TCONS_00011366 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011366
Unique NameTCONS_00011366
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length656

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011366 ID=TCONS_00011366|Name=TCONS_00011366|organism=Clytia hemisphaerica|type=transcript|length=656bp
AACCAAGGCTAAAAAAGCACAAATACATTTTATAACCGTTTTAAATCAAA
CCGTCGACATTCTTCAACTTACTCAAAAAACCTGTTTCATCTTTAAAAAT
CGTACTTGTGTCTGCTACGTTCAGAATTTCGAGgatttcattatttgatt
acATCATTCCGAAATGGCCGCTACAACAGCAGAGGATATCAAGAAAGGCT
TAATCACAGATACAACTTATTACTCGAAGTGTAAGAACGATATTTATGTG
GAAATCGATAAATTGTTATGCGATAAGAATCGATACCAATCGATCAAAGA
TCGAAAAGAAGAAAGTGTTTTTGATATGGAAACTTTCAAGAAGGTCTCTA
AAGggAAATATTGTACAAGATGGCGAGGGTTGAGTATGATGAAAGATTGT
TGTGACATGGTGATCTACCAACAACTTATATGGGAACTACAACCAAAAAC
CATCATCGAAACGGgTGCTTATACTGGCGCATGTGCGTTATGGATGGCAG
ACACAGCAAAAAGTTACGGTATCGAAACACACGTTCATTCCATCGACATC
GAATTAAGTATGGTTGAAGATTTAGCATTGAACGATGAAAATGTCACTAT
TCGACAAGGAGATGCAAAACAGATTGCCAAAGCCTTTCCACCTGAAATGT
TAAAGG
Run BLAST on NCBI

protein sequence of TCONS_00011366-protein

>TCONS_00011366-protein ID=TCONS_00011366-protein|Name=TCONS_00011366-protein|organism=Clytia hemisphaerica|type=polypeptide|length=164bp
MAATTAEDIKKGLITDTTYYSKCKNDIYVEIDKLLCDKNRYQSIKDRKEE
SVFDMETFKKVSKGKYCTRWRGLSMMKDCCDMVIYQQLIWELQPKTIIET
GAYTGACALWMADTAKSYGIETHVHSIDIELSMVEDLALNDENVTIRQGD
AKQIAKAFPPEMLK
Run BLAST on NCBI

transcript from alignment at sc0000127:8199..12316-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011366 ID=TCONS_00011366|Name=TCONS_00011366|organism=Clytia hemisphaerica|type=transcript|length=4118bp|location=Sequence derived from alignment at sc0000127:8199..12316- (Clytia hemisphaerica)
AACCAAGGCTAAAAAAGCACAAATACATTTTATAACCGTTTTAAATCAAA
CCGTCGACATTCTTCAACTTACTCAAAAAACCTGTTTCATCTTTAAAAAT
CGTACTTGTGTCTGCTACGTTCAGAATTTCGAGGATTTCATTATTTGATT
ACATCATTCCGAAATGGCCGCTACAACAGCAGAGGATATCAAGAAAGGCT
TAATCACAGATACAACTTATTACTCGAAGTGTAAGAACGATATTTATGTG
GAAATCGATAAATTGTTATGCGATAAGAATCGATACCAATCGATCAAAGA
TCGAAAAGAAGAAAGTGTTTTTGATATGGAAACTTTCAAGAAGGTCTCTA
AAGGTATGTGATATTTTTCTAATATTATTCTTTAGTTAAGATTTCGACCA
TAGAGCGATGGGTGAACTGTCTAATGGTCTAATGGGGCCCCCCCCCCAGC
GGTTTGCGGGATTGCGTGAATGGGCATTTTCGGTTGCGTGAATGCGTGAA
AATTGAAAAAAAATTGCGTGAATGCGTGAATTGAAAAAACTTGCGTGAAC
GTGAAAATGTACTTTTTGATTGCGTGAATGCGTGAATCTGGGCTATTTTG
TGCGTGAATACGTGTATTTCCCTTTTTTCCACCGATTATGTGCAGTTTTC
CCGATTTTCCAATGTTTCCCCGATTTTTCGCAAGAAAATTTCCGATTTCT
GAAAAATCGGGTTATTGCGTGAAACTTGAGGAAAATTTGCGTGAATGCGT
GAATTTCGAAAAAAAATTGCGTGATTGCGTGAATTGAGGGTCCGCTGGGG
GGGCCTCTCTAATGTTTGCAAACCTTTTTTTTGCACGCAAGTGTGGTCTT
CACACATTTACACATGCAATAAGTGGATTTTCACGCTCACGCATATTTTT
TCGATCCACGCATTCACGCAATGATAAAATGCAATTCACGTATTCACGCA
AACCTCTGGTGCCAGTTTTTTTTCTATAAGCATAACGTTTATAATAATAT
ACAGGCTCATTTTTTGGTACCTTAACAATGGCTCTATTCTTTAAGAACAA
TAGAATACTTCGCATTATGTGAGCCTGGTATTGGGTCAGAGACTTGCTTA
TATAAAAGAAAAACATGTACATACGCAATCTCAATTTCAATCGTTTACGT
CTATAGAATTGCTGCATTCACAGGTGTATTTTTTCTTTTCAGGGAAATAT
TGTACAAGATGGCGAGGGTTGAGTATGATGAAAGATTGTTGTGACATGGT
GATCTACCAACAACTTATATGGGAACTACAACCAAAAACCATCATCGAAA
CGGGTATGAAAGTCAACTCCTTTCTCCAACGTGTTACAAAGTTAAGATTT
TTAAAACCCCGTTCCAGCCTGTCTTTCATATAGTAGGTGAAGAGGGAGAC
GGTGAATTCTTTTTTACTGCTTGAACACCCCTGTCTCATAGTCCCGATAG
AACTTCTTTCCACAGTTGGGATAAAAATTTTTATCGAAATCCCAATGGGG
ATAGCTTTGAGTGCATTTTTTTGCCATTGAATTTCAAATGGGGATGAAAA
CACAGTCGATTCCTAACTAAGGACGATTTGGGTGGGTAGGTGTGGCCAAC
GGGTCTGTGGAACAGTGTTGTCCGTGGTTGATCTAAAATGCACCTTGTTT
GGATGTCATTTTCCTTAAGAATTGAGTCTTAGATTATATATGGACTTGTT
TTTTTTTGACTGTATCAAAATCGTTATTTTTCACCTCCATCACTAATTGT
AAGATAGCCATGAAACTTTTAAAGCTAGAAAGACGTCATTTGCAGAGNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNATATTCTAAAAATACCTTGAAAAA
CTTAAATTTACTGAATGAATATTGATACTTGAAATTCTGAAACGATGGCC
ATTTCTCCTTATATACTGAGAATTGGTAAAAGTCTAAAAGTTGTTCATTT
ACATATATTTTCCCAATCAAACCACTTTTTCTAGGGATTTCTCAGAAATT
GTTAAAAAAGTAATGTCTCCATTTACTTCTGAGACAGACTTAAAACAACA
ACTCTTGTTTTTTTTTCCTTCTTTAGGTGCTTATACTGGCGCATGTGCGT
TATGGATGGCAGACACAGCAAAAAGTTACGGTATCGAAACACACGTTCAT
TCCATCGACATCGAATTAAGTATGGTTGAAGATTTAGCATTGAACGATGA
AAATGTCACTATTCGACAAGGAGATGCAAAACAGATTGCCAAAGCCTTTC
CACCTGAAATGTTAAAGG

Coding sequence (CDS) from alignment at sc0000127:8199..12316-

>TCONS_00011366 ID=TCONS_00011366|Name=TCONS_00011366|organism=Clytia hemisphaerica|type=CDS|length=1476bp|location=Sequence derived from alignment at sc0000127:8199..12316- (Clytia hemisphaerica)
GTGCTTATACTGGCGCATGTGCGTTATGGATGGCAGACACAGCAAAAAGT
TACGGTATCGAAACACACGTTCATTCCATCGACATCGAATTAAGTATGGT
TGAAGATTTAGCATTGAACGATGAAAATGTCACTATTCGACAAGGAGATG
CAAAACAGATTGCCAAAGCCTTTCCACCTGAAATGTTAAAGGGAAATATT
GTACAAGATGGCGAGGGTTGAGTATGATGAAAGATTGTTGTGACATGGTG
ATCTACCAACAACTTATATGGGAACTACAACCAAAAACCATCATCGAAAC
GGATGGCCGCTACAACAGCAGAGGATATCAAGAAAGGCTTAATCACAGAT
ACAACTTATTACTCGAAGTGTAAGAACGATATTTATGTGGAAATCGATAA
ATTGTTATGCGATAAGAATCGATACCAATCGATCAAAGATCGAAAAGAAG
AAAGTGTTTTTGATATGGAAACTTTCAAGAAGGTCTCTAAAGGTGCTTAT
ACTGGCGCATGTGCGTTATGGATGGCAGACACAGCAAAAAGTTACGGTAT
CGAAACACACGTTCATTCCATCGACATCGAATTAAGTATGGTTGAAGATT
TAGCATTGAACGATGAAAATGTCACTATTCGACAAGGAGATGCAAAACAG
ATTGCCAAAGCCTTTCCACCTGAAATGTTAAAGGGAAATATTGTACAAGA
TGGCGAGGGTTGAGTATGATGAAAGATTGTTGTGACATGGTGATCTACCA
ACAACTTATATGGGAACTACAACCAAAAACCATCATCGAAACGGATGGCC
GCTACAACAGCAGAGGATATCAAGAAAGGCTTAATCACAGATACAACTTA
TTACTCGAAGTGTAAGAACGATATTTATGTGGAAATCGATAAATTGTTAT
GCGATAAGAATCGATACCAATCGATCAAAGATCGAAAAGAAGAAAGTGTT
TTTGATATGGAAACTTTCAAGAAGGTCTCTAAAGGTGCTTATACTGGCGC
ATGTGCGTTATGGATGGCAGACACAGCAAAAAGTTACGGTATCGAAACAC
ACGTTCATTCCATCGACATCGAATTAAGTATGGTTGAAGATTTAGCATTG
AACGATGAAAATGTCACTATTCGACAAGGAGATGCAAAACAGATTGCCAA
AGCCTTTCCACCTGAAATGTTAAAGGGAAATATTGTACAAGATGGCGAGG
GTTGAGTATGATGAAAGATTGTTGTGACATGGTGATCTACCAACAACTTA
TATGGGAACTACAACCAAAAACCATCATCGAAACGGATGGCCGCTACAAC
AGCAGAGGATATCAAGAAAGGCTTAATCACAGATACAACTTATTACTCGA
AGTGTAAGAACGATATTTATGTGGAAATCGATAAATTGTTATGCGATAAG
AATCGATACCAATCGATCAAAGATCGAAAAGAAGAAAGTGTTTTTGATAT
GGAAACTTTCAAGAAGGTCTCTAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006374XLOC_006374Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011366-proteinTCONS_00011366-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011366-exon-sc0000127-1575043694:11964..12316TCONS_00011366-exon-sc0000127-1575043694:11964..12316Clytia hemisphaericaexon
TCONS_00011366-exon-sc0000127-1575043694:11014..11124TCONS_00011366-exon-sc0000127-1575043694:11014..11124Clytia hemisphaericaexon
TCONS_00011366-exon-sc0000127-1575043694:8199..8390TCONS_00011366-exon-sc0000127-1575043694:8199..8390Clytia hemisphaericaexon
TCONS_00011366-exon-sc0000127-1510915933:11964..12316TCONS_00011366-exon-sc0000127-1510915933:11964..12316Clytia hemisphaericaexon
TCONS_00011366-exon-sc0000127-1510915933:11014..11124TCONS_00011366-exon-sc0000127-1510915933:11014..11124Clytia hemisphaericaexon
TCONS_00011366-exon-sc0000127-1510915933:8199..8390TCONS_00011366-exon-sc0000127-1510915933:8199..8390Clytia hemisphaericaexon
TCONS_00011366-exon-sc0000127-1491911889:11964..12316TCONS_00011366-exon-sc0000127-1491911889:11964..12316Clytia hemisphaericaexon
TCONS_00011366-exon-sc0000127-1491911889:11014..11124TCONS_00011366-exon-sc0000127-1491911889:11014..11124Clytia hemisphaericaexon
TCONS_00011366-exon-sc0000127-1491911889:8199..8390TCONS_00011366-exon-sc0000127-1491911889:8199..8390Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000127supercontigsc0000127:8199..12316 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.22232	1.93492	0.449326	0.615433	0.856263	1.01495	26.5306	27.799	13.4434	40.4282	7.39781	2.29635	9.26419	8.66129	0.540817	1.11239	9.05641	10.9925	10.2088	10.3297	11.0503	9.54468	2.18406	2.73024	6.73195	4.94337	1.41479	2.09063	0.61665	0.628269
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR007072Rhamnosyl_O-MeTrfase_CmcI
IPR029063SAM-dependent_MTases
Vocabulary: Molecular Function
TermDefinition
GO:0008168methyltransferase activity
Vocabulary: Biological Process
TermDefinition
GO:0008610lipid biosynthetic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008610 lipid biosynthetic process
molecular_function GO:0008168 methyltransferase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011366 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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