TCONS_00011369 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011369
Unique NameTCONS_00011369
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1002

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011369 ID=TCONS_00011369|Name=TCONS_00011369|organism=Clytia hemisphaerica|type=transcript|length=1002bp
AATCCTTTAAGGCAATGTTTTTAAGGATAATGATGACAATTGAGTTTCTC
CGGCCAGCTGAATCCAAATCTCGCTACTGTATCTTTGCAACCGTTTCTGG
CAGCCTCACAAACCTTTCGGCATGGAGGTAAAACAAGTCCGGATTCACAT
TTCGGGTAATGCACCGAACACACAAATAACTCAAGATGTTTTGAACATCT
TTGAAAGAAAGGGATGTACCGTACCACTTTACTTCCAACGGAATTAAGTG
TAGTCTTTTTCATCTTTAATGTCCTGTCATATGGTAGAACTTTACAGTAT
TTCCCCTTAAAAGGTACAGGCTGCTTCTCAAATGCTATACATTCACCTTT
AACTGGTAGCTTTGGTGTTAAGGTAGGCTTTGGAGGTACTTTTTTCTTAA
CCATAAAGCAATTGTTTCCTTCTTGATTTCTCTTAGGAAAGTGCCTACAT
CGGAGGTGGCGTGGCCATTGGAATCCAAATTTGTTCATTAACTCTTTACA
ACCCTTTCTAGCTTCCTTACAAAGGCTTCGGCACGGAGGTAAGGGTTTAT
TTGCTTCACACTTTGGCAAATAAtaggaacaaatgaaatcttGAATATGC
TCGGAACATTCGACCTTGAACAGTGGTTCGAATTGGTTTCCTACCAGATT
TGCTTCCTCTATCTCAGATTTGGTCTTCATAATTGTGTAGTTGTAGGGTC
GATTTCTACAAAATCCtttcattattattttattgTCAGCGATAGACata
cattttgatttttctgctgTTTGTGATGCTGTTGTTTTCATGTTCGACTG
TCGTACCGGCTCTTGTTTTACCGTGGTAGGAAATGATTTAGGTGTTGTCG
TCGTAGGAATACTTGATCTTTCGGGAGCTGGTGCTACCGTGGCTAGAAAG
AAGTGAGAATTACGTTTGagaattaaattattttaactGGCTTAGCTTGA
CCACAATCTATAGTCTAATTCTTTTCCCTAGAGTATTTAGTGTTGATGTT
TG
Run BLAST on NCBI

transcript from alignment at sc0000127:18849..22293-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011369 ID=TCONS_00011369|Name=TCONS_00011369|organism=Clytia hemisphaerica|type=transcript|length=3445bp|location=Sequence derived from alignment at sc0000127:18849..22293- (Clytia hemisphaerica)
AATCCTTTAAGGCAATGTTTTTAAGGTATGATTATCCACATAAATTTTCT
CAACGTTTTCATGAAGGTTTATTATTACATTCTGCCTGAACAGTTTTCTC
CGAAAGTAGTCGATGCAATCTTTGAGAAAAGTTTTCTGCATGATTTTCTG
TATTAAATCTTTCCCGAAAAACAGTTATCTCCGTTGATGTTTCGTTTTGG
AAAACGATCGCATTTCAAGTATTTTGGCAATTGAAAACCAAACTCTTCCA
TCAGCTGACTGCAACCATTTGTAGCGTCCTTACAATACTCTCGACAAGGT
GGCAAAACTTTGTTCAGTTCACATTTTGGGAAATAATATGAACAAATGAA
ATTTTGCATTTGATCTGAGCAGCCTGCTTTGAACAGAGGTTCATAAAGTT
GAACTTCAAGAATTGAATTTTTGACATAGCTGATTGATGACTTTTCAATG
GAAGTATATTTGTAGGGTAGTTTATTGCAAACATTTGATGATTTCCTTAT
GAGTTCTTGACATTGATTTGGTTTGGTTGCCATTTCCGATGTCTTTGGTT
TTAGGGAAGTTGAAAAAATCGGTAAGTTTGTTGTTATTCGAGTCATTTTT
GTTGTCATTTGAGTTGCTTTTGTTGTCCTTGGTTCTCCACCTAAATCATG
AATGAAAATAAAAGAAATAAAATGTGTTATATTGAGTTTTTTGAAAGGTG
TTCGCCTGCTACTACGACGATTTTGATTTTAAGTTTAAGTCTGTTCCAAA
