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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011391 ID=TCONS_00011391|Name=TCONS_00011391|organism=Clytia hemisphaerica|type=transcript|length=3196bpRun BLAST on NCBI transcript from alignment at sc0000127:337610..346710- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011391 ID=TCONS_00011391|Name=TCONS_00011391|organism=Clytia hemisphaerica|type=transcript|length=9101bp|location=Sequence derived from alignment at sc0000127:337610..346710- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00011391 vs. Swiss-Prot (Human)
Match: SO4C1 (Solute carrier organic anion transporter family member 4C1 OS=Homo sapiens GN=SLCO4C1 PE=1 SV=1) HSP 1 Score: 304.679 bits (779), Expect = 3.482e-89 Identity = 203/661 (30.71%), Postives = 324/661 (49.02%), Query Frame = 3
Query: 207 PRNREKNTSTSSAEQSEDLLDMKTRIEVFSPEDEQDGKDGGRTFLCGFHHWTPQFLQWFANIHWFLPFISIFCLLQGMTVNGFIGASIPHIEREFGLTSTQSGILLASNDLTAILFVLFVSYYGERGHKPTWLGIGSIVTGLGAFIFALPKFMKGAYNPTMSPHGVNYMKHDTCAGNATSAFMELGNMADCDSAPSSNGYLAIFCVANMLMGIGATPLNTLGAAYLDENVSPKNSPIYIGIWYGMLILGPSIGLGSAGAFLKQYTNADGAPPPGITFMHPLWVGRWWYPFATLSWILVFNGFI-LMLFPKKMPGAPRIRQKAIQNGDIPQESSELEEIRKNGFLGFLKSTLILMKNKYLMVVLVATSAELFIVTGLTPFFPKFLNSRFGADPVKAVVMLGTILITGSVVGLVVGSMIMRSFNIKSSVKKATIISIVLAIINIGVSFSHDIPGCDNINLERGALTLNN--------AVCNNNCGCLKEHYNPVCANGITYLSPCVAGCTNKMNMTG---FSGCSCIEAKGGPQAINNQTLGSVRPGKCDQDCKNXXXXXXXXXXXXMSSLIGVTPKNMITLRSVPANQRSFAMGLHFLIVRLLGMLPGPIVVGKIYDRSCMVWKHDMCGHRAFCAEYELISLSSQIRNVALIGFGKILLFFY 2153
P+ +K+ S ++ + K R S + ++G G R F PQ LQ FL + + QG+ VNG + SI +E+ + + S+ +G++ +S D++ L LFVS++GERGHKP WL + + GLGA +F+LP+F G Y + + DTC S + + YL +F + +L+G G TPL TLG A+LD++V S +YIG Y M ILGP+IG G L Y + +T P W+G WW F LSWI ++ I FPK +PG I+ A + Q +S + F + LMKN M ++++TS+E I TG F PKF+ ++FG A + G +LI G+ +G ++G ++ F + + K ++ + + + +SF C+N + + N A CN NC C + +Y PVC +G+ Y SPC AGC+N + + CSCIE K + + GKC+ C L +F+ ++++ + + TP + LR V QRS A+G+ F+++RLLG +PGPI+ G D +C++W + CG + C Y+ I ++ + VA+ K++ F+
Sbjct: 52 PQEPQKSPEPSLPSAPPNVSEEKLR--SLSLSEFEEGSYGWRNF-------HPQCLQRCNTPGGFLLHYCLLAVTQGIVVNGLVNISISTVEKRYEMKSSLTGLISSSYDISFCLLSLFVSFFGERGHKPRWLAFAAFMIGLGALVFSLPQFFSGEYK-------LGSLFEDTCVTTRNSTSCTSSTSSLSN-------YLYVFILGQLLLGAGGTPLYTLGTAFLDDSVPTHKSSLYIGTGYAMSILGPAIGYVLGGQLLTIYIDVAMGESTDVTEDDPRWLGAWWIGF-LLSWIFAWSLIIPFSCFPKHLPGTAEIQ--AGKTSQAHQSNSNADVKFGKSIKDFPAALKNLMKNAVFMCLVLSTSSEALITTGFATFLPKFIENQFGLTSSFAATLGGAVLIPGAALGQILGGFLVSKFRM--TCKNTMKFALFTSGVALTLSFVFMYAKCENEPFAGVSESYNGTGELGNLIAPCNANCNCSRSYYYPVCGDGVQYFSPCFAGCSNPVAHRKPKVYYNCSCIERKTEITSTAETFGFEAKAGKCETHCAKLPIFLCIFFIVIIFTFMAGTPITVSILRCVNHRQRSLALGIQFMVLRLLGTIPGPIIFGFTIDSTCILWDINDCGIKGACWIYDNIKMAHML--VAISVTCKVITMFF 682 The following BLAST results are available for this feature:
BLAST of TCONS_00011391 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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