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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011403 ID=TCONS_00011403|Name=TCONS_00011403|organism=Clytia hemisphaerica|type=transcript|length=2336bpRun BLAST on NCBI protein sequence of TCONS_00011403-protein >TCONS_00011403-protein ID=TCONS_00011403-protein|Name=TCONS_00011403-protein|organism=Clytia hemisphaerica|type=polypeptide|length=277bp MSNIEENESLNGAEEMVATKKSQTTLWIYLYRCSKLGPRSLWIKQSNCVLRun BLAST on NCBI transcript from alignment at sc0000127:456234..492570- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011403 ID=TCONS_00011403|Name=TCONS_00011403|organism=Clytia hemisphaerica|type=transcript|length=36337bp|location=Sequence derived from alignment at sc0000127:456234..492570- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000127:456234..492570- >TCONS_00011403 ID=TCONS_00011403|Name=TCONS_00011403|organism=Clytia hemisphaerica|type=CDS|length=3336bp|location=Sequence derived from alignment at sc0000127:456234..492570- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00011403 vs. Swiss-Prot (Human)
Match: RS10 (40S ribosomal protein S10 OS=Homo sapiens GN=RPS10 PE=1 SV=1) HSP 1 Score: 139.428 bits (350), Expect = 2.079e-37 Identity = 65/94 (69.15%), Postives = 78/94 (82.98%), Query Frame = 1
Query: 82 MIITKKNRVAIYEALFRDGVMVCIKDGNKPSHNELT--SIRNVQVMMAMKSLKSRGYVRENFAWRHGYYYLTNEGIQYLRDFLHLPPEIVPATL 357
M++ KKNR+AIYE LF++GVMV KD + P H EL ++ N+ VM AM+SLKSRGYV+E FAWRH Y+YLTNEGIQYLRD+LHLPPEIVPATL
Sbjct: 1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATL 94 The following BLAST results are available for this feature:
BLAST of TCONS_00011403 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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