAT
ATTCAAAATCTACGTGAAATTTGGGACAGGAAAACCTCTCTTTGTACTGC
AAACACAAATCTCTCTAAGAATGAAGATTAAATTTATGAAATACATACTG
TCTCACATAAATACTCTCCATATGACTCATCTTTCAAACGGGCGACACAC
AACACAATGAAGAAACCAACAACAATGAAAGTTCTGGTTCTTCAGTCGGC
TTGATCTTCTTCCAATTATTACTATTAGTtgttattttaaatttcaattt
ttctatatctaaa
Run BLAST on NCBI

protein sequence of TCONS_00011406-protein

>TCONS_00011406-protein ID=TCONS_00011406-protein|Name=TCONS_00011406-protein|organism=Clytia hemisphaerica|type=polypeptide|length=291bp
MSGEEGESKVSTYETYVSTPSERTVLLVKARGETWRDKIGLYEPTEPNFW
RYVFAEFVYTLIFTIIACGCSLNLGEPRSDLHQAVCVGGIVAVLITVSAE
KLGYFNPALSFGLLVAGEIKFVRFFVYAAVQVAGSCAGAGLLYLYTPSNV
RGHLGTLSIHDDLLVGVAFVVELTLTFIVMLVIIAARDPDNQFSLLQSNM
VVGLSVAVAMLMGMPFTGAGVNPIRAFGPAAVTGNLVHEHWVYWVGPLVG
ALCASLSYKYIFKLGEEKPKEKAQPMPTVHMKIKSTSNSSV
Run BLAST on NCBI

transcript from alignment at sc0000127:520584..525291-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011406 ID=TCONS_00011406|Name=TCONS_00011406|organism=Clytia hemisphaerica|type=transcript|length=4708bp|location=Sequence derived from alignment at sc0000127:520584..525291- (Clytia hemisphaerica)
GTGTGCTTGCAAAAATAGAAAGAAGGGGGACTGGGGTCTAGATTCATTAA
AAAAAGGGGTAGTGGCTTAATTAAATGATTTGGCGATTCAATCCTTCTCT
TCTAACTTGTCAAGGTAAACGCTTTTAGCGAAAGGTGGTGTTGAAAGACT
TTGTTAACAAATTCAATAAATATGTCTGGAGAAGAAGGCGAGTCTAAAGT
ATCGACTTACGAGACTTATGTCTCCACACCAAGCGAGAGAACCGTTTTGC
TTGTGAAAGCACGCGGCGAAACATGGCGAGACAAAATCGGGCTTTACGAG
CCAACAGAACCAAATTTCTGGCGATACGTTTTTGCTGAATTCGTTTACAC
GTTAATATTTACAATTATTGCGTGTGGATGTAGTCTTAACTTGGGAGAAC
CAAGGTCTGATTTACACCAAGCCGTTTGCGTTGGAGGGATTGTGGCTGTT
TTGATTACAGTTTCAGCTGAGAAATTGGGATATTTTAACCCAGCCTTGTC
ATTTGGGTTGTTGGTTGCCGGTGAAATTAAATTCGTTCGATTTTTTGTTT
ACGCTGCTGTTCAAGTCGCTGGCAGTAAGTATATATCATTCCCTTTTGAG
AATTTATGTTTTCACCAATGTTTTAGGAGACCAGGCAGGCTTTGTGTTTG
ACATCAAACTTTACAAACTTAAGTTCAAACTACTGTTGATCTGTGGACAT
CTGATTGTTCTTATTTCAAGGAGCTATACAGGTACCATTTTTTCAGAATA
ACTACAGGAGGGGTGGGTTTGCAGGGTTGTCGGGGGTGATGGTTTCACTA
CAGGCTAGTCTGATCACTTTTTTCAGAACAAAATGAAAATCTACTAATTA
AGTGATATTTTATTTAAAAAAATACTTACTGTAGGCAAAAGAGGAGCTAA
TATTCAAAAACTCTTCCGTCGTCACTATAATATACATCATTCAATTATCA
TAGTGGCATCTGAAATAGCATAGGACCTACAAAGTCCTTCTGCAAAGACA
TTTGGTTGCGGTACGGAAGATTATGGGTATGATCCTTAGCCGGAGAGGTC
CCATGCCTTTCTCTATCTCCTGTAGATATCTATCGCAAGGGAAAGCAGTC
TCAAATTTCATAGATCTTACGTCAATCTGACTTTAAATGAATAAGGATCA
