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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011375 ID=TCONS_00011375|Name=TCONS_00011375|organism=Clytia hemisphaerica|type=transcript|length=1819bp atagttttgaaattttcaaaagattggaCGTGATTAATCAAAGACCTGTG GATATTCCTAATCAATCAAAAAATGTTTCGTTTTTCAGTTGTCAGAGATG ATTCTGATTCACCACAATCGCAAGTGAAACGTGAAAGCCAGGGAGTAGGC GAAGACATCAACGACGCcaataaacaaattcaaaccaAAGATGTTACAAA CGCTGAAAAGCCAACAACGCAGTCAGATGAAGCTTTTCTAATGAGCCGTG GCTACTTTTTACTTTCCAAAGGTATTTTAGGAGAAGGCACTTATTCTAAA GTCAAGAGAGCTTATTCTAAATTTCGTAGTCATGATGTCGCTGTGAAAAT CGTTAACCGTAAAATCGCACCAAAGGATTTCTTGAAACGCTTTTTACcac gcgagttgcaaattattGGACAAGTTAACCATCCTAACATTTGCAAATAC TATGAAGTACTCGATGTTGGTCACAAAGTATTTATTATCATGCAACACGC ACCAAGAGGCGATTTATTAGAATTCATACAATGCAATAGATTTTTGAAGG AGAATGTAGCTAGACCAATGTTTTTACAGATTTCCCATGCTCTGGCGTAC CTACACTCGTACAACATCTTACACAGAGATTTAAAATGTGAAAACATCTT ATTAAGCCATGATTTGAAACCACTTCTAACAGACTTTGGATTTGCTAAAC ATTTACCAAAATTCCATGAACTGAACAAGACGTTTTGTGGAAGTTCAGCA TATGCTCCCATCGAAATTTTAAAAGGAATTCCTTACGATGGACCCAGTGC TGAAGTTTGGAGTTTGGGTTGCATTCTATACATCATTTCAACAGGCACTA TGCCTTTCGACGATTCAAACAAAGCAGATCAAATCCGACAAATGAAAAAA GGTCCAAACTTCACAAGAACAAAACAGATGGTATCGAATGAGTTACGTTC TTTAATAATGTCCATGTTGGAAACTAATCCACAAAAACGAATCACTTTGA ATGAAATCCCAAACCAAGAATGGTCTAAGAAAATTGCAGAAACGAACAAT ACAGCTGATAACGATCAaaaccaatcagaaaatttatgaaaaatatttaa ccATTTAACTTATCTTTCTTAGtatacttttgtaaatattaCCTTTTCTC TATATGTTTTTTAATTTCGAATTANATTTAACCATTTAACTTATCTTTCT TAGtatacttttgtaaatattaCCTTTTCTCTAtatcttttttaatttcg aaTTATATAATTGCATTTTTAATAAACTGCAAATCTCAATTTCTTCCTCC TTCCTAACAGTAACGTTGTGTCCCCTCGCTAAAGCACCCGTTTTTTGGGA CCAAAAGATTCTCTGGTCACACTTACTTAGCGCGTCTTTCCTATTCACAC TCTCCTCCGAAATAGCAGTACTAAGCCAAAAGAGGACAATTTCTAGCTTG TTTTGCTCACATGTCTAACTGGATGGGCGCCAAAATACAAACTTGGAAAT TTGCCTCCGAATTAGCCAATTTTGGATTGAATGTACATCATCAAAACTAT TATCCCACTTTTCGAACTCAATGTTTCGATTTCAAAATTATCTTGCTATA TTTTACCGGGGTCCAAAAATTCCTGACGAAATATTTTCAGTGGCGGAACC ACGAGGTTTCGTAATAGGGCCttggaaacatttttttctcgaatagaaat caagaaaaacttttaaaagtgaCACCATAAAAAACCTCCGgtttcttgaa aaatcaaacattacatgtttttttttttataagcattgcacttataagca tatctaggctcagatgtgg Run BLAST on NCBI protein sequence of TCONS_00011375-protein >TCONS_00011375-protein ID=TCONS_00011375-protein|Name=TCONS_00011375-protein|organism=Clytia hemisphaerica|type=polypeptide|length=338bp
