TCONS_00011371 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011371
Unique NameTCONS_00011371
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length980

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011371 ID=TCONS_00011371|Name=TCONS_00011371|organism=Clytia hemisphaerica|type=transcript|length=980bp
TAATTATGTTATCCTGATCAAGAATCTGTCTATTTTTTGATGATTGACAC
ATAGATGGGTGTAGCTCAGAATCGACCAAGAAGAATAAGGGAAAAAAGAA
TTAGGAACAAGGTAATCCACTTTaattcttctcttttttttcaaatacag
ATGAACAAATGAACAATTGGTTAGTgtaatttaacaaaattaagAAATGT
TGCCTTGTGAGAAAGCTGATAACCCCCCATGATAAAGCTCTCATATTATT
TAATTAGTATTCTAATTTTGTTTCTATTCATACAGCGTCGATCGGTTTGT
AAGTATCTctcgttttttttgttttttagataTCAATCCTTTAAGGCAAT
GTTTTTAAGGTATGATTATCCACATAAATTTTCTCAACGTTTTCATGAAG
GTTTATTATTACATTCTGCCTGAACAGTTTTCTCCGAAAGTAGTCGATGC
AATCTTTGAGAAAAGTTTTCTGCATGATTTTCTGTATTAAATCTTTCCCG
AAAAACAGTTATCTCCGTTGATGTTTCGTTTTGGAAAACGATCGCATTTC
AAGTATTTTGGCAATTGAAAACCAAACTCTTCCATCAGCTGACTGCAACC
ATTTGTAGCGTCCTTACAATACTCTCGACAAGGTGGCAAAACTTTGTTCA
GTTCACATTTTGGGAAATAATATGaacaaatgaaattttgcatttgATCT
GAGCAGCCTGTTTTGAACAGAGGTTCATAAAGTTGAACTTCAAGAAAACT
TTTGGCGTAATAAGGTGACTTTCCAATGGAAGTATATTTGTAGGGCAGtt
tattgcaaaaatttgaTGATTCATGAGTCCTTATGAGTTCTTGACATTGA
TTTGGTTTGGATGCCATTTCTGATGTCTTTGGTTTTTGGGAGGCTGAAGA
ATTCGGTAATTTTGTTGTCATCTGAGTCCTTTTTGTTGTCTTTTGAGttg
ctttttgtttgtttgttcttGGTTCTTCAC
Run BLAST on NCBI

transcript from alignment at sc0000127:20591..22627-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011371 ID=TCONS_00011371|Name=TCONS_00011371|organism=Clytia hemisphaerica|type=transcript|length=2037bp|location=Sequence derived from alignment at sc0000127:20591..22627- (Clytia hemisphaerica)
TAATTATGTTATCCTGATCAAGAATCTGTCTATTTTTTGATGATTGACAC
ATAGATGGGTGTAGCTCAGAATCGACCAAGAAGAATAAGGGAAAAAAGAA
TTAGGAACAAGGTAATCCACTTTAATTCTTCTCTTTTTTTTCAAATACAG
ATGAACAAATGAACAATTGGTTAGTGTAATTTAACAAAATTAAGAAATGT
TGCCTTGTGAGAAAGCTGATAACCCCCCATGATAAAGCTCTCATATTATT
TAATTAGTATTCTAATTTTGTTTCTATTCATACAGCGTCGATCGGTTTGT
AAGTATCTCTCGTTTTTTTTGTTTTTTAGATATCAATCCTTTAAGGCAAT
GTTTTTAAGGTATGATTATCCACATAAATTTTCTCAACGTTTTCATGAAG
GTTTATTATTACATTCTGCCTGAACAGTTTTCTCCGAAAGTAGTCGATGC
AATCTTTGAGAAAAGTTTTCTGCATGATTTTCTGTATTAAATCTTTCCCG
AAAAACAGTTATCTCCGTTGATGTTTCGTTTTGGAAAACGATCGCATTTC
AAGTATTTTGGCAATTGAAAACCAAACTCTTCCATCAGCTGACTGCAACC
ATTTGTAGCGTCCTTACAATACTCTCGACAAGGTGGCAAAACTTTGTTCA
GTTCACATTTTGGGAAATAATATGAACAAATGAAATTTTGCATTTGATCT
GAGCAGCCTGCTTTGAACAGAGGTTCATAAAGTTGAACTTCAAGAATTGA
ATTTTTGACATAGCTGATTGATGACTTTTCAATGGAAGTATATTTGTAGG
GTAGTTTATTGCAAACATTTGATGATTTCCTTATGAGTTCTTGACATTGA