CATTTTGGTCAATTTTATGTAACTTCTCCTTATTTGAAATAGCAGTAACA
AAATACAACAAGACTTACTTGGTATTATTGTGATTGAATGTCAAAAAAAG
TTCTTGGCATGTATACGGACATGTTGAATCATGAATTTTTACATCCAATT
TAAACCTTTTAAAAGACGCTTGGTAACTTGATCAGGCCTGGAAAAAATGT
AAAGAAATTTAAGTTTCAATTTTCGCCTTTTCAAGTTTATACGTGCAACC
GTGCAAAGTCAATAATGAGGTTTATCTTAAAGATCATGAAAAGTACATAA
CGAAAACAGTGTCGTTTTTCAAAATTTATCCCCGGGAATTAAATCCCGAA
AGGGGTCCGAAATGACCCAAACTATTTCATGATTTCGTCATCAACTACCC
AGTAAGACATTTTTAAACTAGACTCAAAAGATTGGCATTAAAACGTACTA
TATGGTCTCAATGGCATTGCTGACTCAGCTAAAATATCGTTTTGTGCTGA
CTCAGAAAATTAATCTTAAAACCTAAATGATTATCTTTTTCAAGGTTTGG
GCAATTTTTGAGCAAAACTTAAGTCTCCACACTCTTTCTAGGGTTAATAG
GTGTATAAACTAACTTTAATCGAAATCTATTTTCTACCCTGTTCTACCAG
GCTGTGCCGGAGCTGGTCTTCTCTATCTCTACACACCATCCAATGTCCGT
GGTCATCTGGGAACATTATCCATTCACGATGATCTGTTAGTTGGAGTTGC
ATTCGTGGTCGAACTCACTTTAACTTTCATTGTCATGTTAGTTATCATTG
CAGCAAGGGATCCGGACAACCAATTCTCTTTGTTACAATCTAACATGGTC
GTTGGTCTATCTGTAGCTGTCGCAATGTTGATGGGAGTAAGTGGATAAAC
ATACAGTTGACGCTCTCTAAATCGACGTTCTACTATTCGACAGGCTCCCT
TATTCAATGGAATTGAAAGTCCCCGTCAATAAGAAACTCTCATAAACGAT
GCTCCCTTATTCGATAAAGCTCCCTTATTCGATAAAGCTCCCTTATTCGA
TAAAGCTCCCTTATTCGTTAAAGCTCCCTTATTCCCCTTGAATATCAAAT
TAGAGAGCGTCAACTGTACTACCACAGCTTAGAGTTCAAAAGTCAAAGAC
TCTAGAAACTATAACCGAAAGTTATACGTGTGCTCTTCTTGAGACTCCAA
CGCAAAATTTTGATAATGTCAGAAAAACGATTTTAATTTCAAGCAATTGT
AATCAATGCCTTTCCCATAAAACGCACTATAAGCTACCCCAGCTGGCACA
CAAAGTTCTTTCAACGTCAATTTAATGTTCACAACGTCCATTTAACGTTA
GATGAACGTTGAAACAACGTTGTGTGTCAGCTGGGACAGGTATCTCTTAA
GAAGTAACTATTGTATGAAACTATTTAATCTCCCTTGCGTAACCAAACAC
TTGATAACTATCTTTTAGATGCCTTTCACTGGTGCTGGAGTCAATCCTAT
TCGTGCTTTTGGACCTGCAGCTGTTACTGGAAATCTTGTCCACGAACACT
GGGTAAGGCTTTTAAACACGTTAACCAGTTAAAAAACATCGAGAGACTTT
CAAAAACTCTAGTAGTACTGAGCTATCCACATAAACTGGACTTCATCGAT
TAATCTATAGGATCCAGAGCGTTCTAAATCTAGATTTAAACACCATGATA
GGATCCTAATTCACAAAGAAAGATTCTCTCAGGGCATTTTTTTCAAATAA
AACGTTAATTGAAATCATGCCAATAGGGTACAGGTACTTCAACTGACCTC
AGCTAGGAAGATTTACTCATTCCTATCTTTCCTTGACAGGTTTACTGGGT
CGGTCCATTGGTAGGAGCATTATGTGCGTCTTTGTCTTACAAATACATTT
TCAAACTTGGTGAAGAAAAACCCAAAGAAAAAGCACAACCTATGCCAACT
GTTCATATGAAAATCAAAAGCACTTCAAACTCAAGTGTCTAAATGCTGAC
TATGCTGATGGCAGCTAATGATAATATTTTCTGATCGGTAAATTTGGCTA
AAACATGCGGGTTAACTGTTTTCAAATGACTTTATCAATATTAGAAGCCC
AAAGAATATTGGCAATTCGTCATCCAAGACCCTTGTGGTAATAGGGTAAG
AAAGTGAAAGGAGTATTTCCAAGTATTAAACCATTGAGTTTCAATCCCGA
