TCONS_00011367 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011367
Unique NameTCONS_00011367
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1047

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011367 ID=TCONS_00011367|Name=TCONS_00011367|organism=Clytia hemisphaerica|type=transcript|length=1047bp
GGCCACTGAAAACCATACTTTTGCATCAACAGACTACAACCATTTCTAGA
AGCTTCACAAAGCTCTCGACAAGGTGGCAAAACTTTGTTCAGTTCACATT
TTGGGAAATGATAAGAACAAATAAAGTTTTGTAAATGATCAGAGCATCTG
ACTGCATATAATGGGTTGAACATTTCAATCATCCTCTTTGCACCACTTAT
CGCCTTTAACTTATCGATTGACGTATAGCTGTACGGGAGCTGCTGGCAAA
TCCTTTTATTTCTCAAAACTTCTCTAACTAAGTTGCAtgttttgtttggt
tttattaTCGAGGGGCGAATCTTTTGTATTTCTTCCCCATCAGTCATGAA
ACAgttatctttattttcattttgtacaGGATAATGATGACAATTGAGTT
TCTCCGGCCAGCTGAATCCAAATCTCGCTACTGTATCTTTGCAACCGTTT
CTGGCAGCCTCACAAACCTTTCGGCATGGAGGAAAGTGCCTACATCGGAG
GTGGCGTGGCCATTGGAATCCAAATTTGTTCATTAACTCTTTACAACCCT
TTCTAGCTTCCTTACAAAGGCTTCGGCACGGAGGTAAGGGTTTATTTGCT
TCACACTTTGGCAAATAAtaggaacaaatgaaatcttGAATATGCTCGGA
ACATTCGACCTTGAACAGTGGTTCGAATTGGTTTCCTACCAGATTTGCTT
CCTCTATCTCAGATTTGGTCTTCATAATTGTGTAGTTGTAGGGTCGATTT
CTACAAAATCCtttcattattattttattgTCAGCGATAGACatacattt
tgatttttctgctgTTTGTGATGCTGTTGTTTTCATGTTCGACTGTCGTA
CCGGCTCTTGTTTTACCGTGGTAGGAAATGATTTAGGTGTTGTCGTCGTA
GGAATACTTGATCTTTCGGGAGCTGGTGCTACCGTGGCTAGAAAGAAGTG
AGAATTACGTTTGagaattaaattattttaactGGCTTAGCTTGACCACA
ATCTATAGTCTAATTCTTTTCCCTAGAGTATTTAGTGTTGATGTTTG
Run BLAST on NCBI

transcript from alignment at sc0000127:18849..20204-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011367 ID=TCONS_00011367|Name=TCONS_00011367|organism=Clytia hemisphaerica|type=transcript|length=1356bp|location=Sequence derived from alignment at sc0000127:18849..20204- (Clytia hemisphaerica)
GGCCACTGAAAACCATACTTTTGCATCAACAGACTACAACCATTTCTAGA
AGCTTCACAAAGCTCTCGACAAGGTGGCAAAACTTTGTTCAGTTCACATT
TTGGGAAATGATAAGAACAAATAAAGTTTTGTAAATGATCAGAGCATCTG
ACTGCATATAATGGGTTGAACATTTCAATCATCCTCTTTGCACCACTTAT
CGCCTTTAACTTATCGATTGACGTATAGCTGTACGGGAGCTGCTGGCAAA
TCCTTTTATTTCTCAAAACTTCTCTAACTAAGTTGCATGTTTTGTTTGGT
TTTATTATCGAGGGGCGAATCTTTTGTATTTCTTCCCCATCAGTCATGAA
ACAGTTATCTTTATTTTCATTTTGTACAGGATAATGATGACAATTGAGTT
TCTCCGGCCAGCTGAATCCAAATCTCGCTACTGTATCTTTGCAACCGTTT
CTGGCAGCCTCACAAACCTTTCGGCATGGAGGTAAAACAAGTCCGGATTC
ACATTTCGGGTAATGCACCGAACACACAAATAACTCAAGATGTTTTGAAC
ATCTTTGAAAGAAAGGGATGTACCGTACCACTTTACTTCCAACGGAATTA
AGTGTAGTCTTTTTCATCTTTAATGTCCTGTCATATGGTAGAACTTTACA
GTATTTCCCCTTAAAAGGTACAGGCTGCTTCTCAAATGCTATACATTCAC
CTTTAACTGGTAGCTTTGGTGTTAAGGTAGGCTTTGGAGGTACTTTTTTC
TTAACCATAAAGCAATTGTTTCCTTCTTGATTTCTCTTAGGAAAGTGCCT
ACATCGGAGGTGGCGTGGCCATTGGAATCCAAATTTGTTCATTAACTCTT
TACAACCCTTTCTAGCTTCCTTACAAAGGCTTCGGCACGGAGGTAAGGGT
