TCONS_00011394 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00011394
Unique Name	TCONS_00011394
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	715

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000127:409817..413914-

transcript sequence

>TCONS_00011394 ID=TCONS_00011394|Name=TCONS_00011394|organism=Clytia hemisphaerica|type=transcript|length=715bp
TACTGTTatttagaaaaacaatttattcaataagaaaaaaatggggaaga
aatcaaaaaagtcaaataagCTTGAATCGTTGAAAGCAgcaattgaagaa
gaagaaaataaagaagaagagGTCAAGGAAGATGAGCCAAAACTTGTGAA
AAAGAGAAAAGGAAAGAAAGATGTGGCTGCCAAAATGAAGAATTTAGAAC
TGGGTGAGGATAGAGGTGCTGAACAATGTTTCGATTACGACAGCGAAGAA
GAAACCGAAGAACCAGATTATGCTGCTGAAACTGAAGATACTGGGgTGAA
AATGTCAcgtaaagaaaagaagaaagctgCAAAACAGgCAAAATACGCCG
CTGAACAAGCTGCAATGGAAAACGAAAGTCAATTTTCTGTATCACAACAA
GAACAAACATCAAAAGCAGCTGCTATCGAAAATGCAACTGATATTAAGGT
AGAAAAATTCAGCATTGCAGCTAGAGGAAAAGACCTTTTTGTGAATGCAG
ATTTGACAATTACACAAGGTCGCCGATATGGTCTTGTTGGTCCTAATGGc
atGGGAAAGACAACACTGCTGGTACATATTGCACGACGTTTGATCAAAAT
TCCACCCAATATTGATGTGTTGTTGTGCGAACAAGATATTCAAGTAGATG
AAACACCTGCTGTTGATATGGTCTTGAAAGCTGacaaaaaacgtttagaa
ctTCTTGCAGAGGTT