MFRFSVVRDDSDSPQSQVKRESQGVGEDINDANKQIQTKDVTNAEKPTTQ SDEAFLMSRGYFLLSKGILGEGTYSKVKRAYSKFRSHDVAVKIVNRKIAP KDFLKRFLPRELQIIGQVNHPNICKYYEVLDVGHKVFIIMQHAPRGDLLE FIQCNRFLKENVARPMFLQISHALAYLHSYNILHRDLKCENILLSHDLKP LLTDFGFAKHLPKFHELNKTFCGSSAYAPIEILKGIPYDGPSAEVWSLGC ILYIISTGTMPFDDSNKADQIRQMKKGPNFTRTKQMVSNELRSLIMSMLE TNPQKRITLNEIPNQEWSKKIAETNNTADNDQNQSENL Run BLAST on NCBI transcript from alignment at sc0000127:68597..71780- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011375 ID=TCONS_00011375|Name=TCONS_00011375|organism=Clytia hemisphaerica|type=transcript|length=3184bp|location=Sequence derived from alignment at sc0000127:68597..71780- (Clytia hemisphaerica) ATAGTTTTGAAATTTTCAAAAGATTGGACGTGATTAATCAAAGACCTGTG
GATATTCCTAATCAATCAAAAAATGTTTCGTTTTTCAGTTGTCAGAGATG
ATTCTGATTCACCACAATCGCAAGTGAAACGTGAAAGCCAGGGAGTAGGC
GAAGACATCAACGACGCCAATAAACAAATTCAAACCAAAGATGTTACAAA
CGCTGAAAAGCCAACAACGCAGTCAGATGAAGCTTTTCTAATGAGCCGTG
GCTACTTTTTACTTTCCAAAGGTATTTTAGGAGAAGGCACTTATTCTAAA
GTCAAGAGAGCTTATTCTAAATTTCGTAGTCATGATGTCGCTGTGAAAAT
CGTTAACCGTAAAATCGCACCAAAGGATTTCTTGAAACGCTTTTTACCAC
GCGAGTTGCAAATTATTGGACAAGTTAACCATCCTAACATTTGCAAATAC
TATGAAGTACTCGATGTTGGTCACAAAGTATTTATTATCATGCAACACGC
ACCAAGAGGCGATTTATTAGAATTCATACAATGCAATAGATTTTTGAAGG
AGAATGTAGCTAGACCAATGTTTTTACAGGTATGAACAAAAAAATATATT
ATAGACCCCGATGAAGAAAGTCATTTTTACCTTTGTTCCATCAAGTCAAC
CCCCCCTTTTGACAATAATTACATGTTTTTTAAAGTAAGTGTACCAAAAA
CTGCTCACAGAATAAAACACGTATGTGCTCCTTTGCTCCTATGGAGTAAA
ACAAACCCAAATAAAAAATCTACAAACTCAGTGATCGGCCATAAACACAA
GGGAAAGTATTAAAGGTTTTATTTTTACATAAGTGTTCCCGTTTCATATC
AGACACATATTTCATACCAGGACAGTTTCTGTCTATTGTTATATTATGCT
GATATAAGCATAAAAAGGTTTTTCTTTTCCTCTTTCTGACCAATCTTGCT
CCACAATCATGTCAATCCAATATGGAAAAGCTTGTGAATTAAAATTGATG
AGTAAGCAAACGATATCACTCTCATTTAAAAACAAAACCTTTAAGGTAAA
AATGGGTTACACTGTCTGCCAAGGAATTCATATTTTATAAAGAATATTCG
GGTATTCAAAAAAACTCATGCTAAAAATATTTACAATTTAAAATTAAAAA
TGCGTTTAAAAATAAATATACATACAAATAAGAAAATTAATGTTAGGGAT
ATACTTGCTCCTTTGCCAGAGTCTAAATATAACCTCGAATTTGGACTGCA
