TCONS_00011400 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011400
Unique NameTCONS_00011400
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1718

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011400 ID=TCONS_00011400|Name=TCONS_00011400|organism=Clytia hemisphaerica|type=transcript|length=1718bp
cacttcaaaaaatatttattgaatcGACTATATTCATTATTTGCATTTCT
GAATAAGGAAATCCGAACGATCTTAAAGATTGAAACTTGAAATCCGAAAT
TAAATTTTACCGAGTTGacggaagaagaaaagaatgGACGAAGAAATATT
CCTTCGACAGAAACGCAAAAAATATCGTTTACGAAATTTCAATCTTCGAA
GAGCAGAAGAAATGGTTGCCACAAAGAAATCACAAACTACACTCTGGATT
TATTTGTATCGTTGTTCGAAACTCGGGCCTCGTTCTTTATGGATCAAACA
ATCGAATTGTGTCTTAGAAGAACTAACCAGAACGATATGCGATAAAGCGA
TTCGTCATCGAATGACAAAAGCCTCTATCGATCATTCTCCGATCAAAAGT
CCGAAACTTTACGAAACGCCGTCCGAGAAAACAATGCAATGCGTAAAAGA
TATGATTGATTTGATAGTCTCTTCACATCCGGAACTCTATACGGAAATCA
CATTCAAGTTAAACATACCGGTTCAAGACGAACGGACTGTATGCAGGACG
TATAGtgaGTTTGCTGAGAATCTGTTCAAGCGAGGAGTTTCATGGCCGCT
CATCATTTCATTGTTGTCGTTTTCTGGAAGTCTAGCAGCGGAGTGTACGC
GGAACGGGCGGAGTATTTTAGTACGGCGTATTTGTGATTGGGCAACGTTA
TTTATCGTGATGAGACTGAAAGATTGGATACAAGATAATGGCGGATGGga
tgGAATGTACGAATTCTTTTACCAGCCTACACTCAACAATAATAGTGTGT
TTCCTTCAGATAAACTCCAACAATTAAATGAGTGGAAAATCGCCATTTCC
AATGCAGTGAAACCTGAAAAGGCTGCTCGTTTTGCACTGGGATTTTTCAT
ATTCTTAGCTTTGTTACTAATAACATTCTTTAAAAGCACATCAACAGAGT
GCAAATCTGGAGGCGTTAGAAGCAAGTTTAGTATTTATAGAGACTGTTAA
GTAGTGATTTTGAGCCATCTGAGTTATTAGAGTTATCGAATTAGGAATAT
TCCTTTTCTTGAATGAGAATCACAGAAGGAGATCAAACTTGTTGCAAAAT
GGCGATCAATTTCCATGTTGTTATTGGCTTTTTGCTTGTTAGATAATTTA
TAATTATTTCTGGTAAATTGTTGACAAACATTCTTCCAGGTAAAGAATGC
ACTTTTCTTAAACAAGATGCACACCGGGAAAAAGATTTACCGTGGCACTT
TGGATGAATTTCAAGGTGAAAAGCTgcattcttttcttttgataatTCTC
AATCCCGGGGGGGGGAGCACTCGATTTCGAAACGACGGTATGTGTCGCGC
AAAATCTGCTTTTCAAAATCGCACCCTAACAGTGCAGTTCAATATGGCTG
AAAAGGTACCCTTGCAGTGCATTTTCTCTTGATTTCCCAACCCTTATAGT
GCACTATATTTCTCAGCTGTAAATCTGCGTGAACGAAGAAGCTTGGGAAA
TTTTCTGTTTCAAAGAAAAATTGAGAAAATTATTCTTGTCAGCTGTAATT
ATCAGACAATAGAAAATTTTTCAAACAAATGAGAAGTAAAAACCTTTCTT
TTTAACAATTATTAATTTGTTTTAAAATTCGACCCTTGAAACACATCCTT
ACAGTGCATTTTGGGATGCTGGAAAACCCCACCCTTAAGCGCGGCACATG
ACGTAAGCCAGATCATAT
Run BLAST on NCBI

transcript from alignment at sc0000127:456234..460938-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011400 ID=TCONS_00011400|Name=TCONS_00011400|organism=Clytia hemisphaerica|type=transcript|length=4705bp|location=Sequence derived from alignment at sc0000127:456234..460938- (Clytia hemisphaerica)
