TCONS_00011399 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011399
Unique NameTCONS_00011399
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1606

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011399 ID=TCONS_00011399|Name=TCONS_00011399|organism=Clytia hemisphaerica|type=transcript|length=1606bp
GTGCTGTTCTAAATCAAGCAAGCCAAACGATATCTCGTGGTTGCTCTTGA
AGGGACAGATGAAATAGAAAAGACATTTTTACTAATAGGAGCAGAAGAAA
TGGTTGCCACAAAGAAATCACAAACTACACTCTGGATTTATTTGTATCGT
TGTTCGAAACTCGGGCCTCGTTCTTTATGGATCAAACAATCGAATTGTGT
CTTAGAAGAACTAACCAGAACGATATGCGATAAAGCGATTCGTCATCGAA
TGACAAAAGCCTCTATCGATCATTCTCCGATCAAAAGTCCGAAACTTTAC
GAAACGCCGTCCGAGAAAACAATGCAATGCGTAAAAGATATGATTGATTT
GATAGTCTCTTCACATCCGGAACTCTATACGGAAATCACATTCAAGTTAA
ACATACCGGTTCAAGACGAACGGACTGTATGCAGGACGTATAGtgaGTTT
GCTGAGAATCTGTTCAAGCGAGGAGTTTCATGGCCGCTCATCATTTCATT
GTTGTCGTTTTCTGGAAGTCTAGCAGCGGAGTGTACGCGGAACGGGCGGA
GTATTTTAGTACGGCGTATTTGTGATTGGGCAACGTTATTTATCGTGATG
AGACTGAAAGATTGGATACAAGATAATGGCGGATGGgatgGAATGTACGA
ATTCTTTTACCAGCCTACACTCAACAATAATAGTGTGTTTCCTTCAGATA
AACTCCAACAATTAAATGAGTGGAAAATCGCCATTTCCAATGCAGTGAAA
CCTGAAAAGGCTGCTCGTTTTGCACTGGGATTTTTCATATTCTTAGCTTT
GTTACTAATAACATTCTTTAAAAGCACATCAACAGAGTGCAAATCTGGAG
GCGTTAGAAGCAAGTTTAGTATTTATAGAGACTGTTAAGTAGTGATTTTG
AGCCATCTGAGTTATTAGAGTTATCGAATTAGGAATATTCCTTTTCTTGA
ATGAGAATCACAGAAGGAGATCAAACTTGTTGCAAAATGGCGATCAATTT
CCATGTTGTTATTGGCTTTTTGCTTGTTAGATAATTTATAATTATTTCTG
GTAAATTGTTGACAAACATTCTTCCAGGTAAAGAATGCACTTTTCTTAAA
CAAGATGCACACCGGGAAAAAGATTTACCGTGGCACTTTGGATGAATTTC
AAGGTGAAAAGCTgcattcttttcttttgataatTCTCAATCCCGGGGGG
GGGAGCACTCGATTTCGAAACGACGGTATGTGTCGCGCAAAATCTGCTTT
TCAAAATCGCACCCTAACAGTGCAGTTCAATATGGCTGAAAAGGTACCCT
TGCAGTGCATTTTCTCTTGATTTCCCAACCCTTATAGTGCACTATATTTC
TCAGCTGTAAATCTGCGTGAACGAAGAAGCTTGGGAAATTTTCTGTTTCA
AAGAAAAATTGAGAAAATTATTCTTGTCAGCTGTAATTATCAGACAATAG
AAAATTTTTCAAACAAATGAGAAGTAAAAACCTTTCTTTTTAACAATTAT
TAATTTGTTTTAAAATTCGACCCTTGAAACACATCCTTACAGTGCATTTT
GGGATGCTGGAAAACCCCACCCTTAAGCGCGGCACATGACGTAAGCCAGA
TCATAT
Run BLAST on NCBI

transcript from alignment at sc0000127:456234..459772-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011399 ID=TCONS_00011399|Name=TCONS_00011399|organism=Clytia hemisphaerica|type=transcript|length=3539bp|location=Sequence derived from alignment at sc0000127:456234..459772- (Clytia hemisphaerica)
GTGCTGTTCTAAATCAAGCAAGCCAAACGATATCTCGTGGTTGCTCTTGA
AGGGACAGATGAAATAGAAAAGACATTTTTACTAATAGGTACGAATTATT
TTTATGCGAAAAGATTGGTTACATGTTTAAAATGGTCACTAGGATCGAAT
CTTTGTAGAAGCTTGCACTATTTCAACGGGTAAACTTTTATATTTTTGAA
AGATCTACCGTACGTCGAATACTTAGAATAAGTATTGGAGTTACAACGTC
ATGAAAATTAAGGAACTTGTAAAACATATTTTGAATTAGATTTTCTATTC
CTCAACTTTTTGTTTGAAAAAGAGGTTTAGGGAATAACCCTGCTTACAGC
