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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011374 ID=TCONS_00011374|Name=TCONS_00011374|organism=Clytia hemisphaerica|type=transcript|length=2018bp
CAAAAACTGCTCACAGAATAAAACACGTATGTGCTCCTTTGCTCCTATGG
AGTAAAACAAACCCaaataaaaaatctacaaaCTCAGTGATCGGCCATAA
ACACAAGGGAAagtattaaaggttttatttttacataagtgttcccgttt
catatcagacacatatttcataccaggacagtttctgtctattgttatat
tatgctgatataagcataaaaaggtttttcttttcctctttctgaccaat
cttgctccacaatCATGTCAATCCAATAtggaaaagcttgtgaattaaaa
ttgatgagtaagcaaacgatatcactctcatttaaaaacaaaacctttaa
ggtaAAAATGGGTTACACTGTCTGCCAAGGAATTCATATTTTATAAAGAA
TATTCGGGTATTCAAAAAAACTCATgctaaaaatatttacaatttaaaat
taaaaatgcgtttaaaaataaatatacataCAAATAAGAAAATTAATGTT
AGGGATATACTTGCTCCTTTGCCAGAGTCTAAATATAACCTCGAATTTGG
ACTGCAGTAAATGACCTTTGAAATAATCCAGCATTTCTTATTTCAGTTTT
GGATTCTTAGTATAGTTATGGTTTACGTCGAAAcatcaatttgaattttt
tcctatTCTTCATCAACTCCCTTTTCACAGACCAACTGAGAAAAATTCAT
caactcccttctcacagaagGCCAAAATATTGGGGTAAGACTGTATAACT
AACCTATTCAATGTTTCTGTTGTTATAGATTTCCCATGCTCTGGCGTACC
TACACTCGTACAACATCTTACACAGAGATTTAAAATGTGAAAACATCTTA
TTAAGCCATGATTTGAAACCACTTCTAACAGACTTTGGATTTGCTAAACA
TTTACCAAAATTCCATGAACTGAACAAGACGTTTTGTGGAAGTTCAGCAT
ATGCTCCCATCGAAATTTTAAAAGGAATTCCTTACGATGGACCCAGTGCT
GAAGTTTGGAGTTTGGGTTGCATTCTATACATCATTTCAACAGGCACTAT
GCCTTTCGACGATTCAAACAAAGCAGATCAAATCCGACAAATGAAAAAAG
GTCCAAACTTCACAAGAACAAAACAGATGGTATCGAATGAGTTACGTTCT
TTAATAATGTCCATGTTGGAAACTAATCCACAAAAACGAATCACTTTGAA
TGAAATCCCAAACCAAGAATGGTCTAAGAAAATTGCAGAAACGAACAATA
CAGCTGATAACGATCAaaaccaatcagaaaatttatgaaaaatatttaac
cATTTAACTTATCTTTCTTAGtatacttttgtaaatattaCCTTTTCTCT
ATATGTTTTTTAATTTCGAATTANATTTAACCATTTAACTTATCTTTCTT
AGtatacttttgtaaatattaCCTTTTCTCTAtatcttttttaatttcga
aTTATATAATTGCATTTTTAATAAACTGCAAATCTCAATTTCTTCCTCCT
TCCTAACAGTAACGTTGTGTCCCCTCGCTAAAGCACCCGTTTTTTGGGAC
CAAAAGATTCTCTGGTCACACTTACTTAGCGCGTCTTTCCTATTCACACT
CTCCTCCGAAATAGCAGTACTAAGCCAAAAGAGGACAATTTCTAGCTTGT
TTTGCTCACATGTCTAACTGGATGGGCGCCAAAATACAAACTTGGAAATT
TGCCTCCGAATTAGCCAATTTTGGATTGAATGTACATCATCAAAACTATT
ATCCCACTTTTCGAACTCAATGTTTCGATTTCAAAATTATCTTGCTATAT
TTTACCGGGGTCCAAAAATTCCTGACGAAATATTTTCAGTGGCGGAACCA
CGAGGTTTCGTAATAGGGCCttggaaacatttttttctcgaatagaaatc
aagaaaaacttttaaaagtgaCACCATAAAAAACCTCCGgtttcttgaaa
aatcaaacattacatgtttttttttttataagcattgcacttataagcat