CACTTCAAAAAATATTTATTGAATCGACTATATTCATTATTTGCATTTCT
GAATAAGGAAATCCGAACGATCTTAAAGATTGAAACTTGAAATCCGAAAT
TAAATTTTACCGAGTTGACGGAAGAAGAAAAGAATGGACGAAGAAATATT
CCTTCGACAGAAACGCAAAAAATATCGTTTACGAAATTTCAATCTTCGAA
GTAAGAACATATGGTTTATTCGTCTTTGAATTGTTTATTTATATGAAGTC
TTGGTATGGAAGAAATTAGTACAGGCGACTCTCTCTATTTCGATTTTCAA
GGGACAGAAAATCTTTTCCGAATTATAGAGATCTTCGAAATACTTTCCTG
CTGAAAGGGAGCGACGTTTTTTGCTCGAATTTTAAAAAGATTCGAATTAA
AGAGACTCGCGGAATAGAAGAGAGTTGACCGAACTTGAAGCCATTTGGAG
TTCTGAACTTTTAAACTCAACGGTATGATAAATGTTCAATGTTCAATGTT
CAAATTTTAGCAGAACTCGAAAAATTCTACAAAACACGCTTTTTATATAA
GAATACCTACACTTTATAAGAATGTCCAATATGAAAATGGCCAAAAAACT
AAGAATAATGCTAAGAATATCACCATCATGGAAGTTTGCTACTCTAGCTA
AGAATGCCATTTTTAGAGCATTTTCGATTATAAATTGTCAATTACCCCCA
AGACGCCAAGTAAGGCTCATTTCTTTCCCAAAATTGCCATTTTATGGTTG
AGAAGTATGTACTAAATGTTAAATCTAGTCTGAATTGGGATCCTATAACC
TAAGAATGCTGTAAGAATATTTTAGGATGATTTCCCAAAAAAGNTAAGAA
TATTTTAGGATGATTTTCCCAAAAAAGTTAAGAATATCCATGATGAAATG
GATTTACACCATTCTTATAAAAAAAAGCGTGTAACAAAACCATAGTATTT
TTTAGCTGGGATGTTTGCTAACAGCGTTTGTCTTCCGCCTAAATCTTCTC
TTAATTTGATAAAACTTTGGCTTATAATCTTAATTGTTTTTGTTGAAAAT
GGTTAAAGGGAAATGGATTTCATGATGGAAACCATTTAACAAAGGTACCA
GCACATTAGAGATCGTGAAAGTACTTCCATGTTCCATAAGGAACTCTATT
TAATATGTACTCAGTCGTGCTGTTCTAAATCAAGCAAGCCAAACGATATC
TCGTGGTTGCTCTTGAAGGGACAGATGAAATAGAAAAGACATTTTTACTA
ATAGGTACGAATTATTTTTATGCGAAAAGATTGGTTACATGTTTAAAATG
GTCACTAGGATCGAATCTTTGTAGAAGCTTGCACTATTTCAACGGGTAAA
CTTTTATATTTTTGAAAGATCTACCGTACGTCGAATACTTAGAATAAGTA
TTGGAGTTACAACGTCATGAAAATTAAGGAACTTGTAAAACATATTTTGA
ATTAGATTTTCTATTCCTCAACTTTTTGTTTGAAAAAGAGGTTTAGGGAA
TAACCCTGCTTACAGCTCTTTAATCTTGAATGCTTAACAAAGAGAATTTT
GAAATCTGATGTTGTGAAAATGTTTGTCATTGGGCGGGAATCGCTCCCAC
AATCAATCAGTAAGGGAACCAATTGACTTTATCTCCATGACGTCCATATA
ACGTTTGAGTAAATGATTTTGATATTTGGTACCCCACGAAATCAGGAAAG
TTAAATTACTCTAATCAACAATTATACAATTGACCCGGAAGAACTGTATA
CTGGATCACTAATTATATCGATAATTGCGTGAAGCATGTGCCAGTCGTAG
ATCTTTTTCTCTAGTGTTTGACTTTGGTTTGTTTTAGTTTTGATTGTTTT
TCTTTTACTTTTCTCATGTGCTTTGACGTAGTTAAAATGTACAATTAAAC
AATGGGAACTTAGGGAGTCTTCTTTTCAAGATTCTTTATTTATTAGGTGA
TAAAAATTTGGGCATGGTTGAACCTTTGGGCGTGGCCCTAGCATGTGCTG
TATATGTAGCGAAACGAATATTATAATAAAATAGCTTGTATTTCAGTGAT
TTCCATTATTTCATTGTCGACTACGAAAACATTTAGGAAAATATCAAAAC
ATCTTTTCATGGAGAAAAGCCTTGCTCTAAATCTAATATAAACTTAGGAA
AAACTGTTTTTGGCTCCTGTCTGAACCTTTTTGCAATGCTTTACACGTCT
CGTAGTTAATTTCAGTAACAACTTTCAAGATGTGAAAAGAAAAAACTTTG