Run BLAST on NCBI

transcript from alignment at sc0000127:409817..413914-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00011394 ID=TCONS_00011394|Name=TCONS_00011394|organism=Clytia hemisphaerica|type=transcript|length=4098bp|location=Sequence derived from alignment at sc0000127:409817..413914- (Clytia hemisphaerica)
TACTGTTATTTAGAAAAACAATTTATTCAATAAGAAAAAAATGGGGAAGA
AATCAAAAAAGTCAAATAAGCTTGAATCGTTGAAAGCAGCAATTGAAGAA
GAAGAAAATAAAGAAGAAGAGGTCAAGGAAGATGAGCCAAAACTTGTGAA
AAAGAGAAAAGGTTGGTTCAAACAGCACTCAATGTGTAGAAATCTGTTTC
AGCATGTTTCATGTTTTTAATCATTCCCCATTTTGAATCTATTCTTCATC
TTACTTCAATTTGTTCATGGTTCTTCTGTCTAAGTTACAAAAATGAAAAT
GTAAAAGTAAAAATTGTTGAATATATTACAAATTCACAAAAATAAAAATT
ACAAATTAACAGGACTGGCTTGAGAGTAAAGAGGAGGATAGGATTAAGGT
ATGGGAGACCTGTTGGGAGGAAGTATTTGAAGAAAAAAAAATGAAAAAAA
ATTTTAGTCTATCACTTTTTTAATATAAAAAAATATTAGGAATTTATATT
TTTATTATTTCTTACACATTAATTACCTGTATTTACTGTCTGTATTTATG
TTGCTTTTAGGAAAGAAAGATGTGGCTGCCAAAATGAAGAATTTAGAACT
GGGTGAGGATAGAGGTGCTGAACAATGTTTCGATTACGACAGCGAAGAAG
AAACCGAAGAACCAGATTATGCTGCTGAAACTGAAGATACTGGGGGTAAA
TATAATTTTTGTATTCTGAGAGGGCTGGTACCGTTTACTGTTAGTTTGCC
GTCACCCAACCTTACATTTTGGAGGTGGGTCTGTCGGTCAGTTAGAAAAA
TTTATTTTTGAAGATTTATGAAAATTCAGTTTATATTTAGGTAATTTTGA
AGTAAAAACAAAAGAGCTAGAAATTAGTTCATGATTCTTAAAGTAATATA
GAATGAGACAGACACAATAGGGGTTTTGATTTGAAGAAAAGTAATTTTCT
TTTTTTAAATGGCCATAGTCCAGCCTTATTTACAGTACTTCTAAAAAGTA
ATTAAGTCTCCAAGTAGTTATAGACAGTGCTAAACATTCCAACTTTTTTC
TTCACCAGTGAAAATGTCACGTAAAGAAAAGAAGAAAGCTGCAAAACAGG
TACTGATAGTTTTCTCTTGTGCATTTGTTGCAGAATTTTTGTGTTCTACA
GATCTTTCATTAAAGATCGATCATTCTTATCTGAACAGAAAGCAACCATA
GAGGTGTTTGATGGTTTACTATCTTCTCTGGTATAATTGAGACTCTCGAA
AATAAATGTAAATAAATGTTCAAGAAAAGATCTGATTGATCAATAGGAAA
TACAACAAAGATGTAGAAATAATATGTACAAAACACCCTAACTTTTTTGA
TAATATTTTCATTTCAAGGCAAAATACGCCGCTGAACAAGCTGCAATGGA
AAACGAAAGTCAATTTTCTGTATCACAACAAGAACAAACATCAAAAGCAG
CTGCTATCGAAAATGCAACTGATATTAAGGTAACTTCTGTTTGGTAGCAA
GAAATTTAGTACATTTTTGATTAAGATTTAATCAAATATTGAAGATTTGA
AAAAGTTTCAAAATCGAAAATTTTTTTCCAAAACACATTTTTTTCAGGTA
GAAAAATTCAGCATTGCAGCTAGAGGAAAAGACCTTTTTGTGAATGCAGA
TTTGACAATTACACAAGGTCGCCGATATGGTCTTGTTGGTCCTAATGGGT
AAGCAGAAAACTTTCCACATTCTCAAAGAAGTGAGAACTTCGAATCATCT
AATAAATCTTACTGTTTGCAATGTGTCGAGACTTAAGTAACAGTTTTCCA
TTTTTTTAAGTGCAACCTTACCAAAAATTTAGTAGACTAAATATTTTAAT
AAAAACCATATGAAAGGCTAGATTCTTTGNTAAAACTTGTCAGCATTGGC
TTAAAACTCACATTATCTTTGTTTGCTGTACAGGAGAAACATCTTTTGAA
AGCGCTCGAATCAAAAGACGAGAAGATCAGTGAAGATGCGAACAAACGAT
TGAAAGTTGTTTATGCTGAAATGGAAGCTATCGGTGCTGACAAAGCCGAA
TCCAAAGCTAGGCGTATCTTATCTGTAAGAATCGTTTCAACCCTAACACT
GTAAGAGGATTGGATTTCAAGTTTTCCCAGAGTCAAATGATGTCATAATG
CATGTCTGTGTGCTGTGTTGTGAATAAGTGTCGGTGTAGTGAACAGACCT
TTTCATAAATTACGTCACGAACATCAATTGCCTCGTTTTGAAATTATTGC
CATGGTGAATAACTACCAGCGAATTTTATTAAAATTACTTCCTATTCATA
AACAAATCATTTAATGTCTCAAGGGACATAATCACCATGATAATTGTTTG
AATACGAGGCAAGTGATGTTCGTGACGTAATTTATAAAAAGGTCTATTAA
GCCATTTGACCCAATTCCCTTTCATTATCGCTTTTGACAGAAAGATTTGA
TATAAGTGTACCAGCTGTTAGGCTTAAGTGGTTTACTCTGCCTTTCTTTC
CTACTCCCCCTTTGGTGTCCATAATTTAGAGATCGTCTAGCTGAAGATAA
AACAGAATGCTGAGGAAGCGTTCATTTTATCAAAGTTGAATTATCTATAA
AAGTCTCGGAAGGATTTCCTTCTCAGTGAAGATGTTTGTCCGTCTCAAAA
TTCAGCATGATTCACAAAAATTTCAAGAATTTGTGCTAATTTGCAGTATA
AAATCTATTTCCGCTTCAGAGGAAAAACCTTGCTCTGACAATGCTTTATA
AAAATTGGTTCAATTCAAATCTTTAAGCTGCAATTATAATATTTCAGTTC
GAAATTATGCTAAACTAGGTCATAANATTGAGACTCTCGAAAATAAATGT
AAATAAATGTTCAAGAAAAGATCTGATTGATCAATAGGAAATACAACAAA
GATGTAGAAATAATATGTACAAAACACCCTAACTTTTTTGATAATATTTT
CATTTCAAGGCAAAATACGCCGCTGAACAAGCTGCAATGGAAAACGAAAG
TCAATTTTCTGTGTCACAACAAGAACAAACATCAAAAGCAGCTGCTATCG
AAAATGCAACTGATATTAAGGTAACTTCTGTTTGGTAGCAAGAAATTTAG
TACATTTTTTATTAAGATTTAATCAAATTATTGAAGATTTGAAAAACTTT
CAAAATCGAAAATTCTTTTCTACACATTTTTTTCAGGTAGAAAAATTCAG
CATTGCAGCTAGAGGAAAAGACCTTTTTGTGAATGCAGATTTGACAATTG
CACAAGGTCGCCGATATGGTCTTGTTGGTCCTAATGGGTAAGCAGAAAAC
TTTCCACATTCTCAAAGAAGTGAGAACTTCGAATCATCTAATAAATCTTA
CTGTTTGCCTAGTTAGCAATGCGTCGCATGAAGACTTAAGTAACATTTTT
CCATTTCTTTTAGTGCAACCTTACCAAAAATTTATTAGACTAAATATTTT
GATAAAAACCATATGAAAGGCTAGATTCTTTCCCCACAGGAAAATATGTA
AATACAATTTTCAACCTAAAAGATTTAAACCTTTTCCATTGGTTAACAAA
CACTGTGGTTTCAACTCACATAAAGGCTTTGTTTGTTTAACACATCCTTA
TCTTCAGAGAGTTATACCACCTAGTGTTTTCACAGAATTCTGGCGTCATG
CAGTTGCAAGAATGATGCTTTTCATTAACACTGATCATAATTCCATTTCA
TTGTTTTTTTTCTTTCAGCATGGGAAAGACAACACTGCTGGTACATATTG
CACGACGTTTGATCAAAATTCCACCCAATATTGATGTGTTGTTGTGCGAA
CAAGGTCAGATTATTGCCCATGAGCTATTCACAATATGAACCACTGCAAT
GACTCTAGAAATATTTATGGAGTTATACTTTGATATAAATTTTGATATTG
ATGATGATTTCTTTATGAATAAGTCGAGTCTTGCGCTCAAAGTTTCTCAA
AGGTATTACCACTTTTTCATTTCCTTTACATAATGATTCGAACAAAGATG
ACCTTTTTCATTCAATAGATATTCAAGTAGATGAAACACCTGCTGTTGAT
ATGGTCTTGAAAGCTGACAAAAAACGTTTAGAACTTCTTGCAGAGGTT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_006390	XLOC_006390	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000127	supercontig	sc0000127:409817..413914 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
24.9137	19.5093	5.30021	4.09944	13.3072	5.08032	6.88837	0.0243909	26.0469	20.758	28.1513	28.1019	27.7397	28.4428	24.9508	26.791	19.1008	20.0541	14.2412	14.1026	15.7042	19.441	23.1396	20.9295	7.83851	0.00786105	11.9673	8.07241	10.1271	12.0301