GGGGCTCATGACGAGACTCCTGGATAGGAAACGAAACCACTTATTTCCAA
TCCAGAACGTCCGCGCGTAGTTTTTACACAAACGCCGGATTGAAACTAAA
ATCTATCGCTAGATTTCAAAAATTGTAGTCCTTCAAAACAAAGGAACGGC
TATATACAATCCGTCGAATTACGGCGCGTTCTATGCGCGTTTTGGATGGG
AAATAAGTGGCTTCAGTCCTCGAAATCAAGAGTCGCCAAATCTAATTTCC
ACCGAATCCGATTAATTTTATTATAGACCAAATAGAAACTCGCATTGTTC
TTTTAAATAATATTCCAAACTAGTTTTGAAATCTACAAACTTTTTGTCTT
TGTTCATTGTTCTTTTATTCAAAAGTCTTAGATACCTTATCTTAATTATT
TCTATTTGTATTGTTTTAAATTTATTTGTGTATTTATATAATTTAAAACA
TCAAAATCTTTATTTAAAAATAATAAAATCTATACTAAAAACCCCACGTT
CAACCTTAATTACTCCATTTCAAACTAACCCCATATAAGCATAAAACTTC
AAAGGCAGAACACAAAACACAAAAACAAAAACAATTATACAAGTACTCGA
ATTTTTTCAGCCACTTTTTTCTAACTCAAACTAGTGGTCGGAGTTCCATT
GTTCCGATCGAACCCTCTGAACTTTTTAATTATCGAGAAAATGGAGTGTC
AACCTTAATTATCACCTCAGCACTCGAATTTCACAAACACAAATTCGATT
GTCAAACTGTTAAAGTATAAGGGTTAAGAGTAAGACTCACCTAATTTTGA
GTATAATGTCGGACATCTTTAAGACCAATATCGATGGAAGACCAGGGCAG
CTACTCGCAAAGGAATAATAGTGCTCTTCTATAAAATATAGAGGTATTTT
CAGCATTAGAGTCCACTTTACAACACACATGACAATTTTCTAGCCCTAGG
TTAAAGATTTTGTCTCAACATTTTTGGAAATGTCGCTTGAAATTATGCTC
CTGCAAAAAAAATCACTAGAACTGGATCAATAAGGCTTATAAGGCAAAGT
TTTTAGTTCCAGTTTCGAGATTTCAAACAGTATACAGTAGCTTATATTCA
AAATCTACGTGAAATTTGGGACAGGAAAACCTCTCTTTGTACTGCAAACA
CAAATCTCTCTAAGAATGAAGATTAAATTTATGAAATACATACTGTCTCA
CATAAATACTCTCCATATGACTCATCTTTCAAACGGGCGACACACAACAC
AATGAAGAAACCAACAACAATGAAAGTTCTGGTTCTTCAGTCGGCTTGAT
CTTCTTCCAATTATTACTATTAGTTGTTATTTTAAATTTCAATTTTTCTA
TATCTAAA

Coding sequence (CDS) from alignment at sc0000127:520584..525291-

>TCONS_00011406 ID=TCONS_00011406|Name=TCONS_00011406|organism=Clytia hemisphaerica|type=CDS|length=3504bp|location=Sequence derived from alignment at sc0000127:520584..525291- (Clytia hemisphaerica)
GTTTACTGGGTCGGTCCATTGGTAGGAGCATTATGTGCGTCTTTGTCTTA
CAAATACATTTTCAAACTTGGTGAAGAAAAACCCAAAGAAAAAGCACAAC
CTATGCCAACTGTTCATATGAAAATCAAAAGCACTTCAAACTCAAGTGTC
TAAATGCCTTTCACTGGTGCTGGAGTCAATCCTATTCGTGCTTTTGGACC
TGCAGCTGTTACTGGAAATCTTGTCCACGAACACTGGGCTGTGCCGGAGC
TGGTCTTCTCTATCTCTACACACCATCCAATGTCCGTGGTCATCTGGGAA
CATTATCCATTCACGATGATCTGTTAGTTGGAGTTGCATTCGTGGTCGAA
CTCACTTTAACTTTCATTGTCATGTTAGTTATCATTGCAGCAAGGGATCC
GGACAACCAATTCTCTTTGTTACAATCTAACATGGTCGTTGGTCTATCTG
TAGCTGTCGCAATGTTGATGGGAATGTCTGGAGAAGAAGGCGAGTCTAAA
GTATCGACTTACGAGACTTATGTCTCCACACCAAGCGAGAGAACCGTTTT
GCTTGTGAAAGCACGCGGCGAAACATGGCGAGACAAAATCGGGCTTTACG