AAAAAATAGCAGTCCCACATTTTGATAAATTGCCCTTGAAGGATAGAAGG
ACATAATTAAAAGTAATACCATGTTGAAAAGATTTTAATCTTAATCTTCT
TAATTTCCATTTTGCTAATTTTACCCTAACCTACTTTGGAGAGGTGCAAC
TTTCGCTCCAAGAAAGATATGAAAAACCTGAAAACATATTGAAATCAGCG
AAGTTCCAAGTTTTCAGAAAAGTATAAATTCAAAAACTTTCGTTCTGTAG
AAAAGATCTTGATTTTTTTTCATCTTTATTTCCGAAAAAGTTTGAAAGTC
TTAAAATCCTCCGCTTGACTATCTTTTCAACATTTTGATTGTATCTTTTC
TTCTTAGAGAGGAATGTATCAAAATGTGCAAACTGCCAATTTTTTAAGGA
ACAGACTTTAGGCTGTAATTTTGTACATTGAGAATTCACAAAATTTACTT
TTCAAAATTTATGAATTTACCAGCAAAGCAGTTATTTTCATTGATATCTT
TTTTCGGGAATCGATCACACTTCAATTCTTCTGGCAGCTGAAAACCATAC
TTTTGCATCAAAAGACTGCAACCATTTCTAGAAGTCTCGCAAAGCTCTCG
ACAAGGTGGCAAAACTTTGTTCAGTTCACATTTTGGGAAATAATATGAAC
AAATGAAATTTTGCATTTGATCTGAGCAGCCTGTTTTGAACAGAGGTTCA
TAAAGTTGAACTTCAAGAAAACTTTTGGCGTAATAAGGTGACTTTCCAAT
GGAAGTATATTTGTAGGGCAGTTTATTGCAAAAATTTGATGATTCATGAG
TCCTTATGAGTTCTTGACATTGATTTGGTTTGGATGCCATTTCTGATGTC
TTTGGTTTTTGGGAGGCTGAAGAATTCGGTAATTTTGTTGTCATCTGAGT
CCTTTTTGTTGTCTTTTGAGTTGCTTTTTGTTTGTTTGTTCTTGGTTCTT
CACCTGAATTTTGCAATGAAAAAAATTGAAAAAAAAATTCTAAGAAATCA
CCGTTGCTAAGAAGAATAACTTTTTTACGACCTCATGACGTCTAAAACCG
TCCGAAATATTTATCTGGGTTAACCCTTTGCGTTACAAGTTTTGTATAGT
GTGGAAGCGCTTTAAAGATTATATTTTTAACTTTATTGTAGATTAAATCT
TATAACTTACCTAAGATTCGAGAAGAAAACTTATGAATGAAAAAAAGAAA
AAGAAATGTACGGTCTTCTTTGTAGTGCTCTTATATAAAACCCTTTTTAT
TTGCATTCCTTTAAAACTCAAACTTACCGGAAAAGCAGTTATTTTCATTG
ATAACTTTTTTCGGGAATCGATCACACTTCAATTGATCTGGCCACTGAAA
ACCATACTTTTGCATCAACAGACTACAACCATTTCTAGAAGCTTCACAAA
GCTCTCGACAAGGTGGCAAAACTTTGTTCAGTTCACATTTTGGGAAATGA
TAAGAACAAATAAAGTTTTGTAAATGATCAGAGCATCTGACTGCATATAA
TGGGTTGAACATTTCAATCATCCTCTTTGCACCACTTATCGCCTTTAACT
TATCGATTGACGTATAGCTGTACGGGAGCTGCTGGCAAATCCTTTTATTT
CTCAAAACTTCTCTAACTAAGTTGCATGTTTTGTTTGGTTTTATTATCGA
GGGGCGAATCTTTTGTATTTCTTCCCCATCAGTCATGAAACAGTTATCTT
TATTTTCATTTTGTACAGGATAATGATGACAATTGAGTTTCTCCGGCCAG
CTGAATCCAAATCTCGCTACTGTATCTTTGCAACCGTTTCTGGCAGCCTC
ACAAACCTTTCGGCATGGAGGTAAAACAAGTCCGGATTCACATTTCGGGT
AATGCACCGAACACACAAATAACTCAAGATGTTTTGAACATCTTTGAAAG
AAAGGGATGTACCGTACCACTTTACTTCCAACGGAATTAAGTGTAGTCTT
TTTCATCTTTAATGTCCTGTCATATGGTAGAACTTTACAGTATTTCCCCT
TAAAAGGTACAGGCTGCTTCTCAAATGCTATACATTCACCTTTAACTGGT
AGCTTTGGTGTTAAGGTAGGCTTTGGAGGTACTTTTTTCTTAACCATAAA
GCAATTGTTTCCTTCTTGATTTCTCTTAGGAAAGTGCCTACATCGGAGGT
GGCGTGGCCATTGGAATCCAAATTTGTTCATTAACTCTTTACAACCCTTT
CTAGCTTCCTTACAAAGGCTTCGGCACGGAGGTAAGGGTTTATTTGCTTC
ACACTTTGGCAAATAATAGGAACAAATGAAATCTTGAATATGCTCGGAAC
ATTCGACCTTGAACAGTGGTTCGAATTGGTTTCCTACCAGATTTGCTTCC
TCTATCTCAGATTTGGTCTTCATAATTGTGTAGTTGTAGGGTCGATTTCT