Blast

[Close]

BLAST of TCONS_00011394 vs. Swiss-Prot (Human)
Match: ABCF1 (ATP-binding cassette sub-family F member 1 OS=Homo sapiens GN=ABCF1 PE=1 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 8.706e-47
Identity = 80/113 (70.80%), Postives = 93/113 (82.30%), Query Frame = 2

Query:  374 ESQFSVSQQEQTSKAAAIENATDIKVEKFSIAARGKDLFVNADLTITQGRRYGLVGPNGMGKTTLLVHIARRLIKIPPNIDVLLCEQDIQVDETPAVDMVLKADKKRLELLAE 712
            E+ FSVSQ E +S+ A +ENA+DIK+EKFSI+A GK+LFVNADL I  GRRYGLVGPNG GKTTLL HIA R + IPPNIDVLLCEQ++  DETPAV  VL+AD KRL+LL E
Sbjct:  281 ENDFSVSQAEMSSRQAMLENASDIKLEKFSISAHGKELFVNADLYIVAGRRYGLVGPNGKGKTTLLKHIANRALSIPPNIDVLLCEQEVVADETPAVQAVLRADTKRLKLLEE 393

The following BLAST results are available for this feature:

BLAST of TCONS_00011394 vs. Swiss-Prot (Human)

BLAST of TCONS_00011394 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ABCF1	8.706e-47	70.80	ATP-binding cassette sub-family F member 1 OS=Homo...	[more]

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TCONS_00011394 (transcript) - C. hemisphaerica