AGCCAACAGAACCAAATTTCTGGCGATACGTTTTTGCTGAATTCGTTTAC
ACGTTAATATTTACAATTATTGCGTGTGGATGTAGTCTTAACTTGGGAGA
ACCAAGGTCTGATTTACACCAAGCCGTTTGCGTTGGAGGGATTGTGGCTG
TTTTGATTACAGTTTCAGCTGAGAAATTGGGATATTTTAACCCAGCCTTG
TCATTTGGGTTGTTGGTTGCCGGTGAAATTAAATTCGTTCGATTTTTTGT
TTACGCTGCTGTTCAAGTCGCTGGCAGTTTACTGGGTCGGTCCATTGGTA
GGAGCATTATGTGCGTCTTTGTCTTACAAATACATTTTCAAACTTGGTGA
AGAAAAACCCAAAGAAAAAGCACAACCTATGCCAACTGTTCATATGAAAA
TCAAAAGCACTTCAAACTCAAGTGTCTAAATGCCTTTCACTGGTGCTGGA
GTCAATCCTATTCGTGCTTTTGGACCTGCAGCTGTTACTGGAAATCTTGT
CCACGAACACTGGGCTGTGCCGGAGCTGGTCTTCTCTATCTCTACACACC
ATCCAATGTCCGTGGTCATCTGGGAACATTATCCATTCACGATGATCTGT
TAGTTGGAGTTGCATTCGTGGTCGAACTCACTTTAACTTTCATTGTCATG
TTAGTTATCATTGCAGCAAGGGATCCGGACAACCAATTCTCTTTGTTACA
ATCTAACATGGTCGTTGGTCTATCTGTAGCTGTCGCAATGTTGATGGGAA
TGTCTGGAGAAGAAGGCGAGTCTAAAGTATCGACTTACGAGACTTATGTC
TCCACACCAAGCGAGAGAACCGTTTTGCTTGTGAAAGCACGCGGCGAAAC
ATGGCGAGACAAAATCGGGCTTTACGAGCCAACAGAACCAAATTTCTGGC
GATACGTTTTTGCTGAATTCGTTTACACGTTAATATTTACAATTATTGCG
TGTGGATGTAGTCTTAACTTGGGAGAACCAAGGTCTGATTTACACCAAGC
CGTTTGCGTTGGAGGGATTGTGGCTGTTTTGATTACAGTTTCAGCTGAGA
AATTGGGATATTTTAACCCAGCCTTGTCATTTGGGTTGTTGGTTGCCGGT
GAAATTAAATTCGTTCGATTTTTTGTTTACGCTGCTGTTCAAGTCGCTGG
CAGTTTACTGGGTCGGTCCATTGGTAGGAGCATTATGTGCGTCTTTGTCT
TACAAATACATTTTCAAACTTGGTGAAGAAAAACCCAAAGAAAAAGCACA
ACCTATGCCAACTGTTCATATGAAAATCAAAAGCACTTCAAACTCAAGTG
TCTAAATGCCTTTCACTGGTGCTGGAGTCAATCCTATTCGTGCTTTTGGA
CCTGCAGCTGTTACTGGAAATCTTGTCCACGAACACTGGGCTGTGCCGGA
GCTGGTCTTCTCTATCTCTACACACCATCCAATGTCCGTGGTCATCTGGG
AACATTATCCATTCACGATGATCTGTTAGTTGGAGTTGCATTCGTGGTCG
AACTCACTTTAACTTTCATTGTCATGTTAGTTATCATTGCAGCAAGGGAT
CCGGACAACCAATTCTCTTTGTTACAATCTAACATGGTCGTTGGTCTATC
TGTAGCTGTCGCAATGTTGATGGGAATGTCTGGAGAAGAAGGCGAGTCTA
AAGTATCGACTTACGAGACTTATGTCTCCACACCAAGCGAGAGAACCGTT
TTGCTTGTGAAAGCACGCGGCGAAACATGGCGAGACAAAATCGGGCTTTA
CGAGCCAACAGAACCAAATTTCTGGCGATACGTTTTTGCTGAATTCGTTT
ACACGTTAATATTTACAATTATTGCGTGTGGATGTAGTCTTAACTTGGGA
GAACCAAGGTCTGATTTACACCAAGCCGTTTGCGTTGGAGGGATTGTGGC
TGTTTTGATTACAGTTTCAGCTGAGAAATTGGGATATTTTAACCCAGCCT
TGTCATTTGGGTTGTTGGTTGCCGGTGAAATTAAATTCGTTCGATTTTTT
GTTTACGCTGCTGTTCAAGTCGCTGGCAGTTTACTGGGTCGGTCCATTGG
TAGGAGCATTATGTGCGTCTTTGTCTTACAAATACATTTTCAAACTTGGT
GAAGAAAAACCCAAAGAAAAAGCACAACCTATGCCAACTGTTCATATGAA
AATCAAAAGCACTTCAAACTCAAGTGTCTAAATGCCTTTCACTGGTGCTG
