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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011365 ID=TCONS_00011365|Name=TCONS_00011365|organism=Clytia hemisphaerica|type=transcript|length=1311bp
GCTTTGATTAACTTAGCAACTTTATTTACCTTCGTTCGGACCTATTCTTA
TAGTGTTGGGGTATATGGGTGAACAGAAAATCAAGAAGTCTTTGGCAAAT
CACACGAACGGAAATGTTTAAATAGAAGTCGGTCATTTGTAAAGGGTTTT
TACCGAATATTGTCCTATTCCTATGCTACTAATAGCGAGTTTTTGCATCC
GCCCTTTTGAGGAGTGCAGAGTGACTGAAACAATTGGGAACAATCTGAGG
TTCTGACCCGCAAATTTGATAAGGGTAATTATCAGTTAATTTACCGTCAA
TCACAGTCAATTTGGatctagaaaaatcaaaagctaaccgtctccgtcgc
agataaaccaatacataaactcgctaataattTTTATTGTATTAAACAAT
GGTTCTTACTTGCAACCATTTCGTTGATCCAAAACTTCTTTGATTTTACT
TTCAGACAATGGCGTTGATGGTACAACATATATGAATTTCCAAGTCTCAG
GGGGTaaattcacacaaaaattcacaCGTAAGGGTTACACACCGGACAAT
CACACTTTGAAAGATTTCACTGTCCTTGGTGTCTCATCCAAACCATCCAC
CGTCAAAATTAATGGGCAACAATTATCATCCTTCAATTACGACCAACCTA
ACCAGgTCTTGAAGTTCAGTCAAGAAGTCAGTATTATGGACGAAAACACC
ATCTCATGGGCATAAAGTAACTATCTTaatttcaaccaatagaaaacTGA
GAACGATAAGTGGGTTCCATTCTTCCAATGTTGTCGATCAGAAGAATTTG
GCCACTAACTGTCATGGAGTTACTATAACTGTGCTTCgctattttttaat
gaaaattcaatgaaaatagTTCTTTTAGGCTTTTTATCAATTTAAATGTT
TCAATAATGTGTGAATTTATTGTAAATGCACATAAGACTTTTACATgatt
ttttaagtattttattttacaaaattttagtaGATCAAATTTTATATTGT
AGTTTTTCTTAATGTTCGAATTTTGTGTACAAAAACGTAAAGAGATTTTG
ATAATTTAATACATGGACTACTTATATTAGCCTCAATCTAAGTACTATGC
TTTGGTTTATAATTGCACCCCTGTGTTACACGCTATCTTTATACCAGTCT
AGGTGTACTCTatgatgaaaatggtcaaaactcAATAATATTaacatcat
ggaattttgcaatagaacttcaaaatttcacgaaagtgtttttttttttt
gctcccgacatgtaccttaaaggaagaaattttggcgggaatttaatttg
gcggatggccg Run BLAST on NCBI transcript from alignment at sc0000127:550159..552534+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011365 ID=TCONS_00011365|Name=TCONS_00011365|organism=Clytia hemisphaerica|type=transcript|length=2376bp|location=Sequence derived from alignment at sc0000127:550159..552534+ (Clytia hemisphaerica)
GCTTTGATTAACTTAGCAACTTTATTTACCTTCGTTCGGACCTATTCTTA
TAGTGTTGGGGTATATGGGTGAACAGAAAATCAAGAAGTCTTTGGCAAAT
CACACGAACGGAAATGTTTAAATAGAAGTCGGTCATTTGTAAAGGGTTTT
TACCGAATATTGTCCTATTCCTATGCTACTAATAGCGAGTTTTTGCATCC
GCCCTTTTGAGGAGTGCAGAGTGACTGAAACAATTGGGAACAATCTGAGG
TTCTGACCCGCAAATTTGATAAGGGTAATTATCAGTTAATTTACCGTCAA
TCACAGTCAATTTGGatctagaaaaatcaaaagctaaccgtctccgtcgc
agataaaccaatacataaactcgctaataattTTTATTGTATTAAACAAT
GGTTCTTACTTGCAACCATTTCGTTGATCCAAAACTTCTTTGATTTTACT
TTCAGACAATGGCGTTGATGGTACAACATATATGAATTTCCAAGTCTCAG
GGGTAAAGCCTCATTATCTTATTTTCAGGATTTTAATGTTATAGGTTTGA
ACGCTGAGTATTTTAAATCGTTTCCTGTTAGATGCTTACTTTTCATAGTT
TCCCAAAATgaatcaattttctttaaattcagaTCAAGCTATAAGGACCA
AAAGGAATTTTGAAGATGATGGTCTTTATCCAGGATATGCGCCACACTGC
AATGACCTTATGTTATTATGCTATAAATTTTGTCATTGATATCTATTTTT
TTCACCTAATACGTCACAAGCGAGCAATTATATcttgaaaaattacgtaa
tgCAAGATAACATTGCAGGGGTACATAACCTGAAAACGAGTGCCTTAATT
GATACAAGCTCATATGAGAGGATTAGGCAAACGAAGTACTGAAtgaattt
cttttcttcttaCAAACAGGGTaaattcacacaaaaattcacaCGTAAGG
GTTACACACCGGACAATCACACTTTGAAAGATTTCACTGTCCTTGGTGTC
TCATCCAAACCATCCACCGTCAAAATTAATGGGCAACAATTATCATCCTT