ACAAAATCCTTTCATTATTATTTTATTGTCAGCGATAGACATACATTTTG
ATTTTTCTGCTGTTTGTGATGCTGTTGTTTTCATGTTCGACTGTCGTACC
GGCTCTTGTTTTACCGTGGTAGGAAATGATTTAGGTGTTGTCGTCGTAGG
AATACTTGATCTTTCGGGAGCTGGTGCTACCGTGGCTAGAAAGAAGTGAG
AATTACGTTTGAGAATTAAATTATTTTAACTGGCTTAGCTTGACCACAAT
CTATAGTCTAATTCTTTTCCCTAGAGTATTTAGTGTTGATGTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006375XLOC_006375Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011369-exon-sc0000127-1575043694:22269..22293TCONS_00011369-exon-sc0000127-1575043694:22269..22293Clytia hemisphaericaexon
TCONS_00011369-exon-sc0000127-1575043694:18849..19825TCONS_00011369-exon-sc0000127-1575043694:18849..19825Clytia hemisphaericaexon
TCONS_00011369-exon-sc0000127-1510915933:22269..22293TCONS_00011369-exon-sc0000127-1510915933:22269..22293Clytia hemisphaericaexon
TCONS_00011369-exon-sc0000127-1510915933:18849..19825TCONS_00011369-exon-sc0000127-1510915933:18849..19825Clytia hemisphaericaexon
TCONS_00011369-exon-sc0000127-1491911889:22269..22293TCONS_00011369-exon-sc0000127-1491911889:22269..22293Clytia hemisphaericaexon
TCONS_00011369-exon-sc0000127-1491911889:18849..19825TCONS_00011369-exon-sc0000127-1491911889:18849..19825Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000127supercontigsc0000127:18849..22293 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	2.21201	2.68096	1.7131	3.10082	0	0	0	2.684	0.15957	0.909183	0.41464	0.332527	1.28451	0.195527	0	0	0	0	0	0	1.1369	1.62029	0	0.256345	0	0
Blast
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BLAST of TCONS_00011369 vs. Swiss-Prot (Human)
Match: FZD2 (Frizzled-2 OS=Homo sapiens GN=FZD2 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.691e-25
Identity = 55/119 (46.22%), Postives = 72/119 (60.50%), Query Frame = -2 
Query:  420 KCMSIADNKI---IMKGFCRNRPYNYTIMKT---KSEIEEANLVGNQFEPLFKVECSEHIQDFICSYYLPKCEA-NKPLPPCRSLCKEARKGCKELMNKFGFQWPRHLRCRHFPKRNQE 755
            K +SI D+     I    C +  YN TIM      +  E+A L  +QF PL KV+CS  ++ F+CS Y P C    + +PPCRS+C+ AR+GC+ LMNKFGFQWP  LRC HFP+   E
Sbjct:   29 KGISIPDHGFCQPISIPLCTDIAYNQTIMPNLLGHTNQEDAGLEVHQFYPLVKVQCSPELRFFLCSMYAPVCTVLEQAIPPCRSICERARQGCEALMNKFGFQWPERLRCEHFPRHGAE 147
The following BLAST results are available for this feature:
BLAST of TCONS_00011369 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FZD22.691e-2546.22Frizzled-2 OS=Homo sapiens GN=FZD2 PE=1 SV=1[more]
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