GAGTCAATCCTATTCGTGCTTTTGGACCTGCAGCTGTTACTGGAAATCTT
GTCCACGAACACTGGGCTGTGCCGGAGCTGGTCTTCTCTATCTCTACACA
CCATCCAATGTCCGTGGTCATCTGGGAACATTATCCATTCACGATGATCT
GTTAGTTGGAGTTGCATTCGTGGTCGAACTCACTTTAACTTTCATTGTCA
TGTTAGTTATCATTGCAGCAAGGGATCCGGACAACCAATTCTCTTTGTTA
CAATCTAACATGGTCGTTGGTCTATCTGTAGCTGTCGCAATGTTGATGGG
AATGTCTGGAGAAGAAGGCGAGTCTAAAGTATCGACTTACGAGACTTATG
TCTCCACACCAAGCGAGAGAACCGTTTTGCTTGTGAAAGCACGCGGCGAA
ACATGGCGAGACAAAATCGGGCTTTACGAGCCAACAGAACCAAATTTCTG
GCGATACGTTTTTGCTGAATTCGTTTACACGTTAATATTTACAATTATTG
CGTGTGGATGTAGTCTTAACTTGGGAGAACCAAGGTCTGATTTACACCAA
GCCGTTTGCGTTGGAGGGATTGTGGCTGTTTTGATTACAGTTTCAGCTGA
GAAATTGGGATATTTTAACCCAGCCTTGTCATTTGGGTTGTTGGTTGCCG
GTGAAATTAAATTCGTTCGATTTTTTGTTTACGCTGCTGTTCAAGTCGCT
GGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006392XLOC_006392Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011406-exon-sc0000127-1575043694:524718..525291TCONS_00011406-exon-sc0000127-1575043694:524718..525291Clytia hemisphaericaexon
TCONS_00011406-exon-sc0000127-1575043694:523256..523491TCONS_00011406-exon-sc0000127-1575043694:523256..523491Clytia hemisphaericaexon
TCONS_00011406-exon-sc0000127-1575043694:522590..522673TCONS_00011406-exon-sc0000127-1575043694:522590..522673Clytia hemisphaericaexon
TCONS_00011406-exon-sc0000127-1575043694:520584..522302TCONS_00011406-exon-sc0000127-1575043694:520584..522302Clytia hemisphaericaexon
TCONS_00011406-exon-sc0000127-1510915933:524718..525291TCONS_00011406-exon-sc0000127-1510915933:524718..525291Clytia hemisphaericaexon
TCONS_00011406-exon-sc0000127-1510915933:523256..523491TCONS_00011406-exon-sc0000127-1510915933:523256..523491Clytia hemisphaericaexon
TCONS_00011406-exon-sc0000127-1510915933:522590..522673TCONS_00011406-exon-sc0000127-1510915933:522590..522673Clytia hemisphaericaexon
TCONS_00011406-exon-sc0000127-1510915933:520584..522302TCONS_00011406-exon-sc0000127-1510915933:520584..522302Clytia hemisphaericaexon
TCONS_00011406-exon-sc0000127-1491911889:524718..525291TCONS_00011406-exon-sc0000127-1491911889:524718..525291Clytia hemisphaericaexon
TCONS_00011406-exon-sc0000127-1491911889:523256..523491TCONS_00011406-exon-sc0000127-1491911889:523256..523491Clytia hemisphaericaexon
TCONS_00011406-exon-sc0000127-1491911889:522590..522673TCONS_00011406-exon-sc0000127-1491911889:522590..522673Clytia hemisphaericaexon
