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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011370 ID=TCONS_00011370|Name=TCONS_00011370|organism=Clytia hemisphaerica|type=transcript|length=843bp
caaaattaagAAATGTTGCCTTGTGAGAAAGCTGATAACCCCCCATGATA
AAGCTCTCATATTATTTAATTAGTATTCTAATTTTGTTTCTATTCATACA
GCGTCGATCGGTTTGTAAGTATCTctcgttttttttgttttttagataTC
AATCCTTTAAGGCAATGTTTTTAAGGATAATGATGACAATTGAGTTTCTC
CGGCCAGCTGAATCCAAATCTCGCTACTGTATCTTTGCAACCGTTTCTGG
CAGCCTCACAAACCTTTCGGCATGGAGGAAAGTGCCTACATCGGAGGTGG
CGTGGCCATTGGAATCCAAATTTGTTCATTAACTCTTTACAACCCTTTCT
AGCTTCCTTACAAAGGCTTCGGCACGGAGGTAAGGGTTTATTTGCTTCAC
ACTTTGGCAAATAAtaggaacaaatgaaatcttGAATATGCTCGGAACAT
TCGACCTTGAACAGTGGTTCGAATTGGTTTCCTACCAGATTTGCTTCCTC
TATCTCAGATTTGGTCTTCATAATTGTGTAGTTGTAGGGTCGATTTCTAC
AAAATCCtttcattattattttattgTCAGCGATAGACatacattttgat
ttttctgctgTTTGTGATGCTGTTGTTTTCATGTTCGACTGTCGTACCGG
CTCTTGTTTTACCGTGGTAGGAAATGATTTAGGTGTTGTCGTCGTAGGAA
TACTTGATCTTTCGGGAGCTGGTGCTACCGTGGCTAGAAAGAAGTGAGAA
TTACGTTTGagaattaaattattttaactGGCTTAGCTTGACCACAATCT
ATAGTCTAATTCTTTTCCCTAGAGTATTTAGTGTTGATGTTTG Run BLAST on NCBI transcript from alignment at sc0000127:18849..22443- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011370 ID=TCONS_00011370|Name=TCONS_00011370|organism=Clytia hemisphaerica|type=transcript|length=3595bp|location=Sequence derived from alignment at sc0000127:18849..22443- (Clytia hemisphaerica)
CAAAATTAAGAAATGTTGCCTTGTGAGAAAGCTGATAACCCCCCATGATA
AAGCTCTCATATTATTTAATTAGTATTCTAATTTTGTTTCTATTCATACA
GCGTCGATCGGTTTGTAAGTATCTCTCGTTTTTTTTGTTTTTTAGATATC
AATCCTTTAAGGCAATGTTTTTAAGGTATGATTATCCACATAAATTTTCT
CAACGTTTTCATGAAGGTTTATTATTACATTCTGCCTGAACAGTTTTCTC
CGAAAGTAGTCGATGCAATCTTTGAGAAAAGTTTTCTGCATGATTTTCTG
TATTAAATCTTTCCCGAAAAACAGTTATCTCCGTTGATGTTTCGTTTTGG
AAAACGATCGCATTTCAAGTATTTTGGCAATTGAAAACCAAACTCTTCCA
TCAGCTGACTGCAACCATTTGTAGCGTCCTTACAATACTCTCGACAAGGT
GGCAAAACTTTGTTCAGTTCACATTTTGGGAAATAATATGAACAAATGAA
ATTTTGCATTTGATCTGAGCAGCCTGCTTTGAACAGAGGTTCATAAAGTT
GAACTTCAAGAATTGAATTTTTGACATAGCTGATTGATGACTTTTCAATG
GAAGTATATTTGTAGGGTAGTTTATTGCAAACATTTGATGATTTCCTTAT
GAGTTCTTGACATTGATTTGGTTTGGTTGCCATTTCCGATGTCTTTGGTT
TTAGGGAAGTTGAAAAAATCGGTAAGTTTGTTGTTATTCGAGTCATTTTT
GTTGTCATTTGAGTTGCTTTTGTTGTCCTTGGTTCTCCACCTAAATCATG
AATGAAAATAAAAGAAATAAAATGTGTTATATTGAGTTTTTTGAAAGGTG
TTCGCCTGCTACTACGACGATTTTGATTTTAAGTTTAAGTCTGTTCCAAA
AAAAAATAGCAGTCCCACATTTTGATAAATTGCCCTTGAAGGATAGAAGG
ACATAATTAAAAGTAATACCATGTTGAAAAGATTTTAATCTTAATCTTCT