TTTGGTTTGGTTGCCATTTCCGATGTCTTTGGTTTTAGGGAAGTTGAAAA
AATCGGTAAGTTTGTTGTTATTCGAGTCATTTTTGTTGTCATTTGAGTTG
CTTTTGTTGTCCTTGGTTCTCCACCTAAATCATGAATGAAAATAAAAGAA
ATAAAATGTGTTATATTGAGTTTTTTGAAAGGTGTTCGCCTGCTACTACG
ACGATTTTGATTTTAAGTTTAAGTCTGTTCCAAAAAAAAATAGCAGTCCC
ACATTTTGATAAATTGCCCTTGAAGGATAGAAGGACATAATTAAAAGTAA
TACCATGTTGAAAAGATTTTAATCTTAATCTTCTTAATTTCCATTTTGCT
AATTTTACCCTAACCTACTTTGGAGAGGTGCAACTTTCGCTCCAAGAAAG
ATATGAAAAACCTGAAAACATATTGAAATCAGCGAAGTTCCAAGTTTTCA
GAAAAGTATAAATTCAAAAACTTTCGTTCTGTAGAAAAGATCTTGATTTT
TTTTCATCTTTATTTCCGAAAAAGTTTGAAAGTCTTAAAATCCTCCGCTT
GACTATCTTTTCAACATTTTGATTGTATCTTTTCTTCTTAGAGAGGAATG
TATCAAAATGTGCAAACTGCCAATTTTTTAAGGAACAGACTTTAGGCTGT
AATTTTGTACATTGAGAATTCACAAAATTTACTTTTCAAAATTTATGAAT
TTACCAGCAAAGCAGTTATTTTCATTGATATCTTTTTTCGGGAATCGATC
ACACTTCAATTCTTCTGGCAGCTGAAAACCATACTTTTGCATCAAAAGAC
TGCAACCATTTCTAGAAGTCTCGCAAAGCTCTCGACAAGGTGGCAAAACT
TTGTTCAGTTCACATTTTGGGAAATAATATGAACAAATGAAATTTTGCAT
TTGATCTGAGCAGCCTGTTTTGAACAGAGGTTCATAAAGTTGAACTTCAA
GAAAACTTTTGGCGTAATAAGGTGACTTTCCAATGGAAGTATATTTGTAG
GGCAGTTTATTGCAAAAATTTGATGATTCATGAGTCCTTATGAGTTCTTG
ACATTGATTTGGTTTGGATGCCATTTCTGATGTCTTTGGTTTTTGGGAGG
CTGAAGAATTCGGTAATTTTGTTGTCATCTGAGTCCTTTTTGTTGTCTTT
TGAGTTGCTTTTTGTTTGTTTGTTCTTGGTTCTTCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006375XLOC_006375Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011371-exon-sc0000127-1575043694:21996..22627TCONS_00011371-exon-sc0000127-1575043694:21996..22627Clytia hemisphaericaexon
TCONS_00011371-exon-sc0000127-1575043694:20591..20938TCONS_00011371-exon-sc0000127-1575043694:20591..20938Clytia hemisphaericaexon
TCONS_00011371-exon-sc0000127-1510915933:21996..22627TCONS_00011371-exon-sc0000127-1510915933:21996..22627Clytia hemisphaericaexon
TCONS_00011371-exon-sc0000127-1510915933:20591..20938TCONS_00011371-exon-sc0000127-1510915933:20591..20938Clytia hemisphaericaexon
TCONS_00011371-exon-sc0000127-1491911889:21996..22627TCONS_00011371-exon-sc0000127-1491911889:21996..22627Clytia hemisphaericaexon
TCONS_00011371-exon-sc0000127-1491911889:20591..20938TCONS_00011371-exon-sc0000127-1491911889:20591..20938Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000127supercontigsc0000127:20591..22627 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0127619	0.000151622	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.430243	0	0	0	0	0	0.105222
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011371 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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