TCONS_00011406-exon-sc0000127-1491911889:520584..522302TCONS_00011406-exon-sc0000127-1491911889:520584..522302Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011406-proteinTCONS_00011406-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000127supercontigsc0000127:520584..525291 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0740676	0.133221	0.187903	0.428949	0.108233	0.0597415	0.133525	0.0889254	0.136187	0.276337	0.16461	0.15594	187.722	216.418	0.149429	0.276051	0.278164	0.182814	178.718	139.575	0.0434035	0.126305	0.0517411	0.0617895	0.0809638	0.0998775	0.0470395	0.17219	0.105489	0.0426422
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000425MIP
IPR023271Aquaporin-like
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006810 transport
cellular_component GO:0016020 membrane
molecular_function GO:0005215 transporter activity
Blast
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BLAST of TCONS_00011406 vs. Swiss-Prot (Human)
Match: MIP (Lens fiber major intrinsic protein OS=Homo sapiens GN=MIP PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 5.912e-40
Identity = 88/223 (39.46%), Postives = 123/223 (55.16%), Query Frame = 1 
Query:  292 LYEPTEPNFWRYVFAEFVYTLIFTIIACGCSLNLGE-PRSDLHQAVCVGGIVAVLITVSAEKLG-YFNPALSFGLLVAGEIKFVRFFVYAAVQVAGSCAGAGLLYLYTPSNVRGHLGTLSIHDDLLVGVAFVVELTLTFIVMLVIIAARDPDNQFSLLQSNMVVGLSVAVAMLMGMPFTGAGVNPIRAFGPAAVTGNLVHEHWVYWVGPLVGALCASLSYKYI 954
            ++E    +FWR +FAEF  TL +     G SL     P   L  A+  G  +A L+       G + NPA++F  LV  ++  +R F Y A Q+ G+ AGA +LY  TP  VRG+L   ++H  + VG A  VE+ LT   +L I A  D      L    + VG S+A+  L GM +TGAG+NP R+F PA +TGN  + HWVYWVGP++G    SL Y ++
Sbjct:    1 MWELRSASFWRAIFAEFFATLFYVFFGLGSSLRWAPGPLHVLQVAMAFGLALATLVQSVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYMAAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPAVSVGQATTVEIFLTLQFVLCIFATYDERRNGQLGSVALAVGFSLALGHLFGMYYTGAGMNPARSFAPAILTGNFTN-HWVYWVGPIIGGGLGSLLYDFL 222
The following BLAST results are available for this feature:
BLAST of TCONS_00011406 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MIP5.912e-4039.46Lens fiber major intrinsic protein OS=Homo sapiens... [more]
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