TAATTTCCATTTTGCTAATTTTACCCTAACCTACTTTGGAGAGGTGCAAC
TTTCGCTCCAAGAAAGATATGAAAAACCTGAAAACATATTGAAATCAGCG
AAGTTCCAAGTTTTCAGAAAAGTATAAATTCAAAAACTTTCGTTCTGTAG
AAAAGATCTTGATTTTTTTTCATCTTTATTTCCGAAAAAGTTTGAAAGTC
TTAAAATCCTCCGCTTGACTATCTTTTCAACATTTTGATTGTATCTTTTC
TTCTTAGAGAGGAATGTATCAAAATGTGCAAACTGCCAATTTTTTAAGGA
ACAGACTTTAGGCTGTAATTTTGTACATTGAGAATTCACAAAATTTACTT
TTCAAAATTTATGAATTTACCAGCAAAGCAGTTATTTTCATTGATATCTT
TTTTCGGGAATCGATCACACTTCAATTCTTCTGGCAGCTGAAAACCATAC
TTTTGCATCAAAAGACTGCAACCATTTCTAGAAGTCTCGCAAAGCTCTCG
ACAAGGTGGCAAAACTTTGTTCAGTTCACATTTTGGGAAATAATATGAAC
AAATGAAATTTTGCATTTGATCTGAGCAGCCTGTTTTGAACAGAGGTTCA
TAAAGTTGAACTTCAAGAAAACTTTTGGCGTAATAAGGTGACTTTCCAAT
GGAAGTATATTTGTAGGGCAGTTTATTGCAAAAATTTGATGATTCATGAG
TCCTTATGAGTTCTTGACATTGATTTGGTTTGGATGCCATTTCTGATGTC
TTTGGTTTTTGGGAGGCTGAAGAATTCGGTAATTTTGTTGTCATCTGAGT
CCTTTTTGTTGTCTTTTGAGTTGCTTTTTGTTTGTTTGTTCTTGGTTCTT
CACCTGAATTTTGCAATGAAAAAAATTGAAAAAAAAATTCTAAGAAATCA
CCGTTGCTAAGAAGAATAACTTTTTTACGACCTCATGACGTCTAAAACCG
TCCGAAATATTTATCTGGGTTAACCCTTTGCGTTACAAGTTTTGTATAGT
GTGGAAGCGCTTTAAAGATTATATTTTTAACTTTATTGTAGATTAAATCT
TATAACTTACCTAAGATTCGAGAAGAAAACTTATGAATGAAAAAAAGAAA
AAGAAATGTACGGTCTTCTTTGTAGTGCTCTTATATAAAACCCTTTTTAT
TTGCATTCCTTTAAAACTCAAACTTACCGGAAAAGCAGTTATTTTCATTG
ATAACTTTTTTCGGGAATCGATCACACTTCAATTGATCTGGCCACTGAAA
ACCATACTTTTGCATCAACAGACTACAACCATTTCTAGAAGCTTCACAAA
GCTCTCGACAAGGTGGCAAAACTTTGTTCAGTTCACATTTTGGGAAATGA
TAAGAACAAATAAAGTTTTGTAAATGATCAGAGCATCTGACTGCATATAA
TGGGTTGAACATTTCAATCATCCTCTTTGCACCACTTATCGCCTTTAACT
TATCGATTGACGTATAGCTGTACGGGAGCTGCTGGCAAATCCTTTTATTT
CTCAAAACTTCTCTAACTAAGTTGCATGTTTTGTTTGGTTTTATTATCGA
GGGGCGAATCTTTTGTATTTCTTCCCCATCAGTCATGAAACAGTTATCTT
TATTTTCATTTTGTACAGGATAATGATGACAATTGAGTTTCTCCGGCCAG
CTGAATCCAAATCTCGCTACTGTATCTTTGCAACCGTTTCTGGCAGCCTC
ACAAACCTTTCGGCATGGAGGTAAAACAAGTCCGGATTCACATTTCGGGT
AATGCACCGAACACACAAATAACTCAAGATGTTTTGAACATCTTTGAAAG
AAAGGGATGTACCGTACCACTTTACTTCCAACGGAATTAAGTGTAGTCTT
TTTCATCTTTAATGTCCTGTCATATGGTAGAACTTTACAGTATTTCCCCT
TAAAAGGTACAGGCTGCTTCTCAAATGCTATACATTCACCTTTAACTGGT
AGCTTTGGTGTTAAGGTAGGCTTTGGAGGTACTTTTTTCTTAACCATAAA
GCAATTGTTTCCTTCTTGATTTCTCTTAGGAAAGTGCCTACATCGGAGGT
GGCGTGGCCATTGGAATCCAAATTTGTTCATTAACTCTTTACAACCCTTT
CTAGCTTCCTTACAAAGGCTTCGGCACGGAGGTAAGGGTTTATTTGCTTC
ACACTTTGGCAAATAATAGGAACAAATGAAATCTTGAATATGCTCGGAAC
ATTCGACCTTGAACAGTGGTTCGAATTGGTTTCCTACCAGATTTGCTTCC
TCTATCTCAGATTTGGTCTTCATAATTGTGTAGTTGTAGGGTCGATTTCT
ACAAAATCCTTTCATTATTATTTTATTGTCAGCGATAGACATACATTTTG
ATTTTTCTGCTGTTTGTGATGCTGTTGTTTTCATGTTCGACTGTCGTACC