ACAATTTATGTTTTTGTTCGTTCTCAGGAGCAGAAGAAATGGTTGCCACA
AAGAAATCACAAACTACACTCTGGATTTATTTGTATCGTTGTTCGAAACT
CGGGCCTCGTTCTTTATGGATCAAACAATCGAATTGTGTCTTAGAAGAAC
TAACCAGAACGATATGCGATAAAGCGATTCGTCATCGAATGACAAAAGCC
TCTATCGATCATTCTCCGATCAAAAGTCCGAAACTTTACGAAACGCCGTC
CGAGAAAACAATGCAATGCGTAAAAGATATGATTGATTTGATAGTCTCTT
CACATCCGGAACTCTATACGGAAATCACATTCAAGTTAAACATACCGGTT
CAAGACGAACGGACTGTATGCAGGACGTATAGGTGAGCATCATTATAAAG
ACCACACCCATACATTTATTGCCCCCCCCCCTGTTGTTTTGAAACTATAT
TGAACAATTCTAGTGGTTTGTTTTGAGTCATTTCTAACTAATATTTCGTT
TCGTATAAGGGATCTGTAGCATGTAAGCTTGGTCAAAGTATTGTCTAACC
AAAGGTATATAGGTGAAATGTCGTTGAAAAACATTGAGCTGTTTAGGTGT
TGACTCTCTTTAAACTGGAGACGGAGCAAAAAAAAAACATTTAAGGGCGG
AGTTTGAATCGGGTGGAGATTACAGGAAATAAAGACACATCCGAGAATAT
TCATATATTCTTATAGGTTGCACTTTATAGCCGAAGTTGCATTTTTAGCA
TATCCATTCCCATTCATTTTATTTTAGTGAGTTTGCTGAGAATCTGTTCA
AGCGAGGAGTTTCATGGCCGCTCATCATTTCATTGTTGTCGTTTTCTGGA
AGTCTAGCAGCGGAGTGTACGCGGAACGGGCGGAGTATTTTAGTACGGCG
TATTTGTGATTGGGCAACGTTATTTATCGTGATGAGACTGAAAGATTGGA
TACAAGATAATGGCGGATGGGTGAGTTTAATGATATTCGTATTTCATATT
TTTCGCCCTTTTTTTCCTATAACGGGCACAAATCGCAAAACAATTTCAAG
TTGCAAGACTTTCTGTCTCCACTTTCACGCGAAATGGGCGACAGTTTTTT
TCTTAACCTTTTTTGCCTGAAGAAAAATTTATGACATAAAAAAGTTTCGC
GCGAACAAAAAAAAGTTGCCTTCAACTTTTTTCAACCGTTACGTCAATGT
TGACCAGTGGAATTGCTTCATTTTTCAACGGACCAATGACCTTACAAAAA
CTTTAAAAAGTTTTTGCTCATTTCGCGCGAAAGTGGAGACCGGCCTTATT
ACCAAATCAACTAATCAGTGACATAGAAAGTAATTTGATTATTGAGCAAA
TTTTGGAGCGTTACGTTAACAGGTAACTTCGATAGTTCATGACCAATTTA
AATCAGCGGGAGTTTTTTATGGACTGGTCTACAGTTAAATTCTTTATGGC
AATTTTCTAAGCTTTTGTTTAATTCCCTTTTTTAGGATGGAATGTACGAA
TTCTTTTACCAGCCTACACTCAACAATAATAGTGTGTTTCCTTCAGATAA
ACTCCAACAATTAAATGAGTGGAAAATCGCCATTTCCAATGCAGTGAAAC
CTGAAAAGGCTGCTCGTTTTGCACTGGGATTTTTCATATTCTTAGCTTTG
TTACTAATAACATTCTTTAAAAGCACATCAACAGAGTGCAAATCTGGAGG
CGTTAGAAGCAAGTTTAGTATTTATAGAGACTGTTAAGTAGTGATTTTGA
GCCATCTGAGTTATTAGAGTTATCGAATTAGGAATATTCCTTTTCTTGAA
TGAGAATCACAGAAGGAGATCAAACTTGTTGCAAAATGGCGATCAATTTC
CATGTTGTTATTGGCTTTTTGCTTGTTAGATAATTTATAATTATTTCTGG
TAAATTGTTGACAAACATTCTTCCAGGTAAAGAATGCACTTTTCTTAAAC
AAGATGCACACCGGGAAAAAGATTTACCGTGGCACTTTGGATGAATTTCA
AGGTGAAAAGCTGCATTCTTTTCTTTTGATAATTCTCAATCCCGGGGGGG
GGAGCACTCGATTTCGAAACGACGGTATGTGTCGCGCAAAATCTGCTTTT
CAAAATCGCACCCTAACAGTGCAGTTCAATATGGCTGAAAAGGTACCCTT
GCAGTGCATTTTCTCTTGATTTCCCAACCCTTATAGTGCACTATATTTCT
CAGCTGTAAATCTGCGTGAACGAAGAAGCTTGGGAAATTTTCTGTTTCAA
AGAAAAATTGAGAAAATTATTCTTGTCAGCTGTAATTATCAGACAATAGA