GTAAATGACCTTTGAAATAATCCAGCATTTCTTATTTCAGTTTTGGATTC
TTAGTATAGTTATGGTTTACGTCGAAACATCAATTTGAATTTTTTCCTAT
TCTTCATCAACTCCCTTTTCACAGACCAACTGAGAAAAATTCATCAACTC
CCTTCTCACAGAAGGCCAAAATATTGGGGTAAGACTGTATAACTAACCTA
TTCAATGTTTCTGTTGTTATAGATTTCCCATGCTCTGGCGTACCTACACT
CGTACAACATCTTACACAGAGATTTAAAATGTGAAAACATCTTATTAAGC
CATGATTTGAAACCACTTCTAACAGACTTTGGATTTGCTAAACATTTACC
AAAATTCCATGAACTGAACAAGACGTTTTGTGGAAGTTCAGCATATGCTC
CCATCGAAATTTTAAAAGGTGAGATTTGTTTTGCATGACTTTAAAAATTT
TCCTTAACAAAATCCAGGGGAAGTTAGGCAAAAATAGGCTTGGTATGTGC
ATTTCTAAGCGTTTCAAAAATAACAAAAAGTCTCCCTAAGGATTTTTCGA
AAATCGTCCTGTTAGGGTCACTTTTTCTCTAAAGTTTGGTCTCTCTAAGG
GTCGGTCTTCTGAGGTCTGGTCAGCACATTTTCTCCAGCCCTCCCTCATC
CCCTGTACGAAATAAACTCTTTTCTTGAGATACTGTAAACTATTTCAGAG
TCTATTTTTCATAGGTTTATGTTCTTGCTCAAGTAACTCGTCGGATCGTG
TCTTTGTATCAAACATTGCTAACAAAATACATTAAATTTCTGTAACTATC
CTTTCAAATTCTCTTGAAGGGTGAAGTCGAGTCATCGATTCTCAGTCCAA
TATATAGAAAAAATAATAAGTTGATTCAATATCCTTATAGGAATTCCTTA
CGATGGACCCAGTGCTGAAGTTTGGAGTTTGGGTTGCATTCTATACATCA
TTTCAACAGGCACTATGCCTTTCGACGATTCAAACAAAGCAGATCAAATC
CGACAAATGAAAAAAGGTCCAAACTTCACAAGAACAAAACAGATGGTATC
GAATGAGTTACGTTCTTTAATAATGTCCATGTTGGAAACTAATCCACAAA
AACGAATCACTTTGAATGAAATCCCAAACCAAGAATGGTCTAAGAAAATT
GCAGAAACGAACAATACAGCTGATAACGATCAAAACCAATCAGAAAATTT
ATGAAAAATATTTAACCATTTAACTTATCTTTCTTAGTATACTTTTGTAA
ATATTACCTTTTCTCTATATGTTTTTTAATTTCGAATTANATTTAACCAT
TTAACTTATCTTTCTTAGTATACTTTTGTAAATATTACCTTTTCTCTATA
TCTTTTTTAATTTCGAATTATATAATTGCATTTTTAATAAACTGCAAATC
TCAATTTCTTCCTCCTTCCTAACAGTAACGTTGTGTCCCCTCGCTAAAGC
ACCCGTTTTTTGGGACCAAAAGATTCTCTGGTCACACTTACTTAGCGCGT
CTTTCCTATTCACACTCTCCTCCGAAATAGCAGTACTAAGCCAAAAGAGG
ACAATTTCTAGCTTGTTTTGCTCACATGTCTAACTGGATGGGCGCCAAAA
TACAAACTTGGAAATTTGCCTCCGAATTAGCCAATTTTGGATTGAATGTA
CATCATCAAAACTATTATCCCACTTTTCGAACTCAATGTTTCGATTTCAA
AATTATCTTGCTATATTTTACCGGGGTCCAAAAATTCCTGACGAAATATT
TTCAGTGGCGGAACCACGAGGTTTCGTAATAGGGCCTTGGAAACATTTTT
TTCTCGAATAGAAATCAAGAAAAACTTTTAAAAGTGACACCATAAAAAAC
CTCCGGTTTCTTGAAAAATCAAACATTACATGTTTTTTTTTTTATAAGCA