TCTTTAATCTTGAATGCTTAACAAAGAGAATTTTGAAATCTGATGTTGTG
AAAATGTTTGTCATTGGGCGGGAATCGCTCCCACAATCAATCAGTAAGGG
AACCAATTGACTTTATCTCCATGACGTCCATATAACGTTTGAGTAAATGA
TTTTGATATTTGGTACCCCACGAAATCAGGAAAGTTAAATTACTCTAATC
AACAATTATACAATTGACCCGGAAGAACTGTATACTGGATCACTAATTAT
ATCGATAATTGCGTGAAGCATGTGCCAGTCGTAGATCTTTTTCTCTAGTG
TTTGACTTTGGTTTGTTTTAGTTTTGATTGTTTTTCTTTTACTTTTCTCA
TGTGCTTTGACGTAGTTAAAATGTACAATTAAACAATGGGAACTTAGGGA
GTCTTCTTTTCAAGATTCTTTATTTATTAGGTGATAAAAATTTGGGCATG
GTTGAACCTTTGGGCGTGGCCCTAGCATGTGCTGTATATGTAGCGAAACG
AATATTATAATAAAATAGCTTGTATTTCAGTGATTTCCATTATTTCATTG
TCGACTACGAAAACATTTAGGAAAATATCAAAACATCTTTTCATGGAGAA
AAGCCTTGCTCTAAATCTAATATAAACTTAGGAAAAACTGTTTTTGGCTC
CTGTCTGAACCTTTTTGCAATGCTTTACACGTCTCGTAGTTAATTTCAGT
AACAACTTTCAAGATGTGAAAAGAAAAAACTTTGACAATTTATGTTTTTG
TTCGTTCTCAGGAGCAGAAGAAATGGTTGCCACAAAGAAATCACAAACTA
CACTCTGGATTTATTTGTATCGTTGTTCGAAACTCGGGCCTCGTTCTTTA
TGGATCAAACAATCGAATTGTGTCTTAGAAGAACTAACCAGAACGATATG
CGATAAAGCGATTCGTCATCGAATGACAAAAGCCTCTATCGATCATTCTC
CGATCAAAAGTCCGAAACTTTACGAAACGCCGTCCGAGAAAACAATGCAA
TGCGTAAAAGATATGATTGATTTGATAGTCTCTTCACATCCGGAACTCTA
TACGGAAATCACATTCAAGTTAAACATACCGGTTCAAGACGAACGGACTG
TATGCAGGACGTATAGGTGAGCATCATTATAAAGACCACACCCATACATT
TATTGCCCCCCCCCCTGTTGTTTTGAAACTATATTGAACAATTCTAGTGG
TTTGTTTTGAGTCATTTCTAACTAATATTTCGTTTCGTATAAGGGATCTG
TAGCATGTAAGCTTGGTCAAAGTATTGTCTAACCAAAGGTATATAGGTGA
AATGTCGTTGAAAAACATTGAGCTGTTTAGGTGTTGACTCTCTTTAAACT
GGAGACGGAGCAAAAAAAAAACATTTAAGGGCGGAGTTTGAATCGGGTGG
AGATTACAGGAAATAAAGACACATCCGAGAATATTCATATATTCTTATAG
GTTGCACTTTATAGCCGAAGTTGCATTTTTAGCATATCCATTCCCATTCA
TTTTATTTTAGTGAGTTTGCTGAGAATCTGTTCAAGCGAGGAGTTTCATG
GCCGCTCATCATTTCATTGTTGTCGTTTTCTGGAAGTCTAGCAGCGGAGT
GTACGCGGAACGGGCGGAGTATTTTAGTACGGCGTATTTGTGATTGGGCA
ACGTTATTTATCGTGATGAGACTGAAAGATTGGATACAAGATAATGGCGG
ATGGGTGAGTTTAATGATATTCGTATTTCATATTTTTCGCCCTTTTTTTC
CTATAACGGGCACAAATCGCAAAACAATTTCAAGTTGCAAGACTTTCTGT
CTCCACTTTCACGCGAAATGGGCGACAGTTTTTTTCTTAACCTTTTTTGC
CTGAAGAAAAATTTATGACATAAAAAAGTTTCGCGCGAACAAAAAAAAGT
TGCCTTCAACTTTTTTCAACCGTTACGTCAATGTTGACCAGTGGAATTGC
TTCATTTTTCAACGGACCAATGACCTTACAAAAACTTTAAAAAGTTTTTG
CTCATTTCGCGCGAAAGTGGAGACCGGCCTTATTACCAAATCAACTAATC
AGTGACATAGAAAGTAATTTGATTATTGAGCAAATTTTGGAGCGTTACGT
TAACAGGTAACTTCGATAGTTCATGACCAATTTAAATCAGCGGGAGTTTT
TTATGGACTGGTCTACAGTTAAATTCTTTATGGCAATTTTCTAAGCTTTT
GTTTAATTCCCTTTTTTAGGATGGAATGTACGAATTCTTTTACCAGCCTA
CACTCAACAATAATAGTGTGTTTCCTTCAGATAAACTCCAACAATTAAAT
GAGTGGAAAATCGCCATTTCCAATGCAGTGAAACCTGAAAAGGCTGCTCG
TTTTGCACTGGGATTTTTCATATTCTTAGCTTTGTTACTAATAACATTCT
TTAAAAGCACATCAACAGAGTGCAAATCTGGAGGCGTTAGAAGCAAGTTT
AGTATTTATAGAGACTGTTAAGTAGTGATTTTGAGCCATCTGAGTTATTA
GAGTTATCGAATTAGGAATATTCCTTTTCTTGAATGAGAATCACAGAAGG
AGATCAAACTTGTTGCAAAATGGCGATCAATTTCCATGTTGTTATTGGCT
TTTTGCTTGTTAGATAATTTATAATTATTTCTGGTAAATTGTTGACAAAC
