TCONS_00011372 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011372
Unique NameTCONS_00011372
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length674

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011372 ID=TCONS_00011372|Name=TCONS_00011372|organism=Clytia hemisphaerica|type=transcript|length=674bp
CAGAATCGACCAAGAAGAATAAGGGAAAAAAGAATTAGGAACAAGataTC
AATCCTTTAAGGCAATGTTTTTAAGGTATGATTATCCACATAAATTTTCT
CAACGTTTTCATGAAGGTTTATTATTACATTCTGCCTGAACAGTTTTCTC
CGAAAGTAGTCGATGCAATCTTTGAGAAAAGTTTTCTGCATGATTTTCTG
TATTAAATCTTTCCCGAAAAACAGTTATCTCCGTTGATGTTTCGTTTTGG
AAAACGATCGCATTTCAAGTATTTTGGCAATTGAAAACCAAACTCTTCCA
TCAGCTGACTGCAACCATTTGTAGCGTCCTTACAATACTCTCGACAAGGT
GGCAAAACTTTGTTCAGTTCACATTTTGGGAAATAATATGaacaaatgaa
attttgcatttgATCTGAGCAGCCTGCTTTGAACAGAGGTTCATAAAGTT
GAACTTCAAGAATTGAATTTTTGACATAGCTGATTGATGACTTTTCAATG
GAAGTATATTTGTAGGGTAGTTTATTGCAAACATTTGATGATTTCCTTAT
GAGTTCTTGACATTGATTTGGTTTGGTTGCCATTTCCGATGTCTTTGGTT
TTAGGGAAGTTGAAAAAATCGGTAAGTTTGTTGTTATTCGAGTCATTTTT
GTTGTCATTTGAGTTGCTTTTGTT
Run BLAST on NCBI

transcript from alignment at sc0000127:21670..22561-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011372 ID=TCONS_00011372|Name=TCONS_00011372|organism=Clytia hemisphaerica|type=transcript|length=892bp|location=Sequence derived from alignment at sc0000127:21670..22561- (Clytia hemisphaerica)
CAGAATCGACCAAGAAGAATAAGGGAAAAAAGAATTAGGAACAAGGTAAT
CCACTTTAATTCTTCTCTTTTTTTTCAAATACAGATGAACAAATGAACAA
TTGGTTAGTGTAATTTAACAAAATTAAGAAATGTTGCCTTGTGAGAAAGC
TGATAACCCCCCATGATAAAGCTCTCATATTATTTAATTAGTATTCTAAT
TTTGTTTCTATTCATACAGCGTCGATCGGTTTGTAAGTATCTCTCGTTTT
TTTTGTTTTTTAGATATCAATCCTTTAAGGCAATGTTTTTAAGGTATGAT
TATCCACATAAATTTTCTCAACGTTTTCATGAAGGTTTATTATTACATTC
TGCCTGAACAGTTTTCTCCGAAAGTAGTCGATGCAATCTTTGAGAAAAGT
TTTCTGCATGATTTTCTGTATTAAATCTTTCCCGAAAAACAGTTATCTCC
GTTGATGTTTCGTTTTGGAAAACGATCGCATTTCAAGTATTTTGGCAATT
GAAAACCAAACTCTTCCATCAGCTGACTGCAACCATTTGTAGCGTCCTTA
CAATACTCTCGACAAGGTGGCAAAACTTTGTTCAGTTCACATTTTGGGAA
ATAATATGAACAAATGAAATTTTGCATTTGATCTGAGCAGCCTGCTTTGA
ACAGAGGTTCATAAAGTTGAACTTCAAGAATTGAATTTTTGACATAGCTG
ATTGATGACTTTTCAATGGAAGTATATTTGTAGGGTAGTTTATTGCAAAC
ATTTGATGATTTCCTTATGAGTTCTTGACATTGATTTGGTTTGGTTGCCA
TTTCCGATGTCTTTGGTTTTAGGGAAGTTGAAAAAATCGGTAAGTTTGTT
GTTATTCGAGTCATTTTTGTTGTCATTTGAGTTGCTTTTGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006375XLOC_006375Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011372-exon-sc0000127-1575043694:22517..22561TCONS_00011372-exon-sc0000127-1575043694:22517..22561Clytia hemisphaericaexon
TCONS_00011372-exon-sc0000127-1575043694:21670..22298TCONS_00011372-exon-sc0000127-1575043694:21670..22298Clytia hemisphaericaexon
TCONS_00011372-exon-sc0000127-1510915933:22517..22561TCONS_00011372-exon-sc0000127-1510915933:22517..22561Clytia hemisphaericaexon
TCONS_00011372-exon-sc0000127-1510915933:21670..22298TCONS_00011372-exon-sc0000127-1510915933:21670..22298Clytia hemisphaericaexon
TCONS_00011372-exon-sc0000127-1491911889:22517..22561TCONS_00011372-exon-sc0000127-1491911889:22517..22561Clytia hemisphaericaexon
TCONS_00011372-exon-sc0000127-1491911889:21670..22298TCONS_00011372-exon-sc0000127-1491911889:21670..22298Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000127supercontigsc0000127:21670..22561 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.161462	0	0	0.186947	0.00317675	0	0	0	0	2.37755	6.82264	7.0551	0.0354734	0.209459	0.371798	0.226732	0	0.357847	1.88351	2.58206	3.13421	3.58012	1.28909	1.27608	0	0	0.328923	0.686172	2.8891	3.27944
Blast
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BLAST of TCONS_00011372 vs. Swiss-Prot (Human)
Match: FZD1 (Frizzled-1 OS=Homo sapiens GN=FZD1 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.369e-16
Identity = 36/81 (44.44%), Postives = 49/81 (60.49%), Query Frame = -2 
Query:  233 KNSILEVQLYEPLFKAGCSDQMQNFICSYYFPKCE-LNKVLPPCREYCKDATNGCSQLMEEFGFQLPKYLKCDRFPKRNIN 472
            +++ LEV  + PL K  CS +++ F+CS Y P C  L + LPPCR  C+ A  GC  LM +FGFQ P  LKC++FP     
Sbjct:  144 EDAGLEVHQFYPLVKVQCSAELKFFLCSMYAPVCTVLEQALPPCRSLCERARQGCEALMNKFGFQWPDTLKCEKFPVHGAG 224
The following BLAST results are available for this feature:
BLAST of TCONS_00011372 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FZD11.369e-1644.44Frizzled-1 OS=Homo sapiens GN=FZD1 PE=1 SV=2[more]
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