TTGCACTTATAAGCATATCTAGGCTCAGATGTGG Coding sequence (CDS) from alignment at sc0000127:68597..71780- >TCONS_00011375 ID=TCONS_00011375|Name=TCONS_00011375|organism=Clytia hemisphaerica|type=CDS|length=3051bp|location=Sequence derived from alignment at sc0000127:68597..71780- (Clytia hemisphaerica) GAATTCCTTACGATGGACCCAGTGCTGAAGTTTGGAGTTTGGGTTGCATT CTATACATCATTTCAACAGGCACTATGCCTTTCGACGATTCAAACAAAGC AGATCAAATCCGACAAATGAAAAAAGGTCCAAACTTCACAAGAACAAAAC AGATGGTATCGAATGAGTTACGTTCTTTAATAATGTCCATGTTGGAAACT AATCCACAAAAACGAATCACTTTGAATGAAATCCCAAACCAAGAATGGTC TAAGAAAATTGCAGAAACGAACAATACAGCTGATAACGATCAAAACCAAT CAGAAAATTTATGAATTTCCCATGCTCTGGCGTACCTACACTCGTACAAC ATCTTACACAGAGATTTAAAATGTGAAAACATCTTATTAAGCCATGATTT GAAACCACTTCTAACAGACTTTGGATTTGCTAAACATTTACCAAAATTCC ATGAACTGAACAAGACGTTTTGTGGAAGTTCAGCATATGCTCCCATCGAA ATTTTAAAAGATGTTTCGTTTTTCAGTTGTCAGAGATGATTCTGATTCAC CACAATCGCAAGTGAAACGTGAAAGCCAGGGAGTAGGCGAAGACATCAAC GACGCCAATAAACAAATTCAAACCAAAGATGTTACAAACGCTGAAAAGCC AACAACGCAGTCAGATGAAGCTTTTCTAATGAGCCGTGGCTACTTTTTAC TTTCCAAAGGTATTTTAGGAGAAGGCACTTATTCTAAAGTCAAGAGAGCT TATTCTAAATTTCGTAGTCATGATGTCGCTGTGAAAATCGTTAACCGTAA AATCGCACCAAAGGATTTCTTGAAACGCTTTTTACCACGCGAGTTGCAAA TTATTGGACAAGTTAACCATCCTAACATTTGCAAATACTATGAAGTACTC GATGTTGGTCACAAAGTATTTATTATCATGCAACACGCACCAAGAGGCGA TTTATTAGAATTCATACAATGCAATAGATTTTTGAAGGAGAATGTAGCTA GACCAATGTTTTTACAGGAATTCCTTACGATGGACCCAGTGCTGAAGTTT GGAGTTTGGGTTGCATTCTATACATCATTTCAACAGGCACTATGCCTTTC GACGATTCAAACAAAGCAGATCAAATCCGACAAATGAAAAAAGGTCCAAA CTTCACAAGAACAAAACAGATGGTATCGAATGAGTTACGTTCTTTAATAA TGTCCATGTTGGAAACTAATCCACAAAAACGAATCACTTTGAATGAAATC CCAAACCAAGAATGGTCTAAGAAAATTGCAGAAACGAACAATACAGCTGA TAACGATCAAAACCAATCAGAAAATTTATGAATTTCCCATGCTCTGGCGT ACCTACACTCGTACAACATCTTACACAGAGATTTAAAATGTGAAAACATC TTATTAAGCCATGATTTGAAACCACTTCTAACAGACTTTGGATTTGCTAA ACATTTACCAAAATTCCATGAACTGAACAAGACGTTTTGTGGAAGTTCAG CATATGCTCCCATCGAAATTTTAAAAGATGTTTCGTTTTTCAGTTGTCAG AGATGATTCTGATTCACCACAATCGCAAGTGAAACGTGAAAGCCAGGGAG TAGGCGAAGACATCAACGACGCCAATAAACAAATTCAAACCAAAGATGTT ACAAACGCTGAAAAGCCAACAACGCAGTCAGATGAAGCTTTTCTAATGAG CCGTGGCTACTTTTTACTTTCCAAAGGTATTTTAGGAGAAGGCACTTATT CTAAAGTCAAGAGAGCTTATTCTAAATTTCGTAGTCATGATGTCGCTGTG AAAATCGTTAACCGTAAAATCGCACCAAAGGATTTCTTGAAACGCTTTTT ACCACGCGAGTTGCAAATTATTGGACAAGTTAACCATCCTAACATTTGCA