AAATTTTTCAAACAAATGAGAAGTAAAAACCTTTCTTTTTAACAATTATT
AATTTGTTTTAAAATTCGACCCTTGAAACACATCCTTACAGTGCATTTTG
GGATGCTGGAAAACCCCACCCTTAAGCGCGGCACATGACGTAAGCCAGAT
CATAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006391XLOC_006391Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011400-exon-sc0000127-1575043694:460739..460938TCONS_00011400-exon-sc0000127-1575043694:460739..460938Clytia hemisphaericaexon
TCONS_00011400-exon-sc0000127-1575043694:458307..458661TCONS_00011400-exon-sc0000127-1575043694:458307..458661Clytia hemisphaericaexon
TCONS_00011400-exon-sc0000127-1575043694:457719..457911TCONS_00011400-exon-sc0000127-1575043694:457719..457911Clytia hemisphaericaexon
TCONS_00011400-exon-sc0000127-1575043694:456234..457203TCONS_00011400-exon-sc0000127-1575043694:456234..457203Clytia hemisphaericaexon
TCONS_00011400-exon-sc0000127-1510915933:460739..460938TCONS_00011400-exon-sc0000127-1510915933:460739..460938Clytia hemisphaericaexon
TCONS_00011400-exon-sc0000127-1510915933:458307..458661TCONS_00011400-exon-sc0000127-1510915933:458307..458661Clytia hemisphaericaexon
TCONS_00011400-exon-sc0000127-1510915933:457719..457911TCONS_00011400-exon-sc0000127-1510915933:457719..457911Clytia hemisphaericaexon
TCONS_00011400-exon-sc0000127-1510915933:456234..457203TCONS_00011400-exon-sc0000127-1510915933:456234..457203Clytia hemisphaericaexon
TCONS_00011400-exon-sc0000127-1491911889:460739..460938TCONS_00011400-exon-sc0000127-1491911889:460739..460938Clytia hemisphaericaexon
TCONS_00011400-exon-sc0000127-1491911889:458307..458661TCONS_00011400-exon-sc0000127-1491911889:458307..458661Clytia hemisphaericaexon
TCONS_00011400-exon-sc0000127-1491911889:457719..457911TCONS_00011400-exon-sc0000127-1491911889:457719..457911Clytia hemisphaericaexon
TCONS_00011400-exon-sc0000127-1491911889:456234..457203TCONS_00011400-exon-sc0000127-1491911889:456234..457203Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000127supercontigsc0000127:456234..460938 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0246909	0	0	0	0	0	0.0618577	0	0.0999735	0.149311	0.216292	0.205779	0.126178	0.196419	0.147927	0.317827	0	0.127863	0.332598	0.212949	0.116393	0.0680361	0.110495	0.100909	0.0256667	0.0687046	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011400 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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