GGCTCTTGTTTTACCGTGGTAGGAAATGATTTAGGTGTTGTCGTCGTAGG
AATACTTGATCTTTCGGGAGCTGGTGCTACCGTGGCTAGAAAGAAGTGAG
AATTACGTTTGAGAATTAAATTATTTTAACTGGCTTAGCTTGACCACAAT
CTATAGTCTAATTCTTTTCCCTAGAGTATTTAGTGTTGATGTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011370-exon-sc0000127-1575043694:22269..22443 | TCONS_00011370-exon-sc0000127-1575043694:22269..22443 | Clytia hemisphaerica | exon |
| TCONS_00011370-exon-sc0000127-1575043694:19724..19825 | TCONS_00011370-exon-sc0000127-1575043694:19724..19825 | Clytia hemisphaerica | exon |
| TCONS_00011370-exon-sc0000127-1575043694:18849..19414 | TCONS_00011370-exon-sc0000127-1575043694:18849..19414 | Clytia hemisphaerica | exon |
| TCONS_00011370-exon-sc0000127-1510915933:22269..22443 | TCONS_00011370-exon-sc0000127-1510915933:22269..22443 | Clytia hemisphaerica | exon |
| TCONS_00011370-exon-sc0000127-1510915933:19724..19825 | TCONS_00011370-exon-sc0000127-1510915933:19724..19825 | Clytia hemisphaerica | exon |
| TCONS_00011370-exon-sc0000127-1510915933:18849..19414 | TCONS_00011370-exon-sc0000127-1510915933:18849..19414 | Clytia hemisphaerica | exon |
| TCONS_00011370-exon-sc0000127-1491911889:22269..22443 | TCONS_00011370-exon-sc0000127-1491911889:22269..22443 | Clytia hemisphaerica | exon |
| TCONS_00011370-exon-sc0000127-1491911889:19724..19825 | TCONS_00011370-exon-sc0000127-1491911889:19724..19825 | Clytia hemisphaerica | exon |
| TCONS_00011370-exon-sc0000127-1491911889:18849..19414 | TCONS_00011370-exon-sc0000127-1491911889:18849..19414 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000127 | supercontig | sc0000127:18849..22443 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR020067 | Frizzled_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
BLAST of TCONS_00011370 vs. Swiss-Prot (Human)
Match: FZD2 (Frizzled-2 OS=Homo sapiens GN=FZD2 PE=1 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.684e-24 Identity = 54/114 (47.37%), Postives = 70/114 (61.40%), Query Frame = -2
Query: 276 KCMSIADNKI---IMKGFCRNRPYNYTIMKT---KSEIEEANLVGNQFEPLFKVECSEHIQDFICSYYLPKCEA-NKPLPPCRSLCKEARKGCKELMNKFGFQWPRHLRCRHFP 596
K +SI D+ I C + YN TIM + E+A L +QF PL KV+CS ++ F+CS Y P C + +PPCRS+C+ AR+GC+ LMNKFGFQWP LRC HFP
Sbjct: 29 KGISIPDHGFCQPISIPLCTDIAYNQTIMPNLLGHTNQEDAGLEVHQFYPLVKVQCSPELRFFLCSMYAPVCTVLEQAIPPCRSICERARQGCEALMNKFGFQWPERLRCEHFP 142
The following BLAST results are available for this feature:
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