AATACTATGAAGTACTCGATGTTGGTCACAAAGTATTTATTATCATGCAA CACGCACCAAGAGGCGATTTATTAGAATTCATACAATGCAATAGATTTTT GAAGGAGAATGTAGCTAGACCAATGTTTTTACAGGAATTCCTTACGATGG ACCCAGTGCTGAAGTTTGGAGTTTGGGTTGCATTCTATACATCATTTCAA CAGGCACTATGCCTTTCGACGATTCAAACAAAGCAGATCAAATCCGACAA ATGAAAAAAGGTCCAAACTTCACAAGAACAAAACAGATGGTATCGAATGA GTTACGTTCTTTAATAATGTCCATGTTGGAAACTAATCCACAAAAACGAA TCACTTTGAATGAAATCCCAAACCAAGAATGGTCTAAGAAAATTGCAGAA ACGAACAATACAGCTGATAACGATCAAAACCAATCAGAAAATTTATGAAT TTCCCATGCTCTGGCGTACCTACACTCGTACAACATCTTACACAGAGATT TAAAATGTGAAAACATCTTATTAAGCCATGATTTGAAACCACTTCTAACA GACTTTGGATTTGCTAAACATTTACCAAAATTCCATGAACTGAACAAGAC GTTTTGTGGAAGTTCAGCATATGCTCCCATCGAAATTTTAAAAGATGTTT CGTTTTTCAGTTGTCAGAGATGATTCTGATTCACCACAATCGCAAGTGAA ACGTGAAAGCCAGGGAGTAGGCGAAGACATCAACGACGCCAATAAACAAA TTCAAACCAAAGATGTTACAAACGCTGAAAAGCCAACAACGCAGTCAGAT GAAGCTTTTCTAATGAGCCGTGGCTACTTTTTACTTTCCAAAGGTATTTT AGGAGAAGGCACTTATTCTAAAGTCAAGAGAGCTTATTCTAAATTTCGTA GTCATGATGTCGCTGTGAAAATCGTTAACCGTAAAATCGCACCAAAGGAT TTCTTGAAACGCTTTTTACCACGCGAGTTGCAAATTATTGGACAAGTTAA CCATCCTAACATTTGCAAATACTATGAAGTACTCGATGTTGGTCACAAAG TATTTATTATCATGCAACACGCACCAAGAGGCGATTTATTAGAATTCATA CAATGCAATAGATTTTTGAAGGAGAATGTAGCTAGACCAATGTTTTTACA G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00011375-exon-sc0000127-1575043694:71202..71780 | TCONS_00011375-exon-sc0000127-1575043694:71202..71780 | Clytia hemisphaerica | exon |
TCONS_00011375-exon-sc0000127-1575043694:70113..70308 | TCONS_00011375-exon-sc0000127-1575043694:70113..70308 | Clytia hemisphaerica | exon |
TCONS_00011375-exon-sc0000127-1575043694:68597..69640 | TCONS_00011375-exon-sc0000127-1575043694:68597..69640 | Clytia hemisphaerica | exon |
TCONS_00011375-exon-sc0000127-1510915933:71202..71780 | TCONS_00011375-exon-sc0000127-1510915933:71202..71780 | Clytia hemisphaerica | exon |
TCONS_00011375-exon-sc0000127-1510915933:70113..70308 | TCONS_00011375-exon-sc0000127-1510915933:70113..70308 | Clytia hemisphaerica | exon |
TCONS_00011375-exon-sc0000127-1510915933:68597..69640 | TCONS_00011375-exon-sc0000127-1510915933:68597..69640 | Clytia hemisphaerica | exon |
TCONS_00011375-exon-sc0000127-1491911889:71202..71780 | TCONS_00011375-exon-sc0000127-1491911889:71202..71780 | Clytia hemisphaerica | exon |
TCONS_00011375-exon-sc0000127-1491911889:70113..70308 | TCONS_00011375-exon-sc0000127-1491911889:70113..70308 | Clytia hemisphaerica | exon |
TCONS_00011375-exon-sc0000127-1491911889:68597..69640 | TCONS_00011375-exon-sc0000127-1491911889:68597..69640 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000127 | supercontig | sc0000127:68597..71780 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
Term | Definition |
GO:0004672 | protein kinase activity |
GO:0005524 | ATP binding |
Vocabulary: Biological Process
Term | Definition |
GO:0006468 | protein phosphorylation |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0006468 |
protein phosphorylation |
molecular_function |
GO:0005524 |
ATP binding |
molecular_function |
GO:0004672 |
protein kinase activity |
Blast
BLAST of TCONS_00011375 vs. Swiss-Prot (Human)
Match: TSSK2 (Testis-specific serine/threonine-protein kinase 2 OS=Homo sapiens GN=TSSK2 PE=1 SV=2) HSP 1 Score: 236.498 bits (602), Expect = 4.372e-71 Identity = 124/273 (45.42%), Postives = 178/273 (65.20%), Query Frame = 1
Query: 226 DEAFLMSRGYFLLSKGI-LGEGTYSKVKRAYSKFRSHDVAVKIVNRKIAPKDFLKRFLPRELQIIGQVNHPNICKYYEVLDVGH-KVFIIMQHAPRGDLLEFIQCNRFLKENVARPMFLQISHALAYLHSYNILHRDLKCENILLSHDLKPLLTDFGFAKHLPKFHE----LNKTFCGSSAYAPIEILKGIPYDGPSAEVWSLGCILYIISTGTMPFDDSNKADQIR-QMKKGPNFTRTKQMVSNELRSLIMSMLETNPQKRITLNEIPNQEW 1023
D L +GY + GI LG+G+Y+KVK AYS+ +VAVKI++RK P DF++RFLPRE+ I+ VNH +I K YE+ + +++IIM+ +GDLLEFI+C L E+VAR MF Q+S A+ Y H +I+HRDLKCEN+LL D L+DFGF+K + L+KTFCGS+AYA E+L+ IPY ++WSLG ILYI+ G+MP+DDS+ +R Q + +F R+K + E + LI ML+ + +R+ ++EI + W
Sbjct: 3 DATVLRKKGYIV---GINLGKGSYAKVKSAYSERLKFNVAVKIIDRKKTPTDFVERFLPREMDILATVNHGSIIKTYEIFETSDGRIYIIMELGVQGDLLEFIKCQGALHEDVARKMFRQLSSAVKYCHDLDIVHRDLKCENLLLDKDFNIKLSDFGFSKRCLRDSNGRIILSKTFCGSAAYAAPEVLQSIPYQPKVYDIWSLGVILYIMVCGSMPYDDSDIRKMLRIQKEHRVDFPRSKNLTC-ECKDLIYRMLQPDVSQRLHIDEILSHSW 271
The following BLAST results are available for this feature:
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