atctaggctcagatgtgg Run BLAST on NCBI transcript from alignment at sc0000127:68597..71086- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011374 ID=TCONS_00011374|Name=TCONS_00011374|organism=Clytia hemisphaerica|type=transcript|length=2490bp|location=Sequence derived from alignment at sc0000127:68597..71086- (Clytia hemisphaerica)
CAAAAACTGCTCACAGAATAAAACACGTATGTGCTCCTTTGCTCCTATGG
AGTAAAACAAACCCAAATAAAAAATCTACAAACTCAGTGATCGGCCATAA
ACACAAGGGAAAGTATTAAAGGTTTTATTTTTACATAAGTGTTCCCGTTT
CATATCAGACACATATTTCATACCAGGACAGTTTCTGTCTATTGTTATAT
TATGCTGATATAAGCATAAAAAGGTTTTTCTTTTCCTCTTTCTGACCAAT
CTTGCTCCACAATCATGTCAATCCAATATGGAAAAGCTTGTGAATTAAAA
TTGATGAGTAAGCAAACGATATCACTCTCATTTAAAAACAAAACCTTTAA
GGTAAAAATGGGTTACACTGTCTGCCAAGGAATTCATATTTTATAAAGAA
TATTCGGGTATTCAAAAAAACTCATGCTAAAAATATTTACAATTTAAAAT
TAAAAATGCGTTTAAAAATAAATATACATACAAATAAGAAAATTAATGTT
AGGGATATACTTGCTCCTTTGCCAGAGTCTAAATATAACCTCGAATTTGG
ACTGCAGTAAATGACCTTTGAAATAATCCAGCATTTCTTATTTCAGTTTT
GGATTCTTAGTATAGTTATGGTTTACGTCGAAACATCAATTTGAATTTTT
TCCTATTCTTCATCAACTCCCTTTTCACAGACCAACTGAGAAAAATTCAT
CAACTCCCTTCTCACAGAAGGCCAAAATATTGGGGTAAGACTGTATAACT
AACCTATTCAATGTTTCTGTTGTTATAGATTTCCCATGCTCTGGCGTACC
TACACTCGTACAACATCTTACACAGAGATTTAAAATGTGAAAACATCTTA
TTAAGCCATGATTTGAAACCACTTCTAACAGACTTTGGATTTGCTAAACA
TTTACCAAAATTCCATGAACTGAACAAGACGTTTTGTGGAAGTTCAGCAT
ATGCTCCCATCGAAATTTTAAAAGGTGAGATTTGTTTTGCATGACTTTAA
AAATTTTCCTTAACAAAATCCAGGGGAAGTTAGGCAAAAATAGGCTTGGT
ATGTGCATTTCTAAGCGTTTCAAAAATAACAAAAAGTCTCCCTAAGGATT
TTTCGAAAATCGTCCTGTTAGGGTCACTTTTTCTCTAAAGTTTGGTCTCT
CTAAGGGTCGGTCTTCTGAGGTCTGGTCAGCACATTTTCTCCAGCCCTCC
CTCATCCCCTGTACGAAATAAACTCTTTTCTTGAGATACTGTAAACTATT
TCAGAGTCTATTTTTCATAGGTTTATGTTCTTGCTCAAGTAACTCGTCGG
ATCGTGTCTTTGTATCAAACATTGCTAACAAAATACATTAAATTTCTGTA
ACTATCCTTTCAAATTCTCTTGAAGGGTGAAGTCGAGTCATCGATTCTCA
GTCCAATATATAGAAAAAATAATAAGTTGATTCAATATCCTTATAGGAAT
TCCTTACGATGGACCCAGTGCTGAAGTTTGGAGTTTGGGTTGCATTCTAT
ACATCATTTCAACAGGCACTATGCCTTTCGACGATTCAAACAAAGCAGAT
CAAATCCGACAAATGAAAAAAGGTCCAAACTTCACAAGAACAAAACAGAT
GGTATCGAATGAGTTACGTTCTTTAATAATGTCCATGTTGGAAACTAATC
CACAAAAACGAATCACTTTGAATGAAATCCCAAACCAAGAATGGTCTAAG
AAAATTGCAGAAACGAACAATACAGCTGATAACGATCAAAACCAATCAGA
AAATTTATGAAAAATATTTAACCATTTAACTTATCTTTCTTAGTATACTT
TTGTAAATATTACCTTTTCTCTATATGTTTTTTAATTTCGAATTANATTT
AACCATTTAACTTATCTTTCTTAGTATACTTTTGTAAATATTACCTTTTC
TCTATATCTTTTTTAATTTCGAATTATATAATTGCATTTTTAATAAACTG
CAAATCTCAATTTCTTCCTCCTTCCTAACAGTAACGTTGTGTCCCCTCGC
TAAAGCACCCGTTTTTTGGGACCAAAAGATTCTCTGGTCACACTTACTTA
GCGCGTCTTTCCTATTCACACTCTCCTCCGAAATAGCAGTACTAAGCCAA
AAGAGGACAATTTCTAGCTTGTTTTGCTCACATGTCTAACTGGATGGGCG
CCAAAATACAAACTTGGAAATTTGCCTCCGAATTAGCCAATTTTGGATTG
AATGTACATCATCAAAACTATTATCCCACTTTTCGAACTCAATGTTTCGA
TTTCAAAATTATCTTGCTATATTTTACCGGGGTCCAAAAATTCCTGACGA
AATATTTTCAGTGGCGGAACCACGAGGTTTCGTAATAGGGCCTTGGAAAC
ATTTTTTTCTCGAATAGAAATCAAGAAAAACTTTTAAAAGTGACACCATA
AAAAACCTCCGGTTTCTTGAAAAATCAAACATTACATGTTTTTTTTTTTA
TAAGCATTGCACTTATAAGCATATCTAGGCTCAGATGTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011374-exon-sc0000127-1575043694:70113..71086 | TCONS_00011374-exon-sc0000127-1575043694:70113..71086 | Clytia hemisphaerica | exon |
| TCONS_00011374-exon-sc0000127-1575043694:68597..69640 | TCONS_00011374-exon-sc0000127-1575043694:68597..69640 | Clytia hemisphaerica | exon |
| TCONS_00011374-exon-sc0000127-1510915933:70113..71086 | TCONS_00011374-exon-sc0000127-1510915933:70113..71086 | Clytia hemisphaerica | exon |
| TCONS_00011374-exon-sc0000127-1510915933:68597..69640 | TCONS_00011374-exon-sc0000127-1510915933:68597..69640 | Clytia hemisphaerica | exon |
| TCONS_00011374-exon-sc0000127-1491911889:70113..71086 | TCONS_00011374-exon-sc0000127-1491911889:70113..71086 | Clytia hemisphaerica | exon |
| TCONS_00011374-exon-sc0000127-1491911889:68597..69640 | TCONS_00011374-exon-sc0000127-1491911889:68597..69640 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000127 | supercontig | sc0000127:68597..71086 - |
Blast
BLAST of TCONS_00011374 vs. Swiss-Prot (Human)
Match: TSSK6 (Testis-specific serine/threonine-protein kinase 6 OS=Homo sapiens GN=TSSK6 PE=1 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 1.322e-34 Identity = 63/149 (42.28%), Postives = 98/149 (65.77%), Query Frame = 2
Query: 779 ISHALAYLHSYNILHRDLKCENILLSHDLKPL-LTDFGFAKHLPKFHELNKTFCGSSAYAPIEILKGIPYDGPSAEVWSLGCILYIISTGTMPFDDSNKADQIRQMKKGPNFTRTKQMVSNELRSLIMSMLETNPQKRITLNEIPNQEW 1222
I+ A+ YLH ++++HRDLKCEN+LLS D + + LTDFGF + + +L+ T+CGS+AYA E+L GIPYD +VWS+G +LY++ TG MPFDDS+ A R+ K+G + ++ S ++LI +L+ +P R + ++ W
Sbjct: 119 IAGAVRYLHDHHLVHRDLKCENVLLSPDERRVKLTDFGFGRQAHGYPDLSTTYCGSAAYASPEVLLGIPYDPKKYDVWSMGVVLYVMVTGCMPFDDSDIAGLPRRQKRGVLYPEGLEL-SERCKALIAELLQFSPSARPSAGQVARNCW 266
The following BLAST results are available for this feature:
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