TTATTTGCTTCACACTTTGGCAAATAATAGGAACAAATGAAATCTTGAAT
ATGCTCGGAACATTCGACCTTGAACAGTGGTTCGAATTGGTTTCCTACCA
GATTTGCTTCCTCTATCTCAGATTTGGTCTTCATAATTGTGTAGTTGTAG
GGTCGATTTCTACAAAATCCTTTCATTATTATTTTATTGTCAGCGATAGA
CATACATTTTGATTTTTCTGCTGTTTGTGATGCTGTTGTTTTCATGTTCG
ACTGTCGTACCGGCTCTTGTTTTACCGTGGTAGGAAATGATTTAGGTGTT
GTCGTCGTAGGAATACTTGATCTTTCGGGAGCTGGTGCTACCGTGGCTAG
AAAGAAGTGAGAATTACGTTTGAGAATTAAATTATTTTAACTGGCTTAGC
TTGACCACAATCTATAGTCTAATTCTTTTCCCTAGAGTATTTAGTGTTGA
TGTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006375XLOC_006375Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011367-exon-sc0000127-1575043694:19724..20204TCONS_00011367-exon-sc0000127-1575043694:19724..20204Clytia hemisphaericaexon
TCONS_00011367-exon-sc0000127-1575043694:18849..19414TCONS_00011367-exon-sc0000127-1575043694:18849..19414Clytia hemisphaericaexon
TCONS_00011367-exon-sc0000127-1510915933:19724..20204TCONS_00011367-exon-sc0000127-1510915933:19724..20204Clytia hemisphaericaexon
TCONS_00011367-exon-sc0000127-1510915933:18849..19414TCONS_00011367-exon-sc0000127-1510915933:18849..19414Clytia hemisphaericaexon
TCONS_00011367-exon-sc0000127-1491911889:19724..20204TCONS_00011367-exon-sc0000127-1491911889:19724..20204Clytia hemisphaericaexon
TCONS_00011367-exon-sc0000127-1491911889:18849..19414TCONS_00011367-exon-sc0000127-1491911889:18849..19414Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000127supercontigsc0000127:18849..20204 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0129707	0	2.49673	0.796696	2.05658	4.98842	3.83852e-09	3.6237	10.8815	4.85254	2.59724	6.5006	6.91162e-07	0	5.2128	0	0.000198339	2.35292	1.7826	0.804741	0	0	3.32849	1.27992	0	0.174422	0.51531	1.19115e-06
Blast
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BLAST of TCONS_00011367 vs. Swiss-Prot (Human)
Match: FZD2 (Frizzled-2 OS=Homo sapiens GN=FZD2 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.329e-24
Identity = 54/114 (47.37%), Postives = 70/114 (61.40%), Query Frame = -2 
Query:  480 KCMSIADNKI---IMKGFCRNRPYNYTIMKT---KSEIEEANLVGNQFEPLFKVECSEHIQDFICSYYLPKCEA-NKPLPPCRSLCKEARKGCKELMNKFGFQWPRHLRCRHFP 800
            K +SI D+     I    C +  YN TIM      +  E+A L  +QF PL KV+CS  ++ F+CS Y P C    + +PPCRS+C+ AR+GC+ LMNKFGFQWP  LRC HFP
Sbjct:   29 KGISIPDHGFCQPISIPLCTDIAYNQTIMPNLLGHTNQEDAGLEVHQFYPLVKVQCSPELRFFLCSMYAPVCTVLEQAIPPCRSICERARQGCEALMNKFGFQWPERLRCEHFP 142
The following BLAST results are available for this feature:
BLAST of TCONS_00011367 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FZD24.329e-2447.37Frizzled-2 OS=Homo sapiens GN=FZD2 PE=1 SV=1[more]
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