ATTCTTCCAGGTAAAGAATGCACTTTTCTTAAACAAGATGCACACCGGGA
AAAAGATTTACCGTGGCACTTTGGATGAATTTCAAGGTGAAAAGCTGCAT
TCTTTTCTTTTGATAATTCTCAATCCCGGGGGGGGGAGCACTCGATTTCG
AAACGACGGTATGTGTCGCGCAAAATCTGCTTTTCAAAATCGCACCCTAA
CAGTGCAGTTCAATATGGCTGAAAAGGTACCCTTGCAGTGCATTTTCTCT
TGATTTCCCAACCCTTATAGTGCACTATATTTCTCAGCTGTAAATCTGCG
TGAACGAAGAAGCTTGGGAAATTTTCTGTTTCAAAGAAAAATTGAGAAAA
TTATTCTTGTCAGCTGTAATTATCAGACAATAGAAAATTTTTCAAACAAA
TGAGAAGTAAAAACCTTTCTTTTTAACAATTATTAATTTGTTTTAAAATT
CGACCCTTGAAACACATCCTTACAGTGCATTTTGGGATGCTGGAAAACCC
CACCCTTAAGCGCGGCACATGACGTAAGCCAGATCATAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006391XLOC_006391Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011399-exon-sc0000127-1575043694:459685..459772TCONS_00011399-exon-sc0000127-1575043694:459685..459772Clytia hemisphaericaexon
TCONS_00011399-exon-sc0000127-1575043694:458307..458661TCONS_00011399-exon-sc0000127-1575043694:458307..458661Clytia hemisphaericaexon
TCONS_00011399-exon-sc0000127-1575043694:457719..457911TCONS_00011399-exon-sc0000127-1575043694:457719..457911Clytia hemisphaericaexon
TCONS_00011399-exon-sc0000127-1575043694:456234..457203TCONS_00011399-exon-sc0000127-1575043694:456234..457203Clytia hemisphaericaexon
TCONS_00011399-exon-sc0000127-1510915933:459685..459772TCONS_00011399-exon-sc0000127-1510915933:459685..459772Clytia hemisphaericaexon
TCONS_00011399-exon-sc0000127-1510915933:458307..458661TCONS_00011399-exon-sc0000127-1510915933:458307..458661Clytia hemisphaericaexon
TCONS_00011399-exon-sc0000127-1510915933:457719..457911TCONS_00011399-exon-sc0000127-1510915933:457719..457911Clytia hemisphaericaexon
TCONS_00011399-exon-sc0000127-1510915933:456234..457203TCONS_00011399-exon-sc0000127-1510915933:456234..457203Clytia hemisphaericaexon
TCONS_00011399-exon-sc0000127-1491911889:459685..459772TCONS_00011399-exon-sc0000127-1491911889:459685..459772Clytia hemisphaericaexon
TCONS_00011399-exon-sc0000127-1491911889:458307..458661TCONS_00011399-exon-sc0000127-1491911889:458307..458661Clytia hemisphaericaexon
TCONS_00011399-exon-sc0000127-1491911889:457719..457911TCONS_00011399-exon-sc0000127-1491911889:457719..457911Clytia hemisphaericaexon
TCONS_00011399-exon-sc0000127-1491911889:456234..457203TCONS_00011399-exon-sc0000127-1491911889:456234..457203Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000127supercontigsc0000127:456234..459772 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0.0530633	0	0	0.0386526	0	0.0830395	0.0575722	0.0251759	0	0	0.0272951	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011399 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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