CAATTACGACCAACCTAACCAGGTAAAGCTTTAGATTATTATTCTAAGTG
TTCTTTTTACGTTGTTCTAACGGTATATAAACATTGTGATTGGTAAAATT
TTGACCTCCTGTTCCACCTCAGTTGGATGGAGATTAAACTTTTCGATGGT
TTATAGATAATTAGTGGAAAAACTTTCATGATTTATATTGATAAGGGTCC
CATTATGGCATGGGTTATGTATCTAAACTCGAAAATGGAATGTTTGGATA
GAAATGTTCATATAAATATAAACGATTTATGGAGCGATAGCCGAGTGGTC
GAAAGTGCCAAGGATTTACGGTTTGACTCCCCGCTCTTTCCAAAAGTTCC
ATTTACTTCATATATAGGCAATTCGACATGCTACGGAGTCATTGAAAACT
ATTGAAAGACtttctaaaagtcctagatttctggactatccacgtaaaat
agagagattatgtatcggagatattctacggctacggttgcgtgGCTGCC
CATGAaggtcgtcaccaaaggcgacatgctgttatctactttgctctgta
cggaaaaaacaccaaaacactgtataagcaaagtcgacataattaTGTAa
tgccattacttgccttactcgccatttccctcgccatTCAACTcaattct
ttctttctttctttctttaggTCTTGAAGTTCAGTCAAGAAGTCAGTATT
ATGGACGAAAACACCATCTCATGGGCATAAAGTAACTATCTTaatttcaa
ccaatagaaaacTGAGAACGATAAGTGGGTTCCATTCTTCCAATGTTGTC
GATCAGAAGAATTTGGCCACTAACTGTCATGGAGTTACTATAACTGTGCT
TCgctattttttaatgaaaattcaatgaaaatagTTCTTTTAGGCTTTTT
ATCAATTTAAATGTTTCAATAATGTGTGAATTTATTGTAAATGCACATAA
GACTTTTACATgattttttaagtattttattttacaaaattttagtaGAT
CAAATTTTATATTGTAGTTTTTCTTAATGTTCGAATTTTGTGTACAAAAA
CGTAAAGAGATTTTGATAATTTAATACATGGACTACTTATATTAGCCTCA
ATCTAAGTACTATGCTTTGGTTTATAATTGCACCCCTGTGTTACACGCTA
TCTTTATACCAGTCTAGGTGTACTCTatgatgaaaatggtcaaaactcAA
TAATATTaacatcatggaattttgcaatagaacttcaaaatttcacgaaa
gtgttttttttttttgctcccgacatgtaccttaaaggaagaaattttgg
cgggaatttaatttggcggatggccg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011365-exon-sc0000127-1491911889:550159..550660 | TCONS_00011365-exon-sc0000127-1491911889:550159..550660 | Clytia hemisphaerica | exon |
| TCONS_00011365-exon-sc0000127-1510915933:550159..550660 | TCONS_00011365-exon-sc0000127-1510915933:550159..550660 | Clytia hemisphaerica | exon |
| TCONS_00011365-exon-sc0000127-1575043694:550159..550660 | TCONS_00011365-exon-sc0000127-1575043694:550159..550660 | Clytia hemisphaerica | exon |
| TCONS_00011365-exon-sc0000127-1491911889:551078..551230 | TCONS_00011365-exon-sc0000127-1491911889:551078..551230 | Clytia hemisphaerica | exon |
| TCONS_00011365-exon-sc0000127-1510915933:551078..551230 | TCONS_00011365-exon-sc0000127-1510915933:551078..551230 | Clytia hemisphaerica | exon |
| TCONS_00011365-exon-sc0000127-1575043694:551078..551230 | TCONS_00011365-exon-sc0000127-1575043694:551078..551230 | Clytia hemisphaerica | exon |
| TCONS_00011365-exon-sc0000127-1491911889:551879..552534 | TCONS_00011365-exon-sc0000127-1491911889:551879..552534 | Clytia hemisphaerica | exon |
| TCONS_00011365-exon-sc0000127-1510915933:551879..552534 | TCONS_00011365-exon-sc0000127-1510915933:551879..552534 | Clytia hemisphaerica | exon |
| TCONS_00011365-exon-sc0000127-1575043694:551879..552534 | TCONS_00011365-exon-sc0000127-1575043694:551879..552534 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000127 | supercontig | sc0000127:550159..552534 + |
Blast
The following BLAST results are available for this feature:
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