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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011373 ID=TCONS_00011373|Name=TCONS_00011373|organism=Clytia hemisphaerica|type=transcript|length=2660bpRun BLAST on NCBI protein sequence of TCONS_00011373-protein >TCONS_00011373-protein ID=TCONS_00011373-protein|Name=TCONS_00011373-protein|organism=Clytia hemisphaerica|type=polypeptide|length=494bp MAMIFRRPQYVFRTANAISAPRQMSSTSAVEDGDYTGPVMKTSMPGPHSQRun BLAST on NCBI transcript from alignment at sc0000127:38397..51031- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011373 ID=TCONS_00011373|Name=TCONS_00011373|organism=Clytia hemisphaerica|type=transcript|length=12635bp|location=Sequence derived from alignment at sc0000127:38397..51031- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000127:38397..51031- >TCONS_00011373 ID=TCONS_00011373|Name=TCONS_00011373|organism=Clytia hemisphaerica|type=CDS|length=25245bp|location=Sequence derived from alignment at sc0000127:38397..51031- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00011373 vs. Swiss-Prot (Human)
Match: GABT (4-aminobutyrate aminotransferase, mitochondrial OS=Homo sapiens GN=ABAT PE=1 SV=3) HSP 1 Score: 468.774 bits (1205), Expect = 4.882e-155 Identity = 237/496 (47.78%), Postives = 322/496 (64.92%), Query Frame = 2
Query: 140 QKMAMIFRRPQYVFRTANAISAPRQMSSTSAVED--GDYTGPVMKTSMPGPHSQQKMQEM-VGMNASLAAVPFFVDYDKCQGNYIVDADGNVLLDAFSQISSLPLGYNHPALTKAVHSRNVTNYLVNRPAMGILPPVDTKQLLDNTLLRVKPTGLNYVQTMMCGSCGVENAFKAAMIKYRADQRGEDLPTDIELDTCMRSEKPGTPDLTVLSFKTAFHGRTFGSLSATRSKGIHRVDIPLHDWPVADFPLLKYPLEEHEAENREIEDRAIESAREQILKYNAAGKHVAAAIVEPIQAEGGDNFATPYFFKELQKLCKELKVAFIVDEVQTGGGPSGKFWAHEHWDLPEAPDMVTFAKKLLIGGYYYKEEFLPKQAYRIFNTWMGDPARNALLETVLDTIDEDKLLERTQSAGNVLMNGLSMLENKYPDLIHDTRGLGTFLAVSCKTTETRDKLSTTXXXXXXXXXXCGAASIRLRPALIFNDSHANATLEILEDAL 1618
Q++A F Q+ +R + R +S +A D DY GP+MKT +PGP SQ+ M+++ + NA AV FF +Y++ +GNY+VD DGN +LD +SQISS+P+GY+HPAL K + + VNRPA+GILPP + + L +LL V P G++ + TM CGSC ENA K + YR+ +RG+ + EL+TCM ++ PG PD ++LSF AFHGRT G L+ T SK IH++DIP DWP+A FP LKYPLEE EN++ E R +E + I+KY K VA IVEPIQ+EGGDN A+ FF++L+ + ++ AF+VDEVQTGGG +GKFWAHEHW L + D++TF+KK++ GG+++KEEF P YRIFNTW+GDP++N LL V++ I + LL AG L+ GL L+ +YP I RG GTF + R+KL RN G+ GGCG SIR RP L+F D HA+ L I D L
Sbjct: 8 QRLACSF---QHSYRLL--VPGSRHISQAAAKVDVEFDYDGPLMKTEVPGPRSQELMKQLNIIQNAE--AVHFFCNYEESRGNYLVDVDGNRMLDLYSQISSVPIGYSHPALLKLIQQPQNASMFVNRPALGILPPENFVEKLRQSLLSVAPKGMSQLITMACGSCSNENALKTIFMWYRSKERGQRGFSQEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDIARKHGCAFLVDEVQTGGGCTGKFWAHEHWGLDDPADVMTFSKKMMTGGFFHKEEFRPNAPYRIFNTWLGDPSKNLLLAEVINIIKREDLLNNAAHAGKALLTGLLDLQARYPQFISRVRGRGTFCSFDTPDDSIRNKLILIARNKGVVLGGCGDKSIRFRPTLVFRDHHAHLFLNIFSDIL 496 The following BLAST results are available for this feature:
BLAST